Wall clock time and date at job start Tue Mar 31 2020 20:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47310 * 2 1 4 4 C 1.52996 * 109.47097 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47097 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47119 * 55.00057 * 5 4 3 7 7 C 1.53000 * 109.47200 * 295.00086 * 5 4 3 8 8 C 1.50697 * 109.47178 * 175.00005 * 5 4 3 9 9 O 1.21283 * 119.99987 * 34.91281 * 8 5 4 10 10 N 1.34779 * 120.00304 * 214.90871 * 8 5 4 11 11 C 1.47430 * 125.64500 * 354.93757 * 10 8 5 12 12 C 1.55384 * 104.87020 * 204.09365 * 11 10 8 13 13 H 1.08996 * 111.02589 * 80.98514 * 12 11 10 14 14 N 1.46505 * 111.18591 * 204.97745 * 12 11 10 15 15 C 1.36929 * 120.00190 * 267.04142 * 14 12 11 16 16 H 1.07999 * 120.00249 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99976 * 180.02562 * 15 14 12 18 18 N 1.31620 * 120.00004 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99983 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47294 * 90.00134 * 19 17 15 21 21 H 1.48506 * 109.47113 * 209.99928 * 19 17 15 22 22 H 1.48500 * 109.46815 * 329.99621 * 19 17 15 23 23 C 1.55153 * 101.36975 * 323.01616 * 12 11 10 24 24 H 1.09003 * 110.72014 * 153.94909 * 23 12 11 25 25 N 1.46501 * 110.72070 * 277.04509 * 23 12 11 26 26 C 1.35311 * 125.86822 * 82.85593 * 25 23 12 27 27 C 1.35351 * 106.17512 * 180.18545 * 26 25 23 28 28 N 1.33771 * 106.49518 * 359.58672 * 27 26 25 29 29 N 1.28632 * 108.88846 * 0.26743 * 28 27 26 30 30 C 1.47025 * 125.65089 * 174.89441 * 10 8 5 31 31 H 1.08999 * 109.47405 * 300.00338 * 1 2 3 32 32 H 1.09000 * 109.46651 * 60.00095 * 1 2 3 33 33 H 1.08999 * 109.47146 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47405 * 239.99662 * 2 1 3 35 35 H 1.09000 * 109.46651 * 119.99905 * 2 1 3 36 36 H 1.08999 * 109.47163 * 59.99514 * 3 2 1 37 37 H 1.08993 * 109.46961 * 299.99855 * 3 2 1 38 38 H 1.08999 * 109.47271 * 59.99874 * 4 3 2 39 39 H 1.09005 * 109.47212 * 299.99552 * 4 3 2 40 40 H 1.09006 * 109.46899 * 305.15798 * 7 5 4 41 41 H 1.08995 * 109.46938 * 65.15361 * 7 5 4 42 42 H 1.08996 * 109.47369 * 185.15619 * 7 5 4 43 43 H 1.08997 * 110.36621 * 322.93000 * 11 10 8 44 44 H 1.08996 * 110.36504 * 85.14184 * 11 10 8 45 45 H 0.97004 * 119.99734 * 87.04214 * 14 12 11 46 46 H 0.97004 * 120.00353 * 179.97438 * 18 17 15 47 47 H 1.07996 * 126.91364 * 0.03329 * 26 25 23 48 48 H 1.08001 * 126.75562 * 179.85354 * 27 26 25 49 49 H 1.08995 * 109.88127 * 59.55985 * 30 10 8 50 50 H 1.09003 * 110.00885 * 298.46592 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6451 3.4245 0.8413 7 6 3.6759 3.5682 -1.3079 8 6 5.5819 2.8868 0.1245 9 8 6.2348 2.0087 -0.3987 10 7 6.1995 3.8641 0.8171 11 6 5.5429 5.0431 1.4108 12 6 6.6661 6.1111 1.5224 13 1 6.8247 6.6129 0.5679 14 7 6.3715 7.0807 2.5804 15 6 5.7159 8.2446 2.2792 16 1 5.4164 8.4480 1.2617 17 6 5.4373 9.1636 3.2816 18 7 4.8077 10.2825 2.9921 19 14 5.9572 8.8128 5.0412 20 1 7.3223 9.3504 5.2706 21 1 5.0054 9.4629 5.9776 22 1 5.9571 7.3462 5.2743 23 6 7.8879 5.2319 1.8983 24 1 8.8165 5.7057 1.5799 25 7 7.9114 4.9657 3.3387 26 6 7.2132 3.9987 3.9777 27 6 7.5262 4.1121 5.2897 28 7 8.3962 5.1236 5.3866 29 7 8.6036 5.6083 4.2132 30 6 7.6395 3.9307 1.1065 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6768 1.9563 -0.8899 38 1 3.9337 0.9284 -0.8891 39 1 3.9330 0.9288 0.8909 40 1 4.0334 2.9780 -2.1517 41 1 2.5899 3.6488 -1.3552 42 1 4.1163 4.5644 -1.3486 43 1 4.7440 5.3998 0.7609 44 1 5.1486 4.8008 2.3976 45 1 6.6408 6.8982 3.4942 46 1 4.6126 10.9246 3.6926 47 1 6.5397 3.2822 3.5312 48 1 7.1510 3.5028 6.0986 49 1 8.2043 3.9502 0.1746 50 1 7.9400 3.0701 1.7041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129807608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:21 Heat of formation + Delta-G solvation = 71.672417 kcal Electronic energy + Delta-G solvation = -30316.259699 eV Core-core repulsion = 26381.039759 eV Total energy + Delta-G solvation = -3935.219939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.15591 -40.36262 -38.24420 -36.47270 -34.50954 -33.90022 -33.40391 -31.56715 -30.85284 -29.88497 -28.74988 -28.15301 -25.68189 -24.44067 -23.64854 -22.51060 -22.33916 -21.52867 -20.95577 -20.33839 -19.02058 -18.20422 -17.64631 -17.24282 -15.99400 -15.87392 -15.65807 -15.49859 -14.92480 -14.78600 -14.34450 -14.12681 -14.04388 -13.95376 -13.61839 -13.43197 -13.23316 -13.02215 -12.83362 -12.65717 -12.59196 -12.22703 -11.99159 -11.80903 -11.61869 -11.50217 -11.47685 -11.28292 -11.20894 -11.10745 -10.98559 -10.85451 -10.73665 -10.69374 -10.29407 -9.96351 -9.82259 -9.73085 -9.23406 -9.17061 -8.76613 -7.61547 -5.99478 -3.40914 1.78211 2.40182 2.53395 2.78805 2.80972 3.31420 3.35775 3.44432 3.95393 4.35228 4.43363 4.45909 4.51016 4.61837 4.66678 4.72216 4.85221 4.89840 4.98529 4.99493 5.11926 5.20239 5.24602 5.26034 5.30685 5.37253 5.39189 5.43105 5.44104 5.50146 5.56483 5.61782 5.66525 5.69972 5.72152 5.81623 5.83750 5.91407 5.95320 5.97936 6.07880 6.12732 6.17097 6.19792 6.30672 6.75523 7.36533 7.68071 8.05095 8.16942 8.72394 8.90816 9.64469 9.77393 11.16449 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.003567 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.096186 B = 7848.027958 C = 8770.849552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.101 4.101 5 C -0.106 4.106 6 H 0.092 0.908 7 C -0.141 4.141 8 C 0.537 3.463 9 O -0.545 6.545 10 N -0.618 5.618 11 C 0.065 3.935 12 C 0.175 3.825 13 H 0.103 0.897 14 N -0.728 5.728 15 C -0.267 4.267 16 H 0.096 0.904 17 C 0.022 3.978 18 N -0.920 5.920 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.108 3.892 24 H 0.136 0.864 25 N -0.271 5.271 26 C -0.047 4.047 27 C -0.055 4.055 28 N -0.276 5.276 29 N -0.075 5.075 30 C 0.106 3.894 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.370 0.630 46 H 0.264 0.736 47 H 0.182 0.818 48 H 0.186 0.814 49 H 0.095 0.905 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 -19.120 -6.348 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.139 4.139 5 C -0.128 4.128 6 H 0.111 0.889 7 C -0.199 4.199 8 C 0.326 3.674 9 O -0.422 6.422 10 N -0.353 5.353 11 C -0.061 4.061 12 C 0.060 3.940 13 H 0.121 0.879 14 N -0.369 5.369 15 C -0.396 4.396 16 H 0.114 0.886 17 C -0.176 4.176 18 N -0.565 5.565 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.205 1.205 23 C 0.004 3.996 24 H 0.153 0.847 25 N -0.065 5.065 26 C -0.198 4.198 27 C -0.213 4.213 28 N -0.141 5.141 29 N -0.055 5.055 30 C -0.018 4.018 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.205 0.795 46 H 0.074 0.926 47 H 0.199 0.801 48 H 0.203 0.797 49 H 0.113 0.887 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.124 -18.220 -6.525 19.469 hybrid contribution -0.605 -0.956 1.184 1.638 sum -2.729 -19.176 -5.341 20.092 Atomic orbital electron populations 1.21780 0.95929 1.01471 1.01880 1.21519 0.95759 0.96915 1.02026 1.21678 0.94835 0.96902 1.02477 1.21456 0.95246 0.94021 1.03141 1.21305 0.91119 0.99178 1.01166 0.88948 1.21755 1.02198 1.00574 0.95341 1.20443 0.90194 0.79865 0.76854 1.90684 1.67435 1.37233 1.46827 1.48575 1.07944 1.24198 1.54596 1.23700 0.98900 0.84855 0.98686 1.21721 0.88571 0.88575 0.95095 0.87923 1.42675 1.69505 1.19402 1.05332 1.18977 1.30746 0.93334 0.96540 0.88588 1.24642 0.99278 0.96040 0.97655 1.69689 1.44431 1.09514 1.32833 0.86646 0.78776 0.77828 0.85849 1.20262 1.21388 1.20488 1.23314 1.04745 0.97601 0.73914 0.84654 1.47333 1.28705 1.21220 1.09230 1.23489 1.03816 0.98582 0.93879 1.23525 1.01324 1.00349 0.96066 1.75105 1.15641 1.09418 1.13956 1.78382 1.15992 1.18186 0.92913 1.22129 0.83681 0.95856 1.00162 0.92710 0.92743 0.92929 0.92041 0.92111 0.91807 0.91491 0.90821 0.91887 0.91901 0.91100 0.91930 0.89422 0.91089 0.79523 0.92606 0.80126 0.79702 0.88654 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -0.95 4.97 -26.73 -0.13 -1.08 16 4 C -0.10 -0.94 4.26 -26.73 -0.11 -1.05 16 5 C -0.11 -1.08 2.15 -91.77 -0.20 -1.27 16 6 H 0.09 0.90 7.14 -51.93 -0.37 0.53 16 7 C -0.14 -1.31 8.80 37.16 0.33 -0.98 16 8 C 0.54 6.77 6.84 -10.99 -0.08 6.69 16 9 O -0.54 -8.44 16.71 5.56 0.09 -8.35 16 10 N -0.62 -7.43 3.33 -170.22 -0.57 -7.99 16 11 C 0.06 0.87 5.44 -2.27 -0.01 0.86 16 12 C 0.18 2.77 3.60 -65.52 -0.24 2.53 16 13 H 0.10 1.57 8.09 -51.93 -0.42 1.15 16 14 N -0.73 -15.68 5.02 -51.11 -0.26 -15.94 16 15 C -0.27 -6.93 10.44 -15.06 -0.16 -7.09 16 16 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 17 C 0.02 0.62 5.50 -17.43 -0.10 0.52 16 18 N -0.92 -27.55 13.97 55.49 0.78 -26.78 16 19 Si 0.88 22.51 27.74 -169.99 -4.71 17.80 16 20 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.28 -7.03 6.52 56.52 0.37 -6.66 16 23 C 0.11 1.45 3.96 -66.10 -0.26 1.19 16 24 H 0.14 1.64 8.14 -51.93 -0.42 1.22 16 25 N -0.27 -4.24 2.31 -52.99 -0.12 -4.37 16 26 C -0.05 -0.65 9.26 -17.05 -0.16 -0.81 16 27 C -0.06 -0.82 12.05 -17.74 -0.21 -1.04 16 28 N -0.28 -5.15 12.41 30.23 0.38 -4.78 16 29 N -0.08 -1.42 12.43 60.35 0.75 -0.67 16 30 C 0.11 1.20 5.92 -3.06 -0.02 1.19 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.50 6.68 -51.93 -0.35 0.15 16 38 H 0.07 0.75 8.02 -51.93 -0.42 0.33 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.56 6.82 -51.93 -0.35 0.20 16 42 H 0.06 0.61 7.97 -51.93 -0.41 0.20 16 43 H 0.09 1.16 7.50 -51.93 -0.39 0.77 16 44 H 0.07 1.02 7.40 -51.93 -0.38 0.64 16 45 H 0.37 8.40 3.97 -40.82 -0.16 8.24 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 47 H 0.18 2.04 7.70 -52.49 -0.40 1.64 16 48 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 49 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.08 0.89 7.29 -51.93 -0.38 0.51 16 LS Contribution 398.11 15.07 6.00 6.00 Total: -1.00 -33.11 398.11 -7.09 -40.19 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.28 Total: 6.95 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.14 Total: -2.06 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.95 Total: -60.52 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.11 -7.09 -40.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129807608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.865 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds