Wall clock time and date at job start Tue Mar 31 2020 20:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 C 1.53006 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47118 * 305.00597 * 4 3 2 6 6 C 1.53004 * 109.46989 * 64.99869 * 4 3 2 7 7 C 1.52993 * 109.47370 * 185.46575 * 6 4 3 8 8 C 1.50695 * 109.47468 * 185.00071 * 4 3 2 9 9 O 1.21282 * 120.00045 * 275.03648 * 8 4 3 10 10 N 1.34775 * 120.00074 * 95.03614 * 8 4 3 11 11 C 1.47426 * 125.64525 * 354.94929 * 10 8 4 12 12 C 1.54917 * 104.82895 * 204.16336 * 11 10 8 13 13 H 1.08998 * 111.00152 * 81.06788 * 12 11 10 14 14 N 1.46496 * 111.00237 * 204.91977 * 12 11 10 15 15 C 1.36942 * 119.99736 * 267.19645 * 14 12 11 16 16 H 1.07997 * 120.00281 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00099 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99661 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00397 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47005 * 59.99704 * 19 17 15 21 21 H 1.48496 * 109.47611 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47147 * 300.00076 * 19 17 15 23 23 C 1.55160 * 101.58074 * 322.99302 * 12 11 10 24 24 H 1.09007 * 110.86871 * 153.93511 * 23 12 11 25 25 N 1.46496 * 110.72049 * 277.13336 * 23 12 11 26 26 C 1.35323 * 125.86564 * 80.27452 * 25 23 12 27 27 C 1.35345 * 106.17396 * 180.18747 * 26 25 23 28 28 N 1.33772 * 106.49659 * 359.58983 * 27 26 25 29 29 N 1.28625 * 108.88792 * 0.26272 * 28 27 26 30 30 C 1.47024 * 125.64876 * 174.99260 * 10 8 4 31 31 H 1.09006 * 109.47217 * 300.00161 * 1 2 3 32 32 H 1.09002 * 109.46986 * 59.99719 * 1 2 3 33 33 H 1.09001 * 109.47705 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47217 * 239.99839 * 2 1 3 35 35 H 1.09002 * 109.46986 * 120.00280 * 2 1 3 36 36 H 1.08999 * 109.47100 * 60.00181 * 3 2 1 37 37 H 1.08998 * 109.47258 * 299.99563 * 3 2 1 38 38 H 1.09004 * 109.47134 * 305.46858 * 6 4 3 39 39 H 1.09002 * 109.46941 * 65.46323 * 6 4 3 40 40 H 1.09000 * 109.46917 * 54.95583 * 7 6 4 41 41 H 1.08993 * 109.47510 * 174.95882 * 7 6 4 42 42 H 1.09004 * 109.47002 * 294.96052 * 7 6 4 43 43 H 1.08998 * 110.36795 * 323.00186 * 11 10 8 44 44 H 1.08999 * 110.36601 * 85.22009 * 11 10 8 45 45 H 0.96996 * 120.00453 * 87.19597 * 14 12 11 46 46 H 0.97001 * 120.00301 * 179.97438 * 18 17 15 47 47 H 1.08005 * 126.90609 * 0.04091 * 26 25 23 48 48 H 1.08002 * 126.74956 * 179.85811 * 27 26 25 49 49 H 1.09002 * 109.87844 * 59.48945 * 30 10 8 50 50 H 1.08999 * 110.00819 * 298.39436 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0806 0.8326 -1.3064 7 6 5.6043 0.7071 -1.2498 8 6 4.0724 2.8578 0.1245 9 8 4.1880 3.5490 -0.8653 10 7 4.3931 3.3555 1.3352 11 6 4.2032 2.6671 2.6249 12 6 4.1184 3.8048 3.6729 13 1 3.1191 4.2396 3.6975 14 7 4.5135 3.3267 5.0001 15 6 3.5645 2.8617 5.8709 16 1 2.5248 2.8470 5.5792 17 6 3.9388 2.4091 7.1287 18 7 5.2059 2.4275 7.4844 19 14 2.6443 1.7754 8.3169 20 1 1.9431 0.6146 7.7119 21 1 3.2973 1.3552 9.5826 22 1 1.6630 2.8533 8.6008 23 6 5.1526 4.8187 3.1163 24 1 4.9130 5.8329 3.4362 25 7 6.5100 4.4541 3.5294 26 6 7.2873 3.5086 2.9524 27 6 8.4486 3.4997 3.6473 28 7 8.3302 4.4341 4.5971 29 7 7.1701 4.9813 4.5005 30 6 4.9896 4.6752 1.5885 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.6395 -0.1548 -1.4433 39 1 3.7996 1.4748 -2.1411 40 1 5.8894 0.1394 -0.3641 41 1 5.9599 0.1915 -2.1418 42 1 6.0492 1.7011 -1.2029 43 1 3.2780 2.0909 2.6148 44 1 5.0520 2.0168 2.8365 45 1 5.4474 3.3395 5.2620 46 1 5.4675 2.1116 8.3635 47 1 7.0312 2.8848 2.1086 48 1 9.3045 2.8660 3.4673 49 1 4.3318 5.4580 1.2107 50 1 5.9635 4.7436 1.1038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130065703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:31 Heat of formation + Delta-G solvation = 70.350048 kcal Electronic energy + Delta-G solvation = -30826.785186 eV Core-core repulsion = 26891.507904 eV Total energy + Delta-G solvation = -3935.277281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.52 seconds Orbital eigenvalues (eV) -42.89196 -40.35580 -38.17902 -36.25883 -34.33955 -33.57070 -33.16063 -31.32506 -30.61668 -29.99922 -28.88374 -27.78252 -25.21895 -24.10526 -23.67054 -22.57683 -22.24102 -21.63827 -20.91956 -20.10838 -18.90806 -17.81754 -17.48859 -17.18191 -15.78596 -15.64234 -15.43651 -15.30451 -14.74499 -14.69970 -14.39617 -14.18179 -13.77708 -13.74393 -13.40293 -13.35324 -13.25802 -13.04472 -12.76415 -12.61850 -12.30237 -12.15696 -11.85834 -11.71931 -11.47204 -11.27764 -11.25612 -11.19777 -11.02940 -10.95196 -10.92940 -10.84800 -10.56328 -10.48113 -10.29259 -9.99164 -9.74974 -9.61207 -9.16392 -8.92040 -8.66513 -7.29291 -5.94772 -3.31180 2.03933 2.58080 2.64911 2.92063 3.07237 3.32245 3.37121 3.39520 4.10183 4.41134 4.43551 4.55325 4.62522 4.71878 4.85009 4.91749 4.93723 5.01503 5.08242 5.16866 5.22553 5.29054 5.34315 5.39140 5.45215 5.48850 5.52248 5.55788 5.59804 5.63300 5.66885 5.69213 5.73982 5.82009 5.86637 5.94135 5.98923 6.03448 6.06235 6.11564 6.15624 6.19191 6.22915 6.33399 6.55240 7.00073 7.46499 7.49257 8.13667 8.18054 8.99865 9.30663 9.77815 10.12160 11.24883 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008597 B = 0.004722 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.290814 B = 5928.101321 C = 8233.986918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.104 4.104 5 H 0.092 0.908 6 C -0.109 4.109 7 C -0.155 4.155 8 C 0.538 3.462 9 O -0.546 6.546 10 N -0.617 5.617 11 C 0.065 3.935 12 C 0.168 3.832 13 H 0.093 0.907 14 N -0.704 5.704 15 C -0.268 4.268 16 H 0.075 0.925 17 C 0.002 3.998 18 N -0.916 5.916 19 Si 0.911 3.089 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.112 3.888 24 H 0.132 0.868 25 N -0.269 5.269 26 C -0.049 4.049 27 C -0.055 4.055 28 N -0.272 5.272 29 N -0.066 5.066 30 C 0.106 3.894 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.392 0.608 46 H 0.261 0.739 47 H 0.177 0.823 48 H 0.183 0.817 49 H 0.092 0.908 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 -3.161 -17.250 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.125 4.125 5 H 0.110 0.890 6 C -0.147 4.147 7 C -0.212 4.212 8 C 0.328 3.672 9 O -0.423 6.423 10 N -0.352 5.352 11 C -0.061 4.061 12 C 0.053 3.947 13 H 0.110 0.890 14 N -0.344 5.344 15 C -0.398 4.398 16 H 0.093 0.907 17 C -0.196 4.196 18 N -0.560 5.560 19 Si 0.741 3.259 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.209 1.209 23 C 0.008 3.992 24 H 0.150 0.850 25 N -0.063 5.063 26 C -0.200 4.200 27 C -0.212 4.212 28 N -0.138 5.138 29 N -0.045 5.045 30 C -0.019 4.019 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.229 0.771 46 H 0.071 0.929 47 H 0.194 0.806 48 H 0.200 0.800 49 H 0.110 0.890 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.452 -1.827 -16.529 16.984 hybrid contribution -0.402 -1.340 -0.004 1.399 sum -3.854 -3.166 -16.534 17.270 Atomic orbital electron populations 1.21767 0.95715 1.01623 1.01921 1.21577 0.95980 0.96173 1.02409 1.21527 0.92208 0.97856 1.02974 1.21412 0.97321 0.92942 1.00819 0.88977 1.21485 0.96062 1.00880 0.96238 1.21809 0.95826 1.01938 1.01674 1.20357 0.76706 0.89037 0.81148 1.90672 1.54253 1.60947 1.36449 1.48591 1.62284 1.17383 1.06917 1.23700 1.02330 0.98331 0.81756 1.21660 0.95672 0.90485 0.86914 0.88957 1.42327 1.08745 1.74280 1.09032 1.19121 0.89304 1.36753 0.94630 0.90737 1.24844 0.96211 1.00881 0.97694 1.69685 1.14571 1.50662 1.21095 0.86244 0.80471 0.78723 0.80509 1.21020 1.21483 1.20935 1.23208 0.78344 1.03367 0.94309 0.85044 1.47224 1.13140 1.24793 1.21122 1.23387 0.93175 0.99053 1.04393 1.23449 0.99530 1.02085 0.96127 1.75096 1.09775 1.09164 1.19744 1.78378 1.00164 1.20118 1.05849 1.22131 0.99939 0.87113 0.92692 0.92531 0.92845 0.92735 0.91626 0.91584 0.91314 0.91211 0.90916 0.90747 0.92701 0.92551 0.92653 0.89994 0.90985 0.77121 0.92933 0.80585 0.80016 0.88959 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.15 0.37 -0.86 16 2 C -0.12 -1.04 5.69 -26.74 -0.15 -1.20 16 3 C -0.11 -1.05 4.67 -26.73 -0.12 -1.18 16 4 C -0.10 -1.10 1.63 -91.77 -0.15 -1.25 16 5 H 0.09 0.97 7.13 -51.93 -0.37 0.60 16 6 C -0.11 -1.06 5.04 -26.73 -0.13 -1.19 16 7 C -0.16 -1.51 9.65 37.15 0.36 -1.15 16 8 C 0.54 7.06 5.98 -10.99 -0.07 7.00 16 9 O -0.55 -8.69 16.32 5.56 0.09 -8.60 16 10 N -0.62 -7.87 3.33 -170.52 -0.57 -8.43 16 11 C 0.06 0.93 5.35 -2.52 -0.01 0.91 16 12 C 0.17 2.81 3.58 -65.78 -0.24 2.57 16 13 H 0.09 1.48 8.09 -51.93 -0.42 1.06 16 14 N -0.70 -16.04 5.21 -51.35 -0.27 -16.30 16 15 C -0.27 -6.81 9.96 -15.06 -0.15 -6.96 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 18 N -0.92 -26.90 13.06 55.49 0.72 -26.17 16 19 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.11 1.63 3.97 -66.10 -0.26 1.37 16 24 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 25 N -0.27 -4.54 2.24 -52.98 -0.12 -4.66 16 26 C -0.05 -0.76 9.23 -17.04 -0.16 -0.91 16 27 C -0.05 -0.89 12.05 -17.74 -0.21 -1.11 16 28 N -0.27 -5.48 12.41 30.23 0.38 -5.10 16 29 N -0.07 -1.33 12.58 60.35 0.76 -0.57 16 30 C 0.11 1.30 5.94 -3.07 -0.02 1.29 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.50 6.45 -51.93 -0.34 0.16 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.72 7.98 -51.93 -0.41 0.30 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.59 6.33 -51.93 -0.33 0.26 16 39 H 0.07 0.81 7.66 -51.93 -0.40 0.41 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.63 7.42 -51.93 -0.39 0.24 16 43 H 0.08 1.13 7.51 -51.93 -0.39 0.74 16 44 H 0.07 1.13 7.19 -51.93 -0.37 0.75 16 45 H 0.39 9.96 6.22 -40.82 -0.25 9.71 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 47 H 0.18 2.25 7.60 -52.48 -0.40 1.85 16 48 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 49 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.08 0.96 7.41 -51.93 -0.38 0.57 16 LS Contribution 398.63 15.07 6.01 6.01 Total: -1.00 -32.10 398.63 -7.29 -39.39 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -8.23 Total: 10.95 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.05 Total: -2.71 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.91 Total: -61.25 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.10 -7.29 -39.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130065703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.741 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds