Wall clock time and date at job start Tue Mar 31 2020 20:51:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.52997 * 109.47316 * 2 1
4 4 C 1.53006 * 109.47288 * 179.97438 * 3 2 1
5 5 H 1.09003 * 109.47118 * 305.00597 * 4 3 2
6 6 C 1.53004 * 109.46989 * 64.99869 * 4 3 2
7 7 C 1.52993 * 109.47370 * 185.46575 * 6 4 3
8 8 C 1.50695 * 109.47468 * 185.00071 * 4 3 2
9 9 O 1.21282 * 120.00045 * 275.03648 * 8 4 3
10 10 N 1.34775 * 120.00074 * 95.03614 * 8 4 3
11 11 C 1.47426 * 125.64525 * 354.94929 * 10 8 4
12 12 C 1.54917 * 104.82895 * 204.16336 * 11 10 8
13 13 H 1.08998 * 111.00152 * 81.06788 * 12 11 10
14 14 N 1.46496 * 111.00237 * 204.91977 * 12 11 10
15 15 C 1.36942 * 119.99736 * 267.19645 * 14 12 11
16 16 H 1.07997 * 120.00281 * 0.02562 * 15 14 12
17 17 C 1.38815 * 120.00099 * 180.02562 * 15 14 12
18 18 N 1.31619 * 119.99661 * 0.02562 * 17 15 14
19 19 Si 1.86793 * 120.00397 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.47005 * 59.99704 * 19 17 15
21 21 H 1.48496 * 109.47611 * 180.02562 * 19 17 15
22 22 H 1.48497 * 109.47147 * 300.00076 * 19 17 15
23 23 C 1.55160 * 101.58074 * 322.99302 * 12 11 10
24 24 H 1.09007 * 110.86871 * 153.93511 * 23 12 11
25 25 N 1.46496 * 110.72049 * 277.13336 * 23 12 11
26 26 C 1.35323 * 125.86564 * 80.27452 * 25 23 12
27 27 C 1.35345 * 106.17396 * 180.18747 * 26 25 23
28 28 N 1.33772 * 106.49659 * 359.58983 * 27 26 25
29 29 N 1.28625 * 108.88792 * 0.26272 * 28 27 26
30 30 C 1.47024 * 125.64876 * 174.99260 * 10 8 4
31 31 H 1.09006 * 109.47217 * 300.00161 * 1 2 3
32 32 H 1.09002 * 109.46986 * 59.99719 * 1 2 3
33 33 H 1.09001 * 109.47705 * 179.97438 * 1 2 3
34 34 H 1.09006 * 109.47217 * 239.99839 * 2 1 3
35 35 H 1.09002 * 109.46986 * 120.00280 * 2 1 3
36 36 H 1.08999 * 109.47100 * 60.00181 * 3 2 1
37 37 H 1.08998 * 109.47258 * 299.99563 * 3 2 1
38 38 H 1.09004 * 109.47134 * 305.46858 * 6 4 3
39 39 H 1.09002 * 109.46941 * 65.46323 * 6 4 3
40 40 H 1.09000 * 109.46917 * 54.95583 * 7 6 4
41 41 H 1.08993 * 109.47510 * 174.95882 * 7 6 4
42 42 H 1.09004 * 109.47002 * 294.96052 * 7 6 4
43 43 H 1.08998 * 110.36795 * 323.00186 * 11 10 8
44 44 H 1.08999 * 110.36601 * 85.22009 * 11 10 8
45 45 H 0.96996 * 120.00453 * 87.19597 * 14 12 11
46 46 H 0.97001 * 120.00301 * 179.97438 * 18 17 15
47 47 H 1.08005 * 126.90609 * 0.04091 * 26 25 23
48 48 H 1.08002 * 126.74956 * 179.85811 * 27 26 25
49 49 H 1.09002 * 109.87844 * 59.48945 * 30 10 8
50 50 H 1.08999 * 110.00819 * 298.39436 * 30 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4424 0.0006
5 1 3.9330 0.8530 0.8427
6 6 4.0806 0.8326 -1.3064
7 6 5.6043 0.7071 -1.2498
8 6 4.0724 2.8578 0.1245
9 8 4.1880 3.5490 -0.8653
10 7 4.3931 3.3555 1.3352
11 6 4.2032 2.6671 2.6249
12 6 4.1184 3.8048 3.6729
13 1 3.1191 4.2396 3.6975
14 7 4.5135 3.3267 5.0001
15 6 3.5645 2.8617 5.8709
16 1 2.5248 2.8470 5.5792
17 6 3.9388 2.4091 7.1287
18 7 5.2059 2.4275 7.4844
19 14 2.6443 1.7754 8.3169
20 1 1.9431 0.6146 7.7119
21 1 3.2973 1.3552 9.5826
22 1 1.6630 2.8533 8.6008
23 6 5.1526 4.8187 3.1163
24 1 4.9130 5.8329 3.4362
25 7 6.5100 4.4541 3.5294
26 6 7.2873 3.5086 2.9524
27 6 8.4486 3.4997 3.6473
28 7 8.3302 4.4341 4.5971
29 7 7.1701 4.9813 4.5005
30 6 4.9896 4.6752 1.5885
31 1 -0.3634 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 -0.3634 -1.0276 -0.0005
34 1 1.8933 -0.5139 -0.8900
35 1 1.8932 -0.5139 0.8900
36 1 1.6767 1.9563 0.8900
37 1 1.6767 1.9563 -0.8900
38 1 3.6395 -0.1548 -1.4433
39 1 3.7996 1.4748 -2.1411
40 1 5.8894 0.1394 -0.3641
41 1 5.9599 0.1915 -2.1418
42 1 6.0492 1.7011 -1.2029
43 1 3.2780 2.0909 2.6148
44 1 5.0520 2.0168 2.8365
45 1 5.4474 3.3395 5.2620
46 1 5.4675 2.1116 8.3635
47 1 7.0312 2.8848 2.1086
48 1 9.3045 2.8660 3.4673
49 1 4.3318 5.4580 1.2107
50 1 5.9635 4.7436 1.1038
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001130065703.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:51:27
Heat of formation + Delta-G solvation = 50.242800 kcal
Electronic energy + Delta-G solvation = -30827.657102 eV
Core-core repulsion = 26891.507904 eV
Total energy + Delta-G solvation = -3936.149197 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 2.30 seconds
Orbital eigenvalues (eV)
-44.22895 -41.44957 -39.36618 -37.14818 -35.98724 -34.90832 -33.89145 -33.06731
-31.92880 -31.13509 -29.84376 -29.18706 -26.31746 -25.62802 -24.77911 -23.62034
-23.51285 -22.82992 -21.82421 -21.35498 -19.96132 -19.49017 -18.72621 -18.38610
-17.18105 -16.81456 -16.59793 -16.33520 -16.05657 -15.93083 -15.54086 -15.31216
-15.12123 -14.90205 -14.74081 -14.50469 -14.17401 -14.07109 -13.84692 -13.67781
-13.51494 -13.04168 -12.95221 -12.88966 -12.73615 -12.59581 -12.54567 -12.48179
-12.23138 -12.15475 -12.00205 -11.89822 -11.81150 -11.69594 -11.65586 -11.29163
-11.19526 -10.89467 -10.71883 -10.25036 -9.80863 -9.16165 -7.97096 -5.31617
0.72407 1.39166 1.48356 1.50537 1.56376 1.56772 1.72379 1.83090
2.52048 2.97439 3.22978 3.47801 3.53847 3.64602 3.71206 3.76609
3.92712 3.98963 4.10258 4.17582 4.21276 4.23466 4.27982 4.31750
4.35815 4.48806 4.51149 4.54266 4.59393 4.72387 4.75908 4.83270
4.87571 4.89380 4.96811 4.98525 5.06261 5.07773 5.17034 5.28488
5.30970 5.31802 5.35933 5.43905 5.48927 5.50723 5.72121 6.18610
6.37691 7.08219 7.27917 7.62420 7.94864 8.17168 9.23983
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.008597 B = 0.004722 C = 0.003400
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3256.290814 B = 5928.101321 C = 8233.986918
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.120 4.120
3 C -0.104 4.104
4 C -0.101 4.101
5 H 0.097 0.903
6 C -0.106 4.106
7 C -0.154 4.154
8 C 0.540 3.460
9 O -0.572 6.572
10 N -0.611 5.611
11 C 0.085 3.915
12 C 0.159 3.841
13 H 0.104 0.896
14 N -0.722 5.722
15 C -0.252 4.252
16 H 0.090 0.910
17 C -0.065 4.065
18 N -0.963 5.963
19 Si 0.972 3.028
20 H -0.272 1.272
21 H -0.304 1.304
22 H -0.277 1.277
23 C 0.114 3.886
24 H 0.141 0.859
25 N -0.265 5.265
26 C -0.039 4.039
27 C -0.061 4.061
28 N -0.309 5.309
29 N -0.109 5.109
30 C 0.114 3.886
31 H 0.049 0.951
32 H 0.056 0.944
33 H 0.061 0.939
34 H 0.077 0.923
35 H 0.064 0.936
36 H 0.061 0.939
37 H 0.065 0.935
38 H 0.093 0.907
39 H 0.062 0.938
40 H 0.060 0.940
41 H 0.067 0.933
42 H 0.035 0.965
43 H 0.091 0.909
44 H 0.062 0.938
45 H 0.378 0.622
46 H 0.250 0.750
47 H 0.204 0.796
48 H 0.215 0.785
49 H 0.111 0.889
50 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.809 -4.292 -19.383 20.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.158 4.158
3 C -0.142 4.142
4 C -0.122 4.122
5 H 0.115 0.885
6 C -0.143 4.143
7 C -0.211 4.211
8 C 0.331 3.669
9 O -0.451 6.451
10 N -0.346 5.346
11 C -0.041 4.041
12 C 0.046 3.954
13 H 0.122 0.878
14 N -0.361 5.361
15 C -0.383 4.383
16 H 0.108 0.892
17 C -0.258 4.258
18 N -0.611 5.611
19 Si 0.801 3.199
20 H -0.197 1.197
21 H -0.230 1.230
22 H -0.203 1.203
23 C 0.010 3.990
24 H 0.158 0.842
25 N -0.059 5.059
26 C -0.191 4.191
27 C -0.219 4.219
28 N -0.174 5.174
29 N -0.088 5.088
30 C -0.010 4.010
31 H 0.068 0.932
32 H 0.075 0.925
33 H 0.080 0.920
34 H 0.095 0.905
35 H 0.083 0.917
36 H 0.080 0.920
37 H 0.084 0.916
38 H 0.112 0.888
39 H 0.080 0.920
40 H 0.079 0.921
41 H 0.086 0.914
42 H 0.054 0.946
43 H 0.110 0.890
44 H 0.081 0.919
45 H 0.212 0.788
46 H 0.058 0.942
47 H 0.221 0.779
48 H 0.232 0.768
49 H 0.129 0.871
50 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -4.955 -2.928 -18.716 19.581
hybrid contribution 0.027 -0.953 0.492 1.073
sum -4.927 -3.882 -18.224 19.274
Atomic orbital electron populations
1.21773 0.95453 1.02100 1.01769 1.21559 0.96186 0.95149 1.02894
1.21500 0.91441 0.98780 1.02442 1.21472 0.97876 0.91244 1.01594
0.88475 1.21488 0.96144 1.01594 0.95115 1.21800 0.95725 1.00992
1.02601 1.20788 0.75896 0.89743 0.80465 1.90669 1.55392 1.61878
1.37149 1.48527 1.62243 1.17351 1.06438 1.23246 1.02471 0.96933
0.81477 1.21921 0.96768 0.91600 0.85085 0.87823 1.42446 1.07631
1.74956 1.11086 1.19598 0.90359 1.33762 0.94549 0.89236 1.25606
0.97705 1.02730 0.99804 1.69869 1.16706 1.53603 1.20952 0.85250
0.78186 0.78519 0.77966 1.19719 1.23035 1.20335 1.23303 0.76935
1.03161 0.95586 0.84155 1.47385 1.13578 1.24632 1.20354 1.23826
0.92521 0.98307 1.04405 1.24101 1.01033 1.01595 0.95154 1.75030
1.10276 1.10721 1.21405 1.78312 1.00928 1.21850 1.07665 1.22135
1.00683 0.87492 0.90735 0.93213 0.92508 0.91972 0.90487 0.91714
0.92005 0.91603 0.88821 0.91963 0.92126 0.91351 0.94591 0.89021
0.91935 0.78814 0.94151 0.77926 0.76815 0.87102 0.89983
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16
2 C -0.12 -1.70 5.69 30.59 0.17 -1.53 16
3 C -0.10 -1.78 4.67 30.60 0.14 -1.64 16
4 C -0.10 -1.89 1.63 -11.54 -0.02 -1.91 16
5 H 0.10 1.75 7.13 -2.39 -0.02 1.74 16
6 C -0.11 -1.79 5.04 30.59 0.15 -1.63 16
7 C -0.15 -2.64 9.65 71.98 0.69 -1.94 16
8 C 0.54 12.94 5.98 87.66 0.52 13.46 16
9 O -0.57 -17.09 16.32 -3.04 -0.05 -17.13 16
10 N -0.61 -14.09 3.33 -811.79 -2.70 -16.79 16
11 C 0.08 2.23 5.35 86.86 0.47 2.70 16
12 C 0.16 5.06 3.58 46.39 0.17 5.23 16
13 H 0.10 3.09 8.09 -2.39 -0.02 3.07 16
14 N -0.72 -32.57 5.21 -316.36 -1.65 -34.22 16
15 C -0.25 -12.62 9.96 84.03 0.84 -11.78 16
16 H 0.09 4.12 7.83 -2.91 -0.02 4.10 16
17 C -0.07 -3.54 5.50 84.86 0.47 -3.08 16
18 N -0.96 -58.11 13.06 21.65 0.28 -57.83 16
19 Si 0.97 43.88 29.55 68.60 2.03 45.91 16
20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16
21 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16
22 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16
23 C 0.11 3.15 3.97 46.18 0.18 3.33 16
24 H 0.14 3.62 8.14 -2.38 -0.02 3.61 16
25 N -0.27 -8.81 2.24 -321.54 -0.72 -9.53 16
26 C -0.04 -1.15 9.23 83.49 0.77 -0.38 16
27 C -0.06 -1.95 12.05 83.73 1.01 -0.94 16
28 N -0.31 -12.66 12.41 -58.26 -0.72 -13.38 16
29 N -0.11 -4.49 12.58 37.02 0.47 -4.03 16
30 C 0.11 2.54 5.94 86.73 0.52 3.05 16
31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16
32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
34 H 0.08 0.92 6.45 -2.38 -0.02 0.90 16
35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16
36 H 0.06 1.14 7.98 -2.39 -0.02 1.13 16
37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
38 H 0.09 1.20 6.33 -2.39 -0.02 1.18 16
39 H 0.06 1.23 7.66 -2.39 -0.02 1.21 16
40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
41 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16
42 H 0.03 0.75 7.42 -2.39 -0.02 0.73 16
43 H 0.09 2.28 7.51 -2.39 -0.02 2.26 16
44 H 0.06 1.82 7.19 -2.39 -0.02 1.81 16
45 H 0.38 19.39 6.22 -92.71 -0.58 18.82 16
46 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16
47 H 0.20 4.68 7.60 -2.91 -0.02 4.66 16
48 H 0.22 5.02 8.06 -2.91 -0.02 5.00 16
49 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16
50 H 0.08 1.83 7.41 -2.39 -0.02 1.81 16
Total: -1.00 -70.83 398.63 4.09 -66.74
By element:
Atomic # 1 Polarization: 38.37 SS G_CDS: 0.36 Total: 38.72 kcal
Atomic # 6 Polarization: -5.25 SS G_CDS: 6.80 Total: 1.54 kcal
Atomic # 7 Polarization: -130.73 SS G_CDS: -5.04 Total: -135.78 kcal
Atomic # 8 Polarization: -17.09 SS G_CDS: -0.05 Total: -17.13 kcal
Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal
Total: -70.83 4.09 -66.74 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001130065703.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.978 kcal
(2) G-P(sol) polarization free energy of solvation -70.826 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.153 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.243 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.30 seconds