Wall clock time and date at job start Tue Mar 31 2020 20:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.46985 * 2 1 4 4 C 1.52995 * 109.47540 * 239.99941 * 2 1 3 5 5 C 1.52999 * 109.47177 * 119.99542 * 2 1 3 6 6 C 1.53002 * 109.47064 * 60.00654 * 5 2 1 7 7 C 1.50696 * 109.47224 * 180.02562 * 6 5 2 8 8 O 1.21286 * 120.00211 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99996 * 179.97438 * 7 6 5 10 10 C 1.47020 * 125.65070 * 0.02562 * 9 7 6 11 11 C 1.54322 * 107.27273 * 178.89483 * 10 9 7 12 12 H 1.09001 * 110.71808 * 96.17377 * 11 10 9 13 13 N 1.46503 * 110.87256 * 219.37487 * 11 10 9 14 14 C 1.36940 * 119.99701 * 268.61188 * 13 11 10 15 15 H 1.07998 * 120.00344 * 0.02562 * 14 13 11 16 16 C 1.38815 * 119.99888 * 180.02562 * 14 13 11 17 17 N 1.31616 * 119.99639 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00319 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47176 * 89.99401 * 18 16 14 20 20 H 1.48493 * 109.47455 * 210.00101 * 18 16 14 21 21 H 1.48505 * 109.46761 * 330.00137 * 18 16 14 22 22 C 1.55156 * 102.94391 * 337.81125 * 11 10 9 23 23 H 1.08996 * 111.00368 * 153.61681 * 22 11 10 24 24 N 1.46502 * 111.00191 * 277.42340 * 22 11 10 25 25 C 1.35322 * 125.86299 * 84.71758 * 24 22 11 26 26 C 1.35351 * 106.16806 * 180.26356 * 25 24 22 27 27 N 1.33769 * 106.50107 * 0.02562 * 26 25 24 28 28 N 1.28629 * 108.88659 * 359.97438 * 27 26 25 29 29 C 1.47431 * 125.64907 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.46798 * 299.99942 * 1 2 3 31 31 H 1.09001 * 109.46960 * 60.00137 * 1 2 3 32 32 H 1.09005 * 109.46720 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47185 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.46584 * 299.99834 * 3 2 1 35 35 H 1.08997 * 109.46798 * 59.99792 * 3 2 1 36 36 H 1.08998 * 109.46800 * 299.99993 * 4 2 1 37 37 H 1.09009 * 109.47218 * 59.99678 * 4 2 1 38 38 H 1.08997 * 109.47755 * 179.97438 * 4 2 1 39 39 H 1.08997 * 109.47677 * 299.99977 * 5 2 1 40 40 H 1.09002 * 109.47092 * 180.02562 * 5 2 1 41 41 H 1.08997 * 109.46918 * 59.99745 * 6 5 2 42 42 H 1.09002 * 109.46869 * 299.99773 * 6 5 2 43 43 H 1.09007 * 109.88039 * 59.47859 * 10 9 7 44 44 H 1.09000 * 110.01257 * 298.39025 * 10 9 7 45 45 H 0.96989 * 120.00121 * 88.61302 * 13 11 10 46 46 H 0.97003 * 119.99824 * 180.02562 * 17 16 14 47 47 H 1.07991 * 126.91601 * 0.22443 * 25 24 22 48 48 H 1.08004 * 126.74797 * 180.02562 * 26 25 24 49 49 H 1.08994 * 110.36800 * 85.32928 * 29 9 7 50 50 H 1.09000 * 110.36301 * 323.01177 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7211 1.2493 6 6 1.5301 -2.1637 1.2493 7 6 2.0319 -2.8738 2.4801 8 8 2.7292 -2.2844 3.2785 9 7 1.7059 -4.1640 2.6937 10 6 0.8729 -4.9946 1.8119 11 6 0.7967 -6.4004 2.4441 12 1 -0.1114 -6.5076 3.0374 13 7 0.8666 -7.4402 1.4145 14 6 -0.2840 -7.9272 0.8539 15 1 -1.2430 -7.5444 1.1706 16 6 -0.2178 -8.9129 -0.1213 17 7 0.9509 -9.3790 -0.5074 18 14 -1.7873 -9.5767 -0.8864 19 1 -2.1366 -8.7667 -2.0810 20 1 -1.5816 -10.9908 -1.2901 21 1 -2.8915 -9.5001 0.1036 22 6 2.0540 -6.4416 3.3523 23 1 1.9122 -7.1310 4.1846 24 7 3.2481 -6.7937 2.5801 25 6 4.0193 -5.9329 1.8761 26 6 5.0026 -6.6774 1.3186 27 7 4.7876 -7.9404 1.7032 28 7 3.7407 -7.9757 2.4499 29 6 2.1264 -4.9765 3.8498 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6768 -1.7489 -1.2491 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7208 -1.2494 39 1 1.6767 -0.2073 2.1393 40 1 3.1300 -0.7207 1.2495 41 1 1.8935 -2.6775 0.3593 42 1 0.4401 -2.1638 1.2493 43 1 1.3275 -5.0570 0.8231 44 1 -0.1274 -4.5686 1.7335 45 1 1.7278 -7.7838 1.1299 46 1 0.9972 -10.0675 -1.1892 47 1 3.8781 -4.8668 1.7782 48 1 5.8035 -6.3216 0.6873 49 1 1.4451 -4.8260 4.6871 50 1 3.1465 -4.7243 4.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130054658.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:43 Heat of formation + Delta-G solvation = 74.460069 kcal Electronic energy + Delta-G solvation = -30564.198248 eV Core-core repulsion = 26629.099191 eV Total energy + Delta-G solvation = -3935.099058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.85404 -40.18821 -38.39316 -37.39087 -34.32154 -33.54177 -31.55905 -31.27657 -30.50709 -29.34901 -27.75500 -27.48428 -27.46129 -25.23996 -23.92992 -23.24141 -22.17995 -21.61100 -20.15560 -19.31359 -18.70454 -17.70296 -17.51897 -16.99947 -16.05253 -15.68931 -15.47201 -14.92091 -14.68301 -14.66911 -14.50867 -14.18328 -13.97376 -13.73158 -13.60767 -13.30904 -13.03056 -12.78667 -12.71340 -12.51525 -12.24711 -12.04228 -12.00867 -11.85578 -11.70336 -11.30639 -11.23551 -11.16718 -11.00061 -10.95121 -10.76055 -10.70437 -10.66112 -10.44666 -10.25025 -9.97889 -9.88944 -9.59820 -9.15354 -8.88853 -8.66507 -7.28278 -5.93271 -3.29834 2.07602 2.60425 2.69706 2.89726 3.10113 3.32510 3.37639 3.40934 4.11192 4.41111 4.44685 4.55669 4.62643 4.63030 4.86792 4.89280 4.93274 5.04809 5.14930 5.22292 5.29960 5.35232 5.42834 5.44138 5.44796 5.46388 5.48085 5.53203 5.59337 5.61050 5.67179 5.71779 5.74882 5.83746 5.85650 5.86986 5.98667 6.01553 6.08291 6.18817 6.20550 6.22480 6.25344 6.33975 6.58039 7.03875 7.45862 7.50793 8.12115 8.19345 9.03421 9.32335 9.80027 10.14344 11.26291 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009661 B = 0.003897 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.605679 B = 7183.055865 C = 8731.240003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 C -0.140 4.140 4 C -0.147 4.147 5 C -0.091 4.091 6 C -0.140 4.140 7 C 0.528 3.472 8 O -0.548 6.548 9 N -0.619 5.619 10 C 0.066 3.934 11 C 0.167 3.833 12 H 0.093 0.907 13 N -0.706 5.706 14 C -0.268 4.268 15 H 0.075 0.925 16 C 0.002 3.998 17 N -0.914 5.914 18 Si 0.910 3.090 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.110 3.890 23 H 0.132 0.868 24 N -0.268 5.268 25 C -0.046 4.046 26 C -0.058 4.058 27 N -0.272 5.272 28 N -0.064 5.064 29 C 0.104 3.896 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.393 0.607 46 H 0.260 0.740 47 H 0.175 0.825 48 H 0.182 0.818 49 H 0.096 0.904 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 18.297 3.901 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.204 4.204 5 C -0.129 4.129 6 C -0.180 4.180 7 C 0.318 3.682 8 O -0.426 6.426 9 N -0.354 5.354 10 C -0.060 4.060 11 C 0.052 3.948 12 H 0.110 0.890 13 N -0.347 5.347 14 C -0.398 4.398 15 H 0.093 0.907 16 C -0.197 4.197 17 N -0.559 5.559 18 Si 0.740 3.260 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.006 3.994 23 H 0.150 0.850 24 N -0.062 5.062 25 C -0.197 4.197 26 C -0.215 4.215 27 N -0.138 5.138 28 N -0.043 5.043 29 C -0.021 4.021 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.230 0.770 46 H 0.070 0.930 47 H 0.192 0.808 48 H 0.199 0.801 49 H 0.114 0.886 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.005 17.074 4.594 17.710 hybrid contribution -0.665 0.686 -1.023 1.400 sum 0.340 17.759 3.571 18.118 Atomic orbital electron populations 1.21959 0.94631 1.02081 1.01631 1.20578 0.95701 0.95497 0.95340 1.21849 1.01024 0.95286 1.01572 1.21965 1.01099 1.00584 0.96745 1.21389 1.01243 0.92916 0.97305 1.21813 1.02919 0.96906 0.96346 1.20523 0.79898 0.79999 0.87810 1.90693 1.38755 1.65353 1.47808 1.48677 1.51745 1.10789 1.24217 1.23487 0.94486 0.93054 0.94943 1.21556 0.93984 0.88424 0.90862 0.88956 1.42420 1.08053 1.41188 1.42991 1.19169 0.86132 1.17475 1.17064 0.90690 1.24851 0.96842 0.98807 0.99188 1.69704 1.22507 1.30910 1.32761 0.86177 0.82285 0.78309 0.79223 1.21482 1.21530 1.20508 1.23359 0.83465 0.96777 0.95835 0.84998 1.47156 1.19950 1.05912 1.33142 1.23408 0.95606 0.98954 1.01750 1.23458 1.02211 0.90265 1.05599 1.75103 1.09142 1.19399 1.10110 1.78401 1.06186 1.03127 1.16606 1.22448 1.02476 0.87219 0.89911 0.92699 0.92743 0.92204 0.92640 0.92746 0.92708 0.92123 0.92747 0.92580 0.91325 0.91237 0.88499 0.88620 0.90518 0.91043 0.76992 0.93005 0.80777 0.80087 0.88626 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.12 37.16 0.30 -0.86 16 2 C -0.07 -0.59 0.80 -154.51 -0.12 -0.72 16 3 C -0.14 -1.07 8.47 37.16 0.31 -0.76 16 4 C -0.15 -1.24 8.12 37.16 0.30 -0.94 16 5 C -0.09 -0.89 3.56 -26.73 -0.10 -0.99 16 6 C -0.14 -1.46 4.19 -27.88 -0.12 -1.57 16 7 C 0.53 6.85 7.61 -10.99 -0.08 6.77 16 8 O -0.55 -8.65 16.24 5.55 0.09 -8.56 16 9 N -0.62 -7.81 2.17 -170.52 -0.37 -8.18 16 10 C 0.07 0.94 5.86 -3.07 -0.02 0.92 16 11 C 0.17 2.76 3.48 -66.10 -0.23 2.53 16 12 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 13 N -0.71 -16.16 5.12 -51.65 -0.26 -16.43 16 14 C -0.27 -6.84 9.96 -15.06 -0.15 -6.99 16 15 H 0.08 1.80 7.83 -52.49 -0.41 1.39 16 16 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 17 N -0.91 -27.02 13.06 55.49 0.72 -26.30 16 18 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.11 1.59 4.05 -65.78 -0.27 1.33 16 23 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 24 N -0.27 -4.64 2.44 -52.68 -0.13 -4.77 16 25 C -0.05 -0.74 10.01 -17.04 -0.17 -0.91 16 26 C -0.06 -0.99 12.05 -17.74 -0.21 -1.20 16 27 N -0.27 -5.62 12.41 30.24 0.38 -5.25 16 28 N -0.06 -1.33 12.27 60.35 0.74 -0.59 16 29 C 0.10 1.24 5.89 -2.53 -0.01 1.22 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 37 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.10 0.98 6.43 -51.93 -0.33 0.65 16 42 H 0.10 0.90 6.43 -51.93 -0.33 0.57 16 43 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.39 10.07 6.00 -40.82 -0.24 9.83 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.18 2.48 6.78 -52.49 -0.36 2.12 16 48 H 0.18 2.39 8.06 -52.48 -0.42 1.97 16 49 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.09 1.09 7.77 -51.93 -0.40 0.69 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -32.54 396.44 -6.76 -39.30 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -8.21 Total: 10.77 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.66 Total: -2.21 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 1.08 Total: -61.51 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.54 -6.76 -39.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130054658.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.756 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds