Wall clock time and date at job start Tue Mar 31 2020 20:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47619 * 2 1 4 4 C 1.53003 * 109.46933 * 301.59616 * 3 2 1 5 5 C 1.52997 * 109.47271 * 294.97717 * 4 3 2 6 6 C 1.53005 * 109.47291 * 61.59310 * 3 2 1 7 7 C 1.50705 * 109.46958 * 65.00413 * 6 3 2 8 8 O 1.21284 * 119.99868 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99903 * 180.02562 * 7 6 3 10 10 C 1.47012 * 125.64940 * 0.02562 * 9 7 6 11 11 C 1.54322 * 107.27172 * 178.90528 * 10 9 7 12 12 H 1.09004 * 110.72306 * 96.17062 * 11 10 9 13 13 N 1.46496 * 110.72181 * 219.26578 * 11 10 9 14 14 C 1.36946 * 120.00199 * 271.15781 * 13 11 10 15 15 H 1.08002 * 119.99413 * 359.97438 * 14 13 11 16 16 C 1.38815 * 119.99937 * 180.02562 * 14 13 11 17 17 N 1.31615 * 119.99872 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99614 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47371 * 59.99638 * 18 16 14 20 20 H 1.48497 * 109.46906 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46934 * 299.99565 * 18 16 14 22 22 C 1.55157 * 103.10221 * 337.71968 * 11 10 9 23 23 H 1.09002 * 111.00367 * 153.66402 * 22 11 10 24 24 N 1.46502 * 111.00178 * 277.51510 * 22 11 10 25 25 C 1.35317 * 125.86641 * 84.71318 * 24 22 11 26 26 C 1.35351 * 106.17046 * 179.90123 * 25 24 22 27 27 N 1.33771 * 106.49882 * 0.35528 * 26 25 24 28 28 N 1.28629 * 108.88674 * 359.77271 * 27 26 25 29 29 C 1.47426 * 125.64553 * 179.97438 * 9 7 6 30 30 H 1.08996 * 109.47233 * 181.94479 * 1 2 3 31 31 H 1.09004 * 109.46999 * 301.95409 * 1 2 3 32 32 H 1.08997 * 109.46748 * 61.94746 * 1 2 3 33 33 H 1.09003 * 109.47443 * 239.99268 * 2 1 3 34 34 H 1.09009 * 109.46818 * 119.99747 * 2 1 3 35 35 H 1.09004 * 109.47826 * 181.59832 * 3 2 1 36 36 H 1.09009 * 109.46875 * 54.97826 * 4 3 2 37 37 H 1.08999 * 109.47358 * 174.97738 * 4 3 2 38 38 H 1.09007 * 109.47068 * 65.79724 * 5 4 3 39 39 H 1.09000 * 109.47566 * 185.79645 * 5 4 3 40 40 H 1.08994 * 109.47159 * 305.79877 * 5 4 3 41 41 H 1.08998 * 109.46883 * 305.00665 * 6 3 2 42 42 H 1.09004 * 109.47463 * 185.00293 * 6 3 2 43 43 H 1.09001 * 109.88507 * 59.48529 * 10 9 7 44 44 H 1.09004 * 110.01344 * 298.39692 * 10 9 7 45 45 H 0.97003 * 120.00082 * 91.15641 * 13 11 10 46 46 H 0.97001 * 119.99211 * 180.02562 * 17 16 14 47 47 H 1.08001 * 126.91310 * 0.02562 * 25 24 22 48 48 H 1.08006 * 126.75071 * 180.12269 * 26 25 24 49 49 H 1.08998 * 110.37005 * 323.00771 * 29 9 7 50 50 H 1.09002 * 110.36352 * 85.21679 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4976 2.1752 -1.2287 5 6 2.0750 1.5422 -2.4963 6 6 1.5632 2.1521 1.2688 7 6 2.1960 1.5055 2.4741 8 8 2.9542 0.5696 2.3321 9 7 1.9194 1.9673 3.7097 10 6 1.0224 3.0887 4.0243 11 6 0.9938 3.2355 5.5603 12 1 1.7015 3.9970 5.8882 13 7 -0.3585 3.5529 6.0256 14 6 -0.7635 4.8581 6.1142 15 1 -0.0857 5.6535 5.8414 16 6 -2.0448 5.1589 6.5556 17 7 -2.8705 4.1895 6.8885 18 14 -2.5973 6.9392 6.6758 19 1 -2.5219 7.5725 5.3347 20 1 -3.9966 6.9909 7.1703 21 1 -1.7124 7.6696 7.6186 22 6 1.4295 1.8313 6.0560 23 1 1.8939 1.8912 7.0403 24 7 0.2957 0.9037 6.0682 25 6 -0.1505 0.1831 5.0133 26 6 -1.2050 -0.5346 5.4659 27 7 -1.3553 -0.2162 6.7565 28 7 -0.4508 0.6382 7.0826 29 6 2.4655 1.4308 4.9696 30 1 -0.3633 -1.0270 0.0349 31 1 -0.3633 0.5439 0.8720 32 1 -0.3633 0.4833 -0.9069 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.1298 1.4426 -0.0287 36 1 0.4104 2.0983 -1.2469 37 1 1.7868 3.2251 -1.1828 38 1 1.7019 0.5228 -2.5957 39 1 1.7715 2.1264 -3.3649 40 1 3.1629 1.5262 -2.4313 41 1 0.4785 2.0746 1.3425 42 1 1.8505 3.2028 1.2274 43 1 0.0196 2.8766 3.6535 44 1 1.3986 4.0059 3.5712 45 1 -0.9672 2.8386 6.2709 46 1 -3.7660 4.3998 7.1966 47 1 0.2547 0.1797 4.0122 48 1 -1.8089 -1.2254 4.8962 49 1 2.5550 0.3460 4.9128 50 1 3.4352 1.8800 5.1844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130059269.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:46 Heat of formation + Delta-G solvation = 57.587457 kcal Electronic energy + Delta-G solvation = -30871.930009 eV Core-core repulsion = 26936.099300 eV Total energy + Delta-G solvation = -3935.830709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.22801 -41.34262 -39.45497 -37.73212 -35.94326 -34.88000 -33.08969 -32.13171 -31.93880 -31.51110 -30.12917 -29.11404 -26.47559 -25.70924 -24.77247 -24.19490 -23.58066 -22.96746 -21.49890 -20.59769 -19.67308 -19.38252 -18.74799 -18.10664 -17.17356 -17.10208 -16.72449 -16.35921 -16.12691 -15.96078 -15.82422 -15.38254 -15.21205 -14.73133 -14.62139 -14.41425 -14.07594 -13.87603 -13.68446 -13.60432 -13.44023 -13.03247 -12.91646 -12.81226 -12.78668 -12.72179 -12.58595 -12.44980 -12.23864 -12.13417 -11.95355 -11.90923 -11.78356 -11.43294 -11.32632 -11.20021 -11.16362 -10.90295 -10.66355 -10.27237 -9.72717 -9.15375 -7.95263 -5.29873 0.71519 1.43641 1.48877 1.51104 1.57395 1.60985 1.69778 1.86454 2.53583 2.98908 3.26355 3.50115 3.60637 3.68705 3.71208 3.84506 3.96597 4.03997 4.10665 4.17956 4.21568 4.28702 4.34512 4.39976 4.47438 4.51150 4.56795 4.59968 4.65462 4.70890 4.77377 4.84069 4.91710 4.96161 5.00548 5.04785 5.11427 5.13959 5.19835 5.28079 5.34998 5.37499 5.43003 5.50298 5.52379 5.70242 5.72975 6.20547 6.41952 7.12442 7.29746 7.61191 7.98571 8.19859 9.25886 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.003909 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.084826 B = 7161.828522 C = 8380.640998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.065 4.065 4 C -0.121 4.121 5 C -0.151 4.151 6 C -0.135 4.135 7 C 0.532 3.468 8 O -0.565 6.565 9 N -0.615 5.615 10 C 0.086 3.914 11 C 0.157 3.843 12 H 0.110 0.890 13 N -0.728 5.728 14 C -0.251 4.251 15 H 0.092 0.908 16 C -0.068 4.068 17 N -0.964 5.964 18 Si 0.973 3.027 19 H -0.272 1.272 20 H -0.305 1.305 21 H -0.276 1.276 22 C 0.108 3.892 23 H 0.146 0.854 24 N -0.263 5.263 25 C -0.035 4.035 26 C -0.065 4.065 27 N -0.309 5.309 28 N -0.106 5.106 29 C 0.113 3.887 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.378 0.622 46 H 0.249 0.751 47 H 0.195 0.805 48 H 0.213 0.787 49 H 0.086 0.914 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.898 -4.920 -15.963 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.084 4.084 4 C -0.158 4.158 5 C -0.208 4.208 6 C -0.175 4.175 7 C 0.323 3.677 8 O -0.444 6.444 9 N -0.350 5.350 10 C -0.040 4.040 11 C 0.045 3.955 12 H 0.128 0.872 13 N -0.368 5.368 14 C -0.382 4.382 15 H 0.110 0.890 16 C -0.261 4.261 17 N -0.613 5.613 18 Si 0.802 3.198 19 H -0.198 1.198 20 H -0.232 1.232 21 H -0.202 1.202 22 C 0.004 3.996 23 H 0.163 0.837 24 N -0.056 5.056 25 C -0.187 4.187 26 C -0.222 4.222 27 N -0.174 5.174 28 N -0.085 5.085 29 C -0.011 4.011 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.212 0.788 46 H 0.057 0.943 47 H 0.212 0.788 48 H 0.230 0.770 49 H 0.105 0.895 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.027 -4.943 -14.586 20.172 hybrid contribution -0.865 0.452 -0.560 1.126 sum 12.162 -4.491 -15.146 19.937 Atomic orbital electron populations 1.21896 0.95798 1.01590 1.01907 1.21612 0.95879 0.96376 1.02146 1.20902 1.00033 0.94878 0.92576 1.21628 1.01122 0.99444 0.93627 1.21774 1.00835 1.00998 0.97182 1.21877 1.02367 1.01623 0.91600 1.20794 0.80801 0.82723 0.83403 1.90666 1.38147 1.29841 1.85743 1.48627 1.46775 1.34156 1.05460 1.23019 0.93142 0.89333 0.98530 1.21890 0.88949 0.93145 0.91540 0.87195 1.42595 1.10934 1.05537 1.77708 1.19634 0.96789 0.85074 1.36689 0.89012 1.25632 0.97299 1.01044 1.02150 1.69888 1.07242 1.32588 1.51551 0.85238 0.76392 0.80017 0.78185 1.19783 1.23203 1.20179 1.23649 0.83743 0.88572 1.03604 0.83670 1.47360 1.22575 1.28561 1.07144 1.23708 1.00315 0.98568 0.96133 1.24084 1.00272 1.05338 0.92541 1.75036 1.16817 1.10397 1.15155 1.78323 1.02300 1.14044 1.13860 1.22603 0.96141 1.01177 0.81134 0.92906 0.93420 0.91551 0.91671 0.92428 0.91666 0.91169 0.91462 0.92600 0.92142 0.92953 0.88191 0.87472 0.92634 0.89130 0.78761 0.94255 0.78850 0.77025 0.89543 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.21 71.98 0.66 -2.02 16 2 C -0.12 -2.32 5.18 30.59 0.16 -2.16 16 3 C -0.06 -1.14 1.81 -10.79 -0.02 -1.16 16 4 C -0.12 -1.71 5.15 30.59 0.16 -1.55 16 5 C -0.15 -1.95 9.52 71.98 0.69 -1.27 16 6 C -0.14 -2.48 4.18 29.85 0.12 -2.36 16 7 C 0.53 12.18 7.32 87.66 0.64 12.83 16 8 O -0.56 -15.84 14.23 -3.04 -0.04 -15.88 16 9 N -0.62 -13.65 2.18 -810.86 -1.76 -15.41 16 10 C 0.09 2.22 5.86 86.73 0.51 2.72 16 11 C 0.16 4.86 3.46 46.18 0.16 5.02 16 12 H 0.11 3.02 8.11 -2.38 -0.02 3.00 16 13 N -0.73 -32.97 5.12 -317.32 -1.63 -34.59 16 14 C -0.25 -12.58 9.97 84.03 0.84 -11.74 16 15 H 0.09 4.18 7.83 -2.91 -0.02 4.15 16 16 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 17 N -0.96 -58.81 13.06 21.65 0.28 -58.53 16 18 Si 0.97 44.02 29.55 68.60 2.03 46.05 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.31 -14.45 7.11 99.48 0.71 -13.74 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 22 C 0.11 2.91 4.08 46.55 0.19 3.10 16 23 H 0.15 3.53 8.14 -2.39 -0.02 3.51 16 24 N -0.26 -8.91 2.45 -319.81 -0.78 -9.70 16 25 C -0.04 -1.10 10.02 83.49 0.84 -0.27 16 26 C -0.06 -2.17 12.05 83.73 1.01 -1.16 16 27 N -0.31 -13.03 12.41 -58.25 -0.72 -13.75 16 28 N -0.11 -4.51 12.23 37.02 0.45 -4.05 16 29 C 0.11 2.34 5.90 87.02 0.51 2.85 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.89 6.26 -2.39 -0.01 0.87 16 32 H 0.07 1.00 6.39 -2.39 -0.02 0.99 16 33 H 0.06 1.14 6.78 -2.39 -0.02 1.13 16 34 H 0.06 1.38 5.93 -2.38 -0.01 1.36 16 35 H 0.06 1.30 7.96 -2.38 -0.02 1.28 16 36 H 0.07 0.98 6.17 -2.38 -0.01 0.96 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 0.73 6.89 -2.38 -0.02 0.71 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.10 1.84 6.18 -2.39 -0.01 1.83 16 42 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.72 8.03 -2.39 -0.02 1.71 16 44 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.38 19.62 5.95 -92.71 -0.55 19.07 16 46 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 47 H 0.19 5.13 6.79 -2.91 -0.02 5.11 16 48 H 0.21 5.35 8.06 -2.91 -0.02 5.32 16 49 H 0.09 1.90 7.77 -2.39 -0.02 1.88 16 50 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -71.55 390.31 5.15 -66.40 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: 0.39 Total: 39.89 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 6.93 Total: -0.42 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -4.16 Total: -136.03 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.04 Total: -15.88 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.55 5.15 -66.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130059269.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.985 kcal (2) G-P(sol) polarization free energy of solvation -71.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds