Wall clock time and date at job start Tue Mar 31 2020 20:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47619 * 2 1 4 4 C 1.53003 * 109.46933 * 301.59616 * 3 2 1 5 5 C 1.52997 * 109.47271 * 294.97717 * 4 3 2 6 6 C 1.53005 * 109.47291 * 61.59310 * 3 2 1 7 7 C 1.50705 * 109.46958 * 65.00413 * 6 3 2 8 8 O 1.21284 * 119.99868 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99903 * 180.02562 * 7 6 3 10 10 C 1.47012 * 125.64940 * 0.02562 * 9 7 6 11 11 C 1.54322 * 107.27172 * 178.90528 * 10 9 7 12 12 H 1.09004 * 110.72306 * 96.17062 * 11 10 9 13 13 N 1.46496 * 110.72181 * 219.26578 * 11 10 9 14 14 C 1.36946 * 120.00199 * 271.15781 * 13 11 10 15 15 H 1.08002 * 119.99413 * 359.97438 * 14 13 11 16 16 C 1.38815 * 119.99937 * 180.02562 * 14 13 11 17 17 N 1.31615 * 119.99872 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99614 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47371 * 59.99638 * 18 16 14 20 20 H 1.48497 * 109.46906 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46934 * 299.99565 * 18 16 14 22 22 C 1.55157 * 103.10221 * 337.71968 * 11 10 9 23 23 H 1.09002 * 111.00367 * 153.66402 * 22 11 10 24 24 N 1.46502 * 111.00178 * 277.51510 * 22 11 10 25 25 C 1.35317 * 125.86641 * 84.71318 * 24 22 11 26 26 C 1.35351 * 106.17046 * 179.90123 * 25 24 22 27 27 N 1.33771 * 106.49882 * 0.35528 * 26 25 24 28 28 N 1.28629 * 108.88674 * 359.77271 * 27 26 25 29 29 C 1.47426 * 125.64553 * 179.97438 * 9 7 6 30 30 H 1.08996 * 109.47233 * 181.94479 * 1 2 3 31 31 H 1.09004 * 109.46999 * 301.95409 * 1 2 3 32 32 H 1.08997 * 109.46748 * 61.94746 * 1 2 3 33 33 H 1.09003 * 109.47443 * 239.99268 * 2 1 3 34 34 H 1.09009 * 109.46818 * 119.99747 * 2 1 3 35 35 H 1.09004 * 109.47826 * 181.59832 * 3 2 1 36 36 H 1.09009 * 109.46875 * 54.97826 * 4 3 2 37 37 H 1.08999 * 109.47358 * 174.97738 * 4 3 2 38 38 H 1.09007 * 109.47068 * 65.79724 * 5 4 3 39 39 H 1.09000 * 109.47566 * 185.79645 * 5 4 3 40 40 H 1.08994 * 109.47159 * 305.79877 * 5 4 3 41 41 H 1.08998 * 109.46883 * 305.00665 * 6 3 2 42 42 H 1.09004 * 109.47463 * 185.00293 * 6 3 2 43 43 H 1.09001 * 109.88507 * 59.48529 * 10 9 7 44 44 H 1.09004 * 110.01344 * 298.39692 * 10 9 7 45 45 H 0.97003 * 120.00082 * 91.15641 * 13 11 10 46 46 H 0.97001 * 119.99211 * 180.02562 * 17 16 14 47 47 H 1.08001 * 126.91310 * 0.02562 * 25 24 22 48 48 H 1.08006 * 126.75071 * 180.12269 * 26 25 24 49 49 H 1.08998 * 110.37005 * 323.00771 * 29 9 7 50 50 H 1.09002 * 110.36352 * 85.21679 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4976 2.1752 -1.2287 5 6 2.0750 1.5422 -2.4963 6 6 1.5632 2.1521 1.2688 7 6 2.1960 1.5055 2.4741 8 8 2.9542 0.5696 2.3321 9 7 1.9194 1.9673 3.7097 10 6 1.0224 3.0887 4.0243 11 6 0.9938 3.2355 5.5603 12 1 1.7015 3.9970 5.8882 13 7 -0.3585 3.5529 6.0256 14 6 -0.7635 4.8581 6.1142 15 1 -0.0857 5.6535 5.8414 16 6 -2.0448 5.1589 6.5556 17 7 -2.8705 4.1895 6.8885 18 14 -2.5973 6.9392 6.6758 19 1 -2.5219 7.5725 5.3347 20 1 -3.9966 6.9909 7.1703 21 1 -1.7124 7.6696 7.6186 22 6 1.4295 1.8313 6.0560 23 1 1.8939 1.8912 7.0403 24 7 0.2957 0.9037 6.0682 25 6 -0.1505 0.1831 5.0133 26 6 -1.2050 -0.5346 5.4659 27 7 -1.3553 -0.2162 6.7565 28 7 -0.4508 0.6382 7.0826 29 6 2.4655 1.4308 4.9696 30 1 -0.3633 -1.0270 0.0349 31 1 -0.3633 0.5439 0.8720 32 1 -0.3633 0.4833 -0.9069 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.1298 1.4426 -0.0287 36 1 0.4104 2.0983 -1.2469 37 1 1.7868 3.2251 -1.1828 38 1 1.7019 0.5228 -2.5957 39 1 1.7715 2.1264 -3.3649 40 1 3.1629 1.5262 -2.4313 41 1 0.4785 2.0746 1.3425 42 1 1.8505 3.2028 1.2274 43 1 0.0196 2.8766 3.6535 44 1 1.3986 4.0059 3.5712 45 1 -0.9672 2.8386 6.2709 46 1 -3.7660 4.3998 7.1966 47 1 0.2547 0.1797 4.0122 48 1 -1.8089 -1.2254 4.8962 49 1 2.5550 0.3460 4.9128 50 1 3.4352 1.8800 5.1844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130059269.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:47 Heat of formation + Delta-G solvation = 77.066545 kcal Electronic energy + Delta-G solvation = -30871.085332 eV Core-core repulsion = 26936.099300 eV Total energy + Delta-G solvation = -3934.986032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.85619 -40.28331 -38.35825 -36.81076 -34.31422 -33.54100 -31.43445 -31.35206 -30.68841 -30.36052 -29.02768 -27.73530 -25.50168 -24.10202 -23.69758 -23.33690 -22.18105 -21.64524 -20.17588 -19.64034 -18.76601 -17.68207 -17.48669 -16.97109 -16.22686 -15.72282 -15.55210 -15.19482 -14.98514 -14.70802 -14.60293 -14.01787 -13.73071 -13.67386 -13.41049 -13.27119 -13.03100 -12.93920 -12.79567 -12.49307 -12.24040 -12.11307 -11.97330 -11.73009 -11.54919 -11.26640 -11.25753 -11.16747 -11.00114 -10.92858 -10.60330 -10.55710 -10.47401 -10.44555 -10.27932 -9.96026 -9.76643 -9.56539 -9.14531 -8.89190 -8.64724 -7.27733 -5.92680 -3.29335 2.07185 2.60729 2.68982 2.89917 3.09675 3.33061 3.37738 3.40389 4.09637 4.41510 4.49099 4.61352 4.66541 4.71461 4.89187 4.92094 4.98017 5.09821 5.19424 5.22272 5.29622 5.30212 5.38126 5.42463 5.46096 5.48760 5.49430 5.53090 5.61894 5.63852 5.66856 5.72239 5.79120 5.86072 5.91463 5.99531 6.01905 6.06891 6.15739 6.18685 6.21099 6.30650 6.35310 6.45662 6.57649 7.03399 7.46607 7.50786 8.13547 8.20095 9.02850 9.32939 9.80724 10.15086 11.26828 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.003909 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.084826 B = 7161.828522 C = 8380.640998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.126 4.126 3 C -0.070 4.070 4 C -0.124 4.124 5 C -0.151 4.151 6 C -0.137 4.137 7 C 0.530 3.470 8 O -0.543 6.543 9 N -0.619 5.619 10 C 0.067 3.933 11 C 0.166 3.834 12 H 0.091 0.909 13 N -0.707 5.707 14 C -0.269 4.269 15 H 0.074 0.926 16 C 0.002 3.998 17 N -0.915 5.915 18 Si 0.910 3.090 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.283 1.283 22 C 0.111 3.889 23 H 0.133 0.867 24 N -0.268 5.268 25 C -0.045 4.045 26 C -0.058 4.058 27 N -0.271 5.271 28 N -0.064 5.064 29 C 0.104 3.896 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.394 0.606 46 H 0.260 0.740 47 H 0.175 0.825 48 H 0.182 0.818 49 H 0.087 0.913 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.999 -5.851 -13.905 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.163 4.163 3 C -0.088 4.088 4 C -0.162 4.162 5 C -0.208 4.208 6 C -0.177 4.177 7 C 0.320 3.680 8 O -0.421 6.421 9 N -0.354 5.354 10 C -0.059 4.059 11 C 0.051 3.949 12 H 0.109 0.891 13 N -0.348 5.348 14 C -0.399 4.399 15 H 0.092 0.908 16 C -0.197 4.197 17 N -0.559 5.559 18 Si 0.740 3.260 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.210 1.210 22 C 0.007 3.993 23 H 0.150 0.850 24 N -0.062 5.062 25 C -0.196 4.196 26 C -0.215 4.215 27 N -0.137 5.137 28 N -0.044 5.044 29 C -0.020 4.020 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.231 0.769 46 H 0.070 0.930 47 H 0.192 0.808 48 H 0.199 0.801 49 H 0.105 0.895 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.045 -5.891 -12.512 17.698 hybrid contribution -0.421 0.814 -1.119 1.446 sum 10.623 -5.077 -13.631 18.012 Atomic orbital electron populations 1.21921 0.96372 1.01460 1.01728 1.21677 0.95457 0.96164 1.03042 1.20948 1.00710 0.95066 0.92126 1.21653 1.01076 0.99268 0.94180 1.21777 1.00931 1.00923 0.97190 1.21820 1.02483 1.00944 0.92430 1.20445 0.81261 0.83175 0.83126 1.90659 1.37065 1.28864 1.85544 1.48681 1.47069 1.34600 1.05082 1.23491 0.93666 0.88021 1.00761 1.21564 0.91553 0.91446 0.90291 0.89128 1.42425 1.08758 1.06810 1.76827 1.19122 0.97121 0.83479 1.40167 0.90763 1.24848 0.96552 0.97629 1.00642 1.69694 1.07281 1.30609 1.48331 0.86253 0.77810 0.84087 0.77831 1.21047 1.21502 1.20950 1.23410 0.84042 0.90065 1.01794 0.84954 1.47147 1.22697 1.28780 1.07539 1.23403 1.00868 0.99514 0.95808 1.23456 0.99742 1.04945 0.93403 1.75101 1.16006 1.09489 1.13113 1.78399 1.01040 1.12735 1.12220 1.22516 0.95970 1.00939 0.82570 0.93009 0.92701 0.92631 0.92229 0.90108 0.90608 0.91381 0.92108 0.92528 0.93007 0.92828 0.88415 0.88962 0.90502 0.91074 0.76945 0.92955 0.80770 0.80101 0.89457 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.21 37.16 0.34 -1.16 16 2 C -0.13 -1.29 5.18 -26.73 -0.14 -1.42 16 3 C -0.07 -0.68 1.81 -90.62 -0.16 -0.84 16 4 C -0.12 -1.03 5.15 -26.73 -0.14 -1.17 16 5 C -0.15 -1.15 9.52 37.16 0.35 -0.79 16 6 C -0.14 -1.43 4.18 -27.88 -0.12 -1.54 16 7 C 0.53 6.72 7.32 -10.98 -0.08 6.64 16 8 O -0.54 -8.15 14.23 5.55 0.08 -8.08 16 9 N -0.62 -7.73 2.18 -170.23 -0.37 -8.10 16 10 C 0.07 0.95 5.86 -3.07 -0.02 0.93 16 11 C 0.17 2.75 3.46 -66.10 -0.23 2.52 16 12 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 13 N -0.71 -16.22 5.12 -51.65 -0.26 -16.49 16 14 C -0.27 -6.86 9.97 -15.05 -0.15 -7.01 16 15 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 16 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 17 N -0.91 -27.06 13.06 55.49 0.72 -26.34 16 18 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.11 1.60 4.08 -65.53 -0.27 1.33 16 23 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 24 N -0.27 -4.62 2.45 -52.43 -0.13 -4.75 16 25 C -0.04 -0.72 10.02 -17.04 -0.17 -0.89 16 26 C -0.06 -0.99 12.05 -17.74 -0.21 -1.20 16 27 N -0.27 -5.59 12.41 30.24 0.38 -5.22 16 28 N -0.06 -1.34 12.23 60.35 0.74 -0.60 16 29 C 0.10 1.23 5.90 -2.28 -0.01 1.22 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.56 6.26 -51.93 -0.33 0.23 16 32 H 0.05 0.48 6.39 -51.93 -0.33 0.15 16 33 H 0.06 0.57 6.78 -51.93 -0.35 0.21 16 34 H 0.08 1.01 5.93 -51.92 -0.31 0.70 16 35 H 0.08 0.82 7.96 -51.93 -0.41 0.41 16 36 H 0.07 0.56 6.17 -51.92 -0.32 0.24 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.43 6.89 -51.93 -0.36 0.07 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 1.01 6.18 -51.93 -0.32 0.69 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.26 8.03 -51.93 -0.42 0.85 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.39 10.08 5.95 -40.82 -0.24 9.84 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.18 2.46 6.79 -52.49 -0.36 2.10 16 48 H 0.18 2.38 8.06 -52.48 -0.42 1.96 16 49 H 0.09 1.07 7.77 -51.93 -0.40 0.67 16 50 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -32.12 390.31 -7.01 -39.13 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -7.92 Total: 11.73 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.10 Total: -3.43 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 1.07 Total: -61.49 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.08 Total: -8.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.12 -7.01 -39.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130059269.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.196 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds