Wall clock time and date at job start Tue Mar 31 2020 20:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.46985 * 2 1 4 4 C 1.52995 * 109.47540 * 239.99941 * 2 1 3 5 5 C 1.52999 * 109.47177 * 119.99542 * 2 1 3 6 6 C 1.53002 * 109.47064 * 60.00654 * 5 2 1 7 7 C 1.50696 * 109.47224 * 180.02562 * 6 5 2 8 8 O 1.21286 * 120.00211 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99996 * 179.97438 * 7 6 5 10 10 C 1.47020 * 125.65070 * 0.02562 * 9 7 6 11 11 C 1.54322 * 107.27273 * 178.89483 * 10 9 7 12 12 H 1.09001 * 110.71808 * 96.17377 * 11 10 9 13 13 N 1.46503 * 110.87256 * 219.37487 * 11 10 9 14 14 C 1.36940 * 119.99701 * 268.61188 * 13 11 10 15 15 H 1.07998 * 120.00344 * 0.02562 * 14 13 11 16 16 C 1.38815 * 119.99888 * 180.02562 * 14 13 11 17 17 N 1.31616 * 119.99639 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00319 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47176 * 89.99401 * 18 16 14 20 20 H 1.48493 * 109.47455 * 210.00101 * 18 16 14 21 21 H 1.48505 * 109.46761 * 330.00137 * 18 16 14 22 22 C 1.55156 * 102.94391 * 337.81125 * 11 10 9 23 23 H 1.08996 * 111.00368 * 153.61681 * 22 11 10 24 24 N 1.46502 * 111.00191 * 277.42340 * 22 11 10 25 25 C 1.35322 * 125.86299 * 84.71758 * 24 22 11 26 26 C 1.35351 * 106.16806 * 180.26356 * 25 24 22 27 27 N 1.33769 * 106.50107 * 0.02562 * 26 25 24 28 28 N 1.28629 * 108.88659 * 359.97438 * 27 26 25 29 29 C 1.47431 * 125.64907 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.46798 * 299.99942 * 1 2 3 31 31 H 1.09001 * 109.46960 * 60.00137 * 1 2 3 32 32 H 1.09005 * 109.46720 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47185 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.46584 * 299.99834 * 3 2 1 35 35 H 1.08997 * 109.46798 * 59.99792 * 3 2 1 36 36 H 1.08998 * 109.46800 * 299.99993 * 4 2 1 37 37 H 1.09009 * 109.47218 * 59.99678 * 4 2 1 38 38 H 1.08997 * 109.47755 * 179.97438 * 4 2 1 39 39 H 1.08997 * 109.47677 * 299.99977 * 5 2 1 40 40 H 1.09002 * 109.47092 * 180.02562 * 5 2 1 41 41 H 1.08997 * 109.46918 * 59.99745 * 6 5 2 42 42 H 1.09002 * 109.46869 * 299.99773 * 6 5 2 43 43 H 1.09007 * 109.88039 * 59.47859 * 10 9 7 44 44 H 1.09000 * 110.01257 * 298.39025 * 10 9 7 45 45 H 0.96989 * 120.00121 * 88.61302 * 13 11 10 46 46 H 0.97003 * 119.99824 * 180.02562 * 17 16 14 47 47 H 1.07991 * 126.91601 * 0.22443 * 25 24 22 48 48 H 1.08004 * 126.74797 * 180.02562 * 26 25 24 49 49 H 1.08994 * 110.36800 * 85.32928 * 29 9 7 50 50 H 1.09000 * 110.36301 * 323.01177 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7211 1.2493 6 6 1.5301 -2.1637 1.2493 7 6 2.0319 -2.8738 2.4801 8 8 2.7292 -2.2844 3.2785 9 7 1.7059 -4.1640 2.6937 10 6 0.8729 -4.9946 1.8119 11 6 0.7967 -6.4004 2.4441 12 1 -0.1114 -6.5076 3.0374 13 7 0.8666 -7.4402 1.4145 14 6 -0.2840 -7.9272 0.8539 15 1 -1.2430 -7.5444 1.1706 16 6 -0.2178 -8.9129 -0.1213 17 7 0.9509 -9.3790 -0.5074 18 14 -1.7873 -9.5767 -0.8864 19 1 -2.1366 -8.7667 -2.0810 20 1 -1.5816 -10.9908 -1.2901 21 1 -2.8915 -9.5001 0.1036 22 6 2.0540 -6.4416 3.3523 23 1 1.9122 -7.1310 4.1846 24 7 3.2481 -6.7937 2.5801 25 6 4.0193 -5.9329 1.8761 26 6 5.0026 -6.6774 1.3186 27 7 4.7876 -7.9404 1.7032 28 7 3.7407 -7.9757 2.4499 29 6 2.1264 -4.9765 3.8498 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6768 -1.7489 -1.2491 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7208 -1.2494 39 1 1.6767 -0.2073 2.1393 40 1 3.1300 -0.7207 1.2495 41 1 1.8935 -2.6775 0.3593 42 1 0.4401 -2.1638 1.2493 43 1 1.3275 -5.0570 0.8231 44 1 -0.1274 -4.5686 1.7335 45 1 1.7278 -7.7838 1.1299 46 1 0.9972 -10.0675 -1.1892 47 1 3.8781 -4.8668 1.7782 48 1 5.8035 -6.3216 0.6873 49 1 1.4451 -4.8260 4.6871 50 1 3.1465 -4.7243 4.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130054658.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:41 Heat of formation + Delta-G solvation = 54.581673 kcal Electronic energy + Delta-G solvation = -30565.060240 eV Core-core repulsion = 26629.099191 eV Total energy + Delta-G solvation = -3935.961049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.23007 -41.27885 -39.40171 -38.33537 -35.96431 -34.88267 -33.09444 -32.40395 -31.86582 -30.57608 -29.14746 -28.10794 -28.09411 -26.35511 -25.60114 -24.33306 -23.58348 -22.92901 -21.48606 -20.35502 -19.45216 -19.40551 -18.77515 -18.13532 -17.11043 -17.09237 -16.72895 -16.33005 -15.94117 -15.76863 -15.42340 -15.28888 -15.13714 -14.91336 -14.82668 -14.44820 -14.27825 -13.84382 -13.68065 -13.60805 -13.38505 -13.05008 -12.92335 -12.75360 -12.71125 -12.63702 -12.58868 -12.50703 -12.42035 -12.09460 -11.99380 -11.90593 -11.78865 -11.47621 -11.38579 -11.38003 -11.21619 -10.91322 -10.87000 -10.27304 -9.76160 -9.15715 -7.95499 -5.30013 0.71508 1.43858 1.48835 1.50182 1.58036 1.58493 1.69810 1.84828 2.53468 3.00089 3.25660 3.50330 3.59271 3.67326 3.70339 3.84350 3.93727 4.04029 4.07154 4.11613 4.20693 4.26754 4.29880 4.34843 4.41498 4.49803 4.57630 4.65136 4.71047 4.81010 4.83408 4.85976 4.91705 4.96897 5.01278 5.06305 5.08662 5.12729 5.15319 5.21631 5.28125 5.30092 5.43791 5.50969 5.55831 5.57026 5.73000 6.20327 6.39298 7.08384 7.29545 7.61329 7.98089 8.19394 9.25848 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009661 B = 0.003897 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.605679 B = 7183.055865 C = 8731.240003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.147 4.147 5 C -0.085 4.085 6 C -0.136 4.136 7 C 0.530 3.470 8 O -0.575 6.575 9 N -0.614 5.614 10 C 0.085 3.915 11 C 0.158 3.842 12 H 0.113 0.887 13 N -0.726 5.726 14 C -0.249 4.249 15 H 0.093 0.907 16 C -0.068 4.068 17 N -0.964 5.964 18 Si 0.972 3.028 19 H -0.286 1.286 20 H -0.305 1.305 21 H -0.262 1.262 22 C 0.107 3.893 23 H 0.145 0.855 24 N -0.263 5.263 25 C -0.037 4.037 26 C -0.065 4.065 27 N -0.310 5.310 28 N -0.106 5.106 29 C 0.112 3.888 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.056 0.944 44 H 0.092 0.908 45 H 0.378 0.622 46 H 0.249 0.751 47 H 0.195 0.805 48 H 0.214 0.786 49 H 0.129 0.871 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 20.673 4.612 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.204 4.204 5 C -0.123 4.123 6 C -0.175 4.175 7 C 0.321 3.679 8 O -0.454 6.454 9 N -0.349 5.349 10 C -0.041 4.041 11 C 0.045 3.955 12 H 0.130 0.870 13 N -0.366 5.366 14 C -0.380 4.380 15 H 0.111 0.889 16 C -0.261 4.261 17 N -0.613 5.613 18 Si 0.801 3.199 19 H -0.213 1.213 20 H -0.233 1.233 21 H -0.187 1.187 22 C 0.003 3.997 23 H 0.163 0.837 24 N -0.057 5.057 25 C -0.189 4.189 26 C -0.222 4.222 27 N -0.175 5.175 28 N -0.084 5.084 29 C -0.012 4.012 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.128 0.872 43 H 0.075 0.925 44 H 0.110 0.890 45 H 0.212 0.788 46 H 0.057 0.943 47 H 0.212 0.788 48 H 0.230 0.770 49 H 0.146 0.854 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.595 19.494 5.365 20.228 hybrid contribution -0.156 0.086 -1.148 1.162 sum -0.751 19.580 4.217 20.043 Atomic orbital electron populations 1.21957 0.94089 1.02144 1.02079 1.20547 0.96082 0.95673 0.94455 1.21847 1.00930 0.94880 1.02046 1.21968 1.00996 1.00382 0.97077 1.21327 1.00456 0.92717 0.97773 1.21849 1.03713 0.96857 0.95112 1.20898 0.79212 0.79736 0.88046 1.90693 1.40002 1.65811 1.48925 1.48622 1.51458 1.10706 1.24119 1.23036 0.95579 0.91779 0.93712 1.21883 0.95805 0.87844 0.89939 0.86977 1.42586 1.06608 1.42953 1.44445 1.19675 0.87580 1.15586 1.15208 0.88938 1.25628 0.99247 1.00329 1.00930 1.69892 1.24792 1.32341 1.34240 0.85172 0.79519 0.76550 0.78631 1.21349 1.23266 1.18662 1.23589 0.81747 0.98939 0.95385 0.83708 1.47372 1.20237 1.05261 1.32784 1.23721 0.94896 0.99532 1.00746 1.24093 1.03239 0.89243 1.05644 1.75038 1.09854 1.21459 1.11113 1.78325 1.07158 1.04822 1.18144 1.22542 1.03387 0.84921 0.90322 0.92445 0.92163 0.92300 0.92844 0.91965 0.92560 0.92592 0.92125 0.92802 0.92032 0.92427 0.88125 0.87186 0.92530 0.88972 0.78827 0.94269 0.78821 0.76979 0.85373 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.12 71.98 0.58 -1.39 16 2 C -0.07 -1.00 0.80 -52.18 -0.04 -1.04 16 3 C -0.14 -1.89 8.47 71.99 0.61 -1.28 16 4 C -0.15 -2.22 8.12 71.98 0.58 -1.64 16 5 C -0.08 -1.52 3.56 30.59 0.11 -1.41 16 6 C -0.14 -2.50 4.19 29.85 0.12 -2.37 16 7 C 0.53 12.40 7.61 87.66 0.67 13.06 16 8 O -0.57 -16.88 16.24 -3.05 -0.05 -16.93 16 9 N -0.61 -13.69 2.17 -811.80 -1.76 -15.45 16 10 C 0.08 2.17 5.86 86.73 0.51 2.68 16 11 C 0.16 4.85 3.48 46.18 0.16 5.01 16 12 H 0.11 3.05 8.09 -2.39 -0.02 3.03 16 13 N -0.73 -32.74 5.12 -317.32 -1.63 -34.36 16 14 C -0.25 -12.45 9.96 84.03 0.84 -11.62 16 15 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16 16 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 17 N -0.96 -58.69 13.06 21.65 0.28 -58.41 16 18 Si 0.97 43.96 29.55 68.60 2.03 45.98 16 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.31 -14.46 7.11 99.48 0.71 -13.76 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 22 C 0.11 2.88 4.05 46.38 0.19 3.07 16 23 H 0.15 3.52 8.14 -2.39 -0.02 3.50 16 24 N -0.26 -8.92 2.44 -320.60 -0.78 -9.70 16 25 C -0.04 -1.16 10.01 83.49 0.84 -0.32 16 26 C -0.06 -2.16 12.05 83.73 1.01 -1.15 16 27 N -0.31 -13.07 12.41 -58.25 -0.72 -13.80 16 28 N -0.11 -4.48 12.27 37.02 0.45 -4.02 16 29 C 0.11 2.33 5.89 86.85 0.51 2.84 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.80 6.43 -2.38 -0.02 0.79 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.89 6.43 -2.39 -0.02 0.88 16 37 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 40 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 41 H 0.10 1.82 6.43 -2.39 -0.02 1.81 16 42 H 0.11 1.74 6.43 -2.39 -0.02 1.72 16 43 H 0.06 1.73 8.03 -2.38 -0.02 1.71 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.38 19.54 6.00 -92.72 -0.56 18.99 16 46 H 0.25 14.95 8.31 -92.71 -0.77 14.17 16 47 H 0.19 5.13 6.78 -2.92 -0.02 5.11 16 48 H 0.21 5.35 8.06 -2.91 -0.02 5.33 16 49 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.09 1.91 7.77 -2.39 -0.02 1.90 16 Total: -1.00 -72.20 396.44 5.35 -66.84 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: 0.38 Total: 38.67 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 7.16 Total: 1.19 kcal Atomic # 7 Polarization: -131.59 SS G_CDS: -4.16 Total: -135.75 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.05 Total: -16.93 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -72.20 5.35 -66.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130054658.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.425 kcal (2) G-P(sol) polarization free energy of solvation -72.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds