Wall clock time and date at job start Tue Mar 31 2020 20:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47310 * 2 1 4 4 C 1.52996 * 109.47097 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47097 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47119 * 55.00057 * 5 4 3 7 7 C 1.53000 * 109.47200 * 295.00086 * 5 4 3 8 8 C 1.50697 * 109.47178 * 175.00005 * 5 4 3 9 9 O 1.21283 * 119.99987 * 34.91281 * 8 5 4 10 10 N 1.34779 * 120.00304 * 214.90871 * 8 5 4 11 11 C 1.47430 * 125.64500 * 354.93757 * 10 8 5 12 12 C 1.55384 * 104.87020 * 204.09365 * 11 10 8 13 13 H 1.08996 * 111.02589 * 80.98514 * 12 11 10 14 14 N 1.46505 * 111.18591 * 204.97745 * 12 11 10 15 15 C 1.36929 * 120.00190 * 267.04142 * 14 12 11 16 16 H 1.07999 * 120.00249 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99976 * 180.02562 * 15 14 12 18 18 N 1.31620 * 120.00004 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99983 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47294 * 90.00134 * 19 17 15 21 21 H 1.48506 * 109.47113 * 209.99928 * 19 17 15 22 22 H 1.48500 * 109.46815 * 329.99621 * 19 17 15 23 23 C 1.55153 * 101.36975 * 323.01616 * 12 11 10 24 24 H 1.09003 * 110.72014 * 153.94909 * 23 12 11 25 25 N 1.46501 * 110.72070 * 277.04509 * 23 12 11 26 26 C 1.35311 * 125.86822 * 82.85593 * 25 23 12 27 27 C 1.35351 * 106.17512 * 180.18545 * 26 25 23 28 28 N 1.33771 * 106.49518 * 359.58672 * 27 26 25 29 29 N 1.28632 * 108.88846 * 0.26743 * 28 27 26 30 30 C 1.47025 * 125.65089 * 174.89441 * 10 8 5 31 31 H 1.08999 * 109.47405 * 300.00338 * 1 2 3 32 32 H 1.09000 * 109.46651 * 60.00095 * 1 2 3 33 33 H 1.08999 * 109.47146 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47405 * 239.99662 * 2 1 3 35 35 H 1.09000 * 109.46651 * 119.99905 * 2 1 3 36 36 H 1.08999 * 109.47163 * 59.99514 * 3 2 1 37 37 H 1.08993 * 109.46961 * 299.99855 * 3 2 1 38 38 H 1.08999 * 109.47271 * 59.99874 * 4 3 2 39 39 H 1.09005 * 109.47212 * 299.99552 * 4 3 2 40 40 H 1.09006 * 109.46899 * 305.15798 * 7 5 4 41 41 H 1.08995 * 109.46938 * 65.15361 * 7 5 4 42 42 H 1.08996 * 109.47369 * 185.15619 * 7 5 4 43 43 H 1.08997 * 110.36621 * 322.93000 * 11 10 8 44 44 H 1.08996 * 110.36504 * 85.14184 * 11 10 8 45 45 H 0.97004 * 119.99734 * 87.04214 * 14 12 11 46 46 H 0.97004 * 120.00353 * 179.97438 * 18 17 15 47 47 H 1.07996 * 126.91364 * 0.03329 * 26 25 23 48 48 H 1.08001 * 126.75562 * 179.85354 * 27 26 25 49 49 H 1.08995 * 109.88127 * 59.55985 * 30 10 8 50 50 H 1.09003 * 110.00885 * 298.46592 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6451 3.4245 0.8413 7 6 3.6759 3.5682 -1.3079 8 6 5.5819 2.8868 0.1245 9 8 6.2348 2.0087 -0.3987 10 7 6.1995 3.8641 0.8171 11 6 5.5429 5.0431 1.4108 12 6 6.6661 6.1111 1.5224 13 1 6.8247 6.6129 0.5679 14 7 6.3715 7.0807 2.5804 15 6 5.7159 8.2446 2.2792 16 1 5.4164 8.4480 1.2617 17 6 5.4373 9.1636 3.2816 18 7 4.8077 10.2825 2.9921 19 14 5.9572 8.8128 5.0412 20 1 7.3223 9.3504 5.2706 21 1 5.0054 9.4629 5.9776 22 1 5.9571 7.3462 5.2743 23 6 7.8879 5.2319 1.8983 24 1 8.8165 5.7057 1.5799 25 7 7.9114 4.9657 3.3387 26 6 7.2132 3.9987 3.9777 27 6 7.5262 4.1121 5.2897 28 7 8.3962 5.1236 5.3866 29 7 8.6036 5.6083 4.2132 30 6 7.6395 3.9307 1.1065 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6768 1.9563 -0.8899 38 1 3.9337 0.9284 -0.8891 39 1 3.9330 0.9288 0.8909 40 1 4.0334 2.9780 -2.1517 41 1 2.5899 3.6488 -1.3552 42 1 4.1163 4.5644 -1.3486 43 1 4.7440 5.3998 0.7609 44 1 5.1486 4.8008 2.3976 45 1 6.6408 6.8982 3.4942 46 1 4.6126 10.9246 3.6926 47 1 6.5397 3.2822 3.5312 48 1 7.1510 3.5028 6.0986 49 1 8.2043 3.9502 0.1746 50 1 7.9400 3.0701 1.7041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129807608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:20 Heat of formation + Delta-G solvation = 50.691411 kcal Electronic energy + Delta-G solvation = -30317.169503 eV Core-core repulsion = 26381.039759 eV Total energy + Delta-G solvation = -3936.129744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.36504 -41.40969 -39.37349 -37.24394 -36.14781 -35.06783 -34.18621 -33.43630 -32.03378 -31.04969 -29.62661 -29.31488 -26.58436 -25.63816 -25.07757 -23.70112 -23.39562 -22.57889 -21.77266 -21.49280 -20.18172 -19.82211 -18.81376 -18.31696 -17.31679 -16.84177 -16.66224 -16.51378 -16.34753 -16.02322 -15.67119 -15.24811 -14.98902 -14.92827 -14.75703 -14.61590 -14.32240 -14.22872 -13.93201 -13.78929 -13.39004 -13.32166 -13.13746 -13.03177 -12.91491 -12.72778 -12.61560 -12.53009 -12.23104 -12.18179 -11.97150 -11.92476 -11.90711 -11.79131 -11.53440 -11.35210 -11.31412 -11.01643 -10.75925 -10.37554 -9.86166 -9.49137 -8.13600 -5.48380 0.59310 1.25568 1.28205 1.32599 1.36303 1.53477 1.59219 1.78540 2.35053 2.85120 3.10499 3.34303 3.41403 3.57281 3.60851 3.76918 3.84695 3.93033 3.97862 4.10929 4.16008 4.22132 4.24814 4.27554 4.32019 4.43664 4.50957 4.54190 4.62875 4.69397 4.77666 4.81547 4.82945 4.90388 4.94486 4.98144 5.02383 5.05045 5.15102 5.20996 5.23459 5.28758 5.39092 5.48774 5.55271 5.58918 5.67255 6.10111 6.33369 6.92540 7.04883 7.48701 7.66525 7.80445 9.06232 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.003567 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.096186 B = 7848.027958 C = 8770.849552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.095 4.095 5 C -0.104 4.104 6 H 0.100 0.900 7 C -0.139 4.139 8 C 0.539 3.461 9 O -0.572 6.572 10 N -0.612 5.612 11 C 0.081 3.919 12 C 0.163 3.837 13 H 0.110 0.890 14 N -0.738 5.738 15 C -0.230 4.230 16 H 0.083 0.917 17 C -0.038 4.038 18 N -0.966 5.966 19 Si 0.931 3.069 20 H -0.291 1.291 21 H -0.291 1.291 22 H -0.274 1.274 23 C 0.113 3.887 24 H 0.148 0.852 25 N -0.271 5.271 26 C -0.036 4.036 27 C -0.060 4.060 28 N -0.311 5.311 29 N -0.117 5.117 30 C 0.113 3.887 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.365 0.635 46 H 0.259 0.741 47 H 0.210 0.790 48 H 0.219 0.781 49 H 0.113 0.887 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 -21.498 -6.901 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.133 4.133 5 C -0.125 4.125 6 H 0.118 0.882 7 C -0.197 4.197 8 C 0.330 3.670 9 O -0.451 6.451 10 N -0.346 5.346 11 C -0.044 4.044 12 C 0.051 3.949 13 H 0.128 0.872 14 N -0.380 5.380 15 C -0.360 4.360 16 H 0.101 0.899 17 C -0.231 4.231 18 N -0.615 5.615 19 Si 0.761 3.239 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.200 1.200 23 C 0.010 3.990 24 H 0.165 0.835 25 N -0.065 5.065 26 C -0.188 4.188 27 C -0.218 4.218 28 N -0.176 5.176 29 N -0.096 5.096 30 C -0.011 4.011 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.199 0.801 46 H 0.069 0.931 47 H 0.227 0.773 48 H 0.235 0.765 49 H 0.131 0.869 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.655 -20.652 -7.100 21.999 hybrid contribution -0.397 -0.361 1.238 1.349 sum -3.053 -21.013 -5.861 22.028 Atomic orbital electron populations 1.21777 0.95410 1.01859 1.01983 1.21519 0.96207 0.96578 1.01957 1.21645 0.93608 0.97328 1.02837 1.21401 0.96237 0.93258 1.02399 1.21365 0.89348 0.99922 1.01898 0.88187 1.21756 1.03247 0.99982 0.94666 1.20843 0.91034 0.79163 0.75987 1.90682 1.68239 1.38261 1.47939 1.48501 1.08117 1.23651 1.54348 1.23295 0.97769 0.84461 0.98914 1.21995 0.90457 0.88565 0.93867 0.87215 1.42658 1.69516 1.19372 1.06447 1.19043 1.27714 0.93809 0.95441 0.89902 1.25146 1.01099 0.96615 1.00285 1.69790 1.47525 1.10858 1.33365 0.85813 0.77314 0.77565 0.83169 1.21795 1.21794 1.19959 1.23371 1.04077 0.98199 0.73361 0.83450 1.47509 1.28320 1.21114 1.09572 1.23971 1.03083 0.98069 0.93654 1.24190 1.00355 0.99657 0.97597 1.75054 1.17218 1.10960 1.14367 1.78338 1.17921 1.19758 0.93574 1.22167 0.83459 0.94789 1.00677 0.92738 0.92500 0.92464 0.92090 0.92261 0.91590 0.90929 0.91849 0.92361 0.92264 0.89472 0.92458 0.88811 0.91327 0.80063 0.93120 0.77337 0.76452 0.86925 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.13 -1.59 5.93 30.59 0.18 -1.40 16 3 C -0.12 -1.55 4.97 30.59 0.15 -1.40 16 4 C -0.09 -1.57 4.26 30.59 0.13 -1.44 16 5 C -0.10 -1.84 2.15 -11.54 -0.02 -1.87 16 6 H 0.10 1.64 7.14 -2.39 -0.02 1.63 16 7 C -0.14 -2.25 8.80 71.98 0.63 -1.61 16 8 C 0.54 12.15 6.84 87.66 0.60 12.75 16 9 O -0.57 -16.43 16.71 -3.04 -0.05 -16.48 16 10 N -0.61 -12.84 3.33 -810.83 -2.70 -15.54 16 11 C 0.08 1.97 5.44 87.02 0.47 2.44 16 12 C 0.16 4.81 3.60 46.55 0.17 4.98 16 13 H 0.11 3.13 8.09 -2.39 -0.02 3.11 16 14 N -0.74 -30.78 5.02 -315.60 -1.59 -32.37 16 15 C -0.23 -11.79 10.44 84.04 0.88 -10.91 16 16 H 0.08 4.45 8.06 -2.91 -0.02 4.43 16 17 C -0.04 -2.15 5.50 84.86 0.47 -1.68 16 18 N -0.97 -58.90 13.97 21.65 0.30 -58.59 16 19 Si 0.93 47.20 27.74 68.60 1.90 49.10 16 20 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 21 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 22 H -0.27 -13.40 6.52 99.48 0.65 -12.76 16 23 C 0.11 2.75 3.96 46.18 0.18 2.94 16 24 H 0.15 3.24 8.14 -2.39 -0.02 3.23 16 25 N -0.27 -7.92 2.31 -321.55 -0.74 -8.66 16 26 C -0.04 -0.91 9.26 83.49 0.77 -0.14 16 27 C -0.06 -1.65 12.05 83.73 1.01 -0.64 16 28 N -0.31 -11.29 12.41 -58.26 -0.72 -12.01 16 29 N -0.12 -4.31 12.43 37.02 0.46 -3.85 16 30 C 0.11 2.21 5.92 86.73 0.51 2.72 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.89 6.68 -2.39 -0.02 0.87 16 38 H 0.06 1.19 8.02 -2.39 -0.02 1.17 16 39 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.09 1.13 6.82 -2.39 -0.02 1.11 16 42 H 0.06 0.99 7.97 -2.39 -0.02 0.97 16 43 H 0.09 2.21 7.50 -2.39 -0.02 2.19 16 44 H 0.07 1.76 7.40 -2.39 -0.02 1.74 16 45 H 0.37 16.11 3.97 -92.71 -0.37 15.74 16 46 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.21 3.87 7.70 -2.91 -0.02 3.85 16 48 H 0.22 4.13 8.06 -2.91 -0.02 4.11 16 49 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.09 1.65 7.29 -2.39 -0.02 1.63 16 Total: -1.00 -71.95 398.11 4.21 -67.73 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.50 Total: 26.97 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 6.85 Total: 3.70 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -4.99 Total: -131.02 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.05 Total: -16.48 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.90 Total: 49.10 kcal Total: -71.95 4.21 -67.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129807608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.422 kcal (2) G-P(sol) polarization free energy of solvation -71.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds