Wall clock time and date at job start Tue Mar 31 2020 20:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 C 1.53006 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47118 * 305.00597 * 4 3 2 6 6 C 1.53004 * 109.46989 * 64.99869 * 4 3 2 7 7 C 1.52993 * 109.47370 * 185.46575 * 6 4 3 8 8 C 1.50695 * 109.47468 * 185.00071 * 4 3 2 9 9 O 1.21282 * 120.00045 * 275.03648 * 8 4 3 10 10 N 1.34775 * 120.00074 * 95.03614 * 8 4 3 11 11 C 1.47426 * 125.64525 * 354.94929 * 10 8 4 12 12 C 1.54917 * 104.82895 * 204.16336 * 11 10 8 13 13 H 1.08998 * 111.00152 * 81.06788 * 12 11 10 14 14 N 1.46496 * 111.00237 * 204.91977 * 12 11 10 15 15 C 1.36942 * 119.99736 * 267.19645 * 14 12 11 16 16 H 1.07997 * 120.00281 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00099 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99661 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00397 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47005 * 59.99704 * 19 17 15 21 21 H 1.48496 * 109.47611 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47147 * 300.00076 * 19 17 15 23 23 C 1.55160 * 101.58074 * 322.99302 * 12 11 10 24 24 H 1.09007 * 110.86871 * 153.93511 * 23 12 11 25 25 N 1.46496 * 110.72049 * 277.13336 * 23 12 11 26 26 C 1.35323 * 125.86564 * 80.27452 * 25 23 12 27 27 C 1.35345 * 106.17396 * 180.18747 * 26 25 23 28 28 N 1.33772 * 106.49659 * 359.58983 * 27 26 25 29 29 N 1.28625 * 108.88792 * 0.26272 * 28 27 26 30 30 C 1.47024 * 125.64876 * 174.99260 * 10 8 4 31 31 H 1.09006 * 109.47217 * 300.00161 * 1 2 3 32 32 H 1.09002 * 109.46986 * 59.99719 * 1 2 3 33 33 H 1.09001 * 109.47705 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47217 * 239.99839 * 2 1 3 35 35 H 1.09002 * 109.46986 * 120.00280 * 2 1 3 36 36 H 1.08999 * 109.47100 * 60.00181 * 3 2 1 37 37 H 1.08998 * 109.47258 * 299.99563 * 3 2 1 38 38 H 1.09004 * 109.47134 * 305.46858 * 6 4 3 39 39 H 1.09002 * 109.46941 * 65.46323 * 6 4 3 40 40 H 1.09000 * 109.46917 * 54.95583 * 7 6 4 41 41 H 1.08993 * 109.47510 * 174.95882 * 7 6 4 42 42 H 1.09004 * 109.47002 * 294.96052 * 7 6 4 43 43 H 1.08998 * 110.36795 * 323.00186 * 11 10 8 44 44 H 1.08999 * 110.36601 * 85.22009 * 11 10 8 45 45 H 0.96996 * 120.00453 * 87.19597 * 14 12 11 46 46 H 0.97001 * 120.00301 * 179.97438 * 18 17 15 47 47 H 1.08005 * 126.90609 * 0.04091 * 26 25 23 48 48 H 1.08002 * 126.74956 * 179.85811 * 27 26 25 49 49 H 1.09002 * 109.87844 * 59.48945 * 30 10 8 50 50 H 1.08999 * 110.00819 * 298.39436 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0806 0.8326 -1.3064 7 6 5.6043 0.7071 -1.2498 8 6 4.0724 2.8578 0.1245 9 8 4.1880 3.5490 -0.8653 10 7 4.3931 3.3555 1.3352 11 6 4.2032 2.6671 2.6249 12 6 4.1184 3.8048 3.6729 13 1 3.1191 4.2396 3.6975 14 7 4.5135 3.3267 5.0001 15 6 3.5645 2.8617 5.8709 16 1 2.5248 2.8470 5.5792 17 6 3.9388 2.4091 7.1287 18 7 5.2059 2.4275 7.4844 19 14 2.6443 1.7754 8.3169 20 1 1.9431 0.6146 7.7119 21 1 3.2973 1.3552 9.5826 22 1 1.6630 2.8533 8.6008 23 6 5.1526 4.8187 3.1163 24 1 4.9130 5.8329 3.4362 25 7 6.5100 4.4541 3.5294 26 6 7.2873 3.5086 2.9524 27 6 8.4486 3.4997 3.6473 28 7 8.3302 4.4341 4.5971 29 7 7.1701 4.9813 4.5005 30 6 4.9896 4.6752 1.5885 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.6395 -0.1548 -1.4433 39 1 3.7996 1.4748 -2.1411 40 1 5.8894 0.1394 -0.3641 41 1 5.9599 0.1915 -2.1418 42 1 6.0492 1.7011 -1.2029 43 1 3.2780 2.0909 2.6148 44 1 5.0520 2.0168 2.8365 45 1 5.4474 3.3395 5.2620 46 1 5.4675 2.1116 8.3635 47 1 7.0312 2.8848 2.1086 48 1 9.3045 2.8660 3.4673 49 1 4.3318 5.4580 1.2107 50 1 5.9635 4.7436 1.1038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130065703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:27 Heat of formation + Delta-G solvation = 50.242800 kcal Electronic energy + Delta-G solvation = -30827.657102 eV Core-core repulsion = 26891.507904 eV Total energy + Delta-G solvation = -3936.149197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -44.22895 -41.44957 -39.36618 -37.14818 -35.98724 -34.90832 -33.89145 -33.06731 -31.92880 -31.13509 -29.84376 -29.18706 -26.31746 -25.62802 -24.77911 -23.62034 -23.51285 -22.82992 -21.82421 -21.35498 -19.96132 -19.49017 -18.72621 -18.38610 -17.18105 -16.81456 -16.59793 -16.33520 -16.05657 -15.93083 -15.54086 -15.31216 -15.12123 -14.90205 -14.74081 -14.50469 -14.17401 -14.07109 -13.84692 -13.67781 -13.51494 -13.04168 -12.95221 -12.88966 -12.73615 -12.59581 -12.54567 -12.48179 -12.23138 -12.15475 -12.00205 -11.89822 -11.81150 -11.69594 -11.65586 -11.29163 -11.19526 -10.89467 -10.71883 -10.25036 -9.80863 -9.16165 -7.97096 -5.31617 0.72407 1.39166 1.48356 1.50537 1.56376 1.56772 1.72379 1.83090 2.52048 2.97439 3.22978 3.47801 3.53847 3.64602 3.71206 3.76609 3.92712 3.98963 4.10258 4.17582 4.21276 4.23466 4.27982 4.31750 4.35815 4.48806 4.51149 4.54266 4.59393 4.72387 4.75908 4.83270 4.87571 4.89380 4.96811 4.98525 5.06261 5.07773 5.17034 5.28488 5.30970 5.31802 5.35933 5.43905 5.48927 5.50723 5.72121 6.18610 6.37691 7.08219 7.27917 7.62420 7.94864 8.17168 9.23983 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008597 B = 0.004722 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.290814 B = 5928.101321 C = 8233.986918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.101 4.101 5 H 0.097 0.903 6 C -0.106 4.106 7 C -0.154 4.154 8 C 0.540 3.460 9 O -0.572 6.572 10 N -0.611 5.611 11 C 0.085 3.915 12 C 0.159 3.841 13 H 0.104 0.896 14 N -0.722 5.722 15 C -0.252 4.252 16 H 0.090 0.910 17 C -0.065 4.065 18 N -0.963 5.963 19 Si 0.972 3.028 20 H -0.272 1.272 21 H -0.304 1.304 22 H -0.277 1.277 23 C 0.114 3.886 24 H 0.141 0.859 25 N -0.265 5.265 26 C -0.039 4.039 27 C -0.061 4.061 28 N -0.309 5.309 29 N -0.109 5.109 30 C 0.114 3.886 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.035 0.965 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.378 0.622 46 H 0.250 0.750 47 H 0.204 0.796 48 H 0.215 0.785 49 H 0.111 0.889 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 -4.292 -19.383 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.122 4.122 5 H 0.115 0.885 6 C -0.143 4.143 7 C -0.211 4.211 8 C 0.331 3.669 9 O -0.451 6.451 10 N -0.346 5.346 11 C -0.041 4.041 12 C 0.046 3.954 13 H 0.122 0.878 14 N -0.361 5.361 15 C -0.383 4.383 16 H 0.108 0.892 17 C -0.258 4.258 18 N -0.611 5.611 19 Si 0.801 3.199 20 H -0.197 1.197 21 H -0.230 1.230 22 H -0.203 1.203 23 C 0.010 3.990 24 H 0.158 0.842 25 N -0.059 5.059 26 C -0.191 4.191 27 C -0.219 4.219 28 N -0.174 5.174 29 N -0.088 5.088 30 C -0.010 4.010 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.110 0.890 44 H 0.081 0.919 45 H 0.212 0.788 46 H 0.058 0.942 47 H 0.221 0.779 48 H 0.232 0.768 49 H 0.129 0.871 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.955 -2.928 -18.716 19.581 hybrid contribution 0.027 -0.953 0.492 1.073 sum -4.927 -3.882 -18.224 19.274 Atomic orbital electron populations 1.21773 0.95453 1.02100 1.01769 1.21559 0.96186 0.95149 1.02894 1.21500 0.91441 0.98780 1.02442 1.21472 0.97876 0.91244 1.01594 0.88475 1.21488 0.96144 1.01594 0.95115 1.21800 0.95725 1.00992 1.02601 1.20788 0.75896 0.89743 0.80465 1.90669 1.55392 1.61878 1.37149 1.48527 1.62243 1.17351 1.06438 1.23246 1.02471 0.96933 0.81477 1.21921 0.96768 0.91600 0.85085 0.87823 1.42446 1.07631 1.74956 1.11086 1.19598 0.90359 1.33762 0.94549 0.89236 1.25606 0.97705 1.02730 0.99804 1.69869 1.16706 1.53603 1.20952 0.85250 0.78186 0.78519 0.77966 1.19719 1.23035 1.20335 1.23303 0.76935 1.03161 0.95586 0.84155 1.47385 1.13578 1.24632 1.20354 1.23826 0.92521 0.98307 1.04405 1.24101 1.01033 1.01595 0.95154 1.75030 1.10276 1.10721 1.21405 1.78312 1.00928 1.21850 1.07665 1.22135 1.00683 0.87492 0.90735 0.93213 0.92508 0.91972 0.90487 0.91714 0.92005 0.91603 0.88821 0.91963 0.92126 0.91351 0.94591 0.89021 0.91935 0.78814 0.94151 0.77926 0.76815 0.87102 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.12 -1.70 5.69 30.59 0.17 -1.53 16 3 C -0.10 -1.78 4.67 30.60 0.14 -1.64 16 4 C -0.10 -1.89 1.63 -11.54 -0.02 -1.91 16 5 H 0.10 1.75 7.13 -2.39 -0.02 1.74 16 6 C -0.11 -1.79 5.04 30.59 0.15 -1.63 16 7 C -0.15 -2.64 9.65 71.98 0.69 -1.94 16 8 C 0.54 12.94 5.98 87.66 0.52 13.46 16 9 O -0.57 -17.09 16.32 -3.04 -0.05 -17.13 16 10 N -0.61 -14.09 3.33 -811.79 -2.70 -16.79 16 11 C 0.08 2.23 5.35 86.86 0.47 2.70 16 12 C 0.16 5.06 3.58 46.39 0.17 5.23 16 13 H 0.10 3.09 8.09 -2.39 -0.02 3.07 16 14 N -0.72 -32.57 5.21 -316.36 -1.65 -34.22 16 15 C -0.25 -12.62 9.96 84.03 0.84 -11.78 16 16 H 0.09 4.12 7.83 -2.91 -0.02 4.10 16 17 C -0.07 -3.54 5.50 84.86 0.47 -3.08 16 18 N -0.96 -58.11 13.06 21.65 0.28 -57.83 16 19 Si 0.97 43.88 29.55 68.60 2.03 45.91 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 23 C 0.11 3.15 3.97 46.18 0.18 3.33 16 24 H 0.14 3.62 8.14 -2.38 -0.02 3.61 16 25 N -0.27 -8.81 2.24 -321.54 -0.72 -9.53 16 26 C -0.04 -1.15 9.23 83.49 0.77 -0.38 16 27 C -0.06 -1.95 12.05 83.73 1.01 -0.94 16 28 N -0.31 -12.66 12.41 -58.26 -0.72 -13.38 16 29 N -0.11 -4.49 12.58 37.02 0.47 -4.03 16 30 C 0.11 2.54 5.94 86.73 0.52 3.05 16 31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.92 6.45 -2.38 -0.02 0.90 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.14 7.98 -2.39 -0.02 1.13 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.20 6.33 -2.39 -0.02 1.18 16 39 H 0.06 1.23 7.66 -2.39 -0.02 1.21 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 42 H 0.03 0.75 7.42 -2.39 -0.02 0.73 16 43 H 0.09 2.28 7.51 -2.39 -0.02 2.26 16 44 H 0.06 1.82 7.19 -2.39 -0.02 1.81 16 45 H 0.38 19.39 6.22 -92.71 -0.58 18.82 16 46 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 47 H 0.20 4.68 7.60 -2.91 -0.02 4.66 16 48 H 0.22 5.02 8.06 -2.91 -0.02 5.00 16 49 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.08 1.83 7.41 -2.39 -0.02 1.81 16 Total: -1.00 -70.83 398.63 4.09 -66.74 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: 0.36 Total: 38.72 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 6.80 Total: 1.54 kcal Atomic # 7 Polarization: -130.73 SS G_CDS: -5.04 Total: -135.78 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.05 Total: -17.13 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -70.83 4.09 -66.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130065703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.978 kcal (2) G-P(sol) polarization free energy of solvation -70.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds