Wall clock time and date at job start Tue Mar 31 2020 20:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46510 * 2 1 4 4 C 1.52999 * 109.46965 * 240.00179 * 2 1 3 5 5 C 1.50698 * 109.47245 * 119.99622 * 2 1 3 6 6 O 1.21276 * 120.00009 * 7.80283 * 5 2 1 7 7 N 1.34773 * 119.99742 * 187.80429 * 5 2 1 8 8 C 1.46925 * 120.63385 * 353.93164 * 7 5 2 9 9 C 1.53190 * 108.78111 * 233.88794 * 8 7 5 10 10 C 1.53046 * 109.31266 * 305.36674 * 9 8 7 11 11 C 1.53041 * 109.53861 * 61.36221 * 10 9 8 12 12 H 1.08998 * 109.49577 * 58.58597 * 11 10 9 13 13 N 1.46497 * 109.52633 * 178.66988 * 11 10 9 14 14 C 1.35318 * 125.86532 * 34.56919 * 13 11 10 15 15 C 1.35347 * 106.17003 * 179.91037 * 14 13 11 16 16 C 1.50700 * 126.74800 * 180.12612 * 15 14 13 17 17 N 1.46503 * 109.47196 * 95.24311 * 16 15 14 18 18 C 1.36940 * 120.00021 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99936 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.97438 * 18 17 16 21 21 N 1.31612 * 119.99738 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46755 * 90.00290 * 22 20 18 24 24 H 1.48491 * 109.47051 * 209.99920 * 22 20 18 25 25 H 1.48496 * 109.47027 * 330.00345 * 22 20 18 26 26 N 1.33770 * 106.49999 * 0.34707 * 15 14 13 27 27 N 1.28631 * 108.88501 * 359.78167 * 26 15 14 28 28 C 1.46931 * 120.62787 * 174.21827 * 7 5 2 29 29 H 1.08997 * 109.47102 * 299.99876 * 1 2 3 30 30 H 1.08995 * 109.47367 * 60.00808 * 1 2 3 31 31 H 1.09010 * 109.46655 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47011 * 190.25840 * 3 2 1 33 33 H 1.09001 * 109.46716 * 310.25469 * 3 2 1 34 34 H 1.08993 * 109.47343 * 70.25673 * 3 2 1 35 35 H 1.08996 * 109.47280 * 312.30033 * 4 2 1 36 36 H 1.09001 * 109.47482 * 72.31203 * 4 2 1 37 37 H 1.09001 * 109.46375 * 192.30674 * 4 2 1 38 38 H 1.09002 * 109.58633 * 353.67955 * 8 7 5 39 39 H 1.09000 * 109.58575 * 114.09684 * 8 7 5 40 40 H 1.08998 * 109.50116 * 185.41520 * 9 8 7 41 41 H 1.08999 * 109.52320 * 65.33048 * 9 8 7 42 42 H 1.09004 * 109.45596 * 301.34751 * 10 9 8 43 43 H 1.08995 * 109.45912 * 181.38459 * 10 9 8 44 44 H 1.08003 * 126.91424 * 0.02562 * 14 13 11 45 45 H 1.09001 * 109.47360 * 215.24379 * 16 15 14 46 46 H 1.08998 * 109.47449 * 335.24524 * 16 15 14 47 47 H 0.96994 * 120.00368 * 359.97438 * 17 16 15 48 48 H 0.96998 * 119.99756 * 179.97438 * 21 20 18 49 49 H 1.08992 * 109.58446 * 245.89994 * 28 7 5 50 50 H 1.08998 * 109.58859 * 6.18925 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 8 1.2535 -1.2930 1.9547 7 7 3.3473 -0.6979 1.5260 8 6 4.3189 -0.1118 0.5927 9 6 5.4066 -1.1493 0.2972 10 6 6.0148 -1.6345 1.6151 11 6 4.9301 -2.3004 2.4649 12 1 4.4966 -3.1345 1.9131 13 7 5.5191 -2.7930 3.7126 14 6 6.5242 -2.2043 4.4013 15 6 6.7497 -2.9874 5.4820 16 6 7.7736 -2.7582 6.5637 17 7 7.1463 -2.0633 7.6906 18 6 7.8873 -1.7465 8.7979 19 1 8.9339 -2.0093 8.8405 20 6 7.2930 -1.0876 9.8655 21 7 6.0174 -0.7678 9.8136 22 14 8.3039 -0.6549 11.3755 23 1 8.9040 0.6920 11.2001 24 1 7.4275 -0.6540 12.5742 25 1 9.3838 -1.6587 11.5525 26 7 5.8882 -4.0073 5.3985 27 7 5.1733 -3.8629 4.3390 28 6 3.8370 -1.2759 2.7850 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.1145 1.4482 -0.1830 33 1 1.5348 2.0064 -0.7843 34 1 1.8337 1.9009 0.9672 35 1 1.5091 -1.6660 -1.3656 36 1 1.8668 -0.0966 -2.1256 37 1 3.1077 -0.9148 -1.1465 38 1 3.8152 0.1637 -0.3339 39 1 4.7701 0.7726 1.0426 40 1 6.1844 -0.6961 -0.3173 41 1 4.9691 -1.9943 -0.2344 42 1 6.4306 -0.7853 2.1575 43 1 6.8059 -2.3546 1.4066 44 1 7.0411 -1.2922 4.1419 45 1 8.1664 -3.7172 6.9014 46 1 8.5882 -2.1502 6.1700 47 1 6.2062 -1.8276 7.6525 48 1 5.6020 -0.3078 10.5598 49 1 4.2488 -0.4865 3.4136 50 1 3.0149 -1.7665 3.3060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186018136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:40 Heat of formation + Delta-G solvation = 88.402924 kcal Electronic energy + Delta-G solvation = -29637.010144 eV Core-core repulsion = 25702.515694 eV Total energy + Delta-G solvation = -3934.494450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.01533 -41.18903 -38.24488 -36.41620 -35.10315 -34.27190 -32.74212 -31.81345 -30.35796 -29.86090 -27.91854 -27.65240 -26.49566 -25.84050 -24.47693 -23.03568 -22.69804 -21.91448 -20.66096 -20.43361 -19.18575 -17.57949 -17.13054 -16.81239 -16.61002 -16.20221 -15.59951 -15.09630 -14.94870 -14.75590 -14.55364 -14.46300 -14.24601 -14.00871 -13.63770 -13.34020 -13.20058 -13.10562 -12.82860 -12.76152 -12.60962 -12.47358 -12.19201 -12.07767 -11.88709 -11.83179 -11.65194 -11.44252 -11.32720 -11.18128 -10.89034 -10.85133 -10.78337 -10.40143 -10.08399 -10.00967 -9.88420 -9.70487 -9.12487 -8.85901 -8.79155 -6.88828 -5.70941 -3.00667 1.80995 2.15194 2.26439 2.72748 2.95461 3.47271 3.52449 3.54839 3.82690 3.96318 4.15362 4.18206 4.26772 4.32920 4.37773 4.59601 4.62949 4.66183 4.73230 4.79669 4.90631 4.96157 5.08826 5.11245 5.14297 5.17132 5.22167 5.31872 5.33089 5.35806 5.41569 5.47421 5.50413 5.54106 5.58361 5.64786 5.66794 5.73225 5.84924 5.90617 5.97232 6.20655 6.43726 6.68289 6.78393 6.83348 6.92229 7.73620 7.78136 8.46163 8.88362 9.57849 10.13927 10.49856 11.51787 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.002413 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.045235 B =11601.505254 C =12266.215682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.158 4.158 4 C -0.154 4.154 5 C 0.526 3.474 6 O -0.528 6.528 7 N -0.608 5.608 8 C 0.079 3.921 9 C -0.132 4.132 10 C -0.131 4.131 11 C 0.139 3.861 12 H 0.113 0.887 13 N -0.295 5.295 14 C -0.044 4.044 15 C -0.004 4.004 16 C 0.233 3.767 17 N -0.726 5.726 18 C -0.240 4.240 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 N -0.253 5.253 27 N -0.093 5.093 28 C 0.102 3.898 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.186 0.814 45 H 0.039 0.961 46 H 0.037 0.963 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.081 0.919 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 5.399 -31.121 31.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.215 4.215 4 C -0.211 4.211 5 C 0.314 3.686 6 O -0.403 6.403 7 N -0.342 5.342 8 C -0.043 4.043 9 C -0.170 4.170 10 C -0.170 4.170 11 C 0.035 3.965 12 H 0.131 0.869 13 N -0.089 5.089 14 C -0.194 4.194 15 C -0.142 4.142 16 C 0.104 3.896 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 N -0.120 5.120 27 N -0.072 5.072 28 C -0.022 4.022 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.203 0.797 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.100 0.900 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.982 3.863 -30.589 31.407 hybrid contribution 0.900 1.348 0.852 1.831 sum -5.082 5.211 -29.737 30.615 Atomic orbital electron populations 1.21688 0.91590 1.03130 1.02179 1.20785 0.98294 0.96336 0.93336 1.22305 1.02210 0.93711 1.03296 1.22151 1.01818 1.01111 0.96027 1.20717 0.81282 0.79841 0.86793 1.90739 1.54891 1.43330 1.51350 1.47938 1.06566 1.59691 1.20048 1.22572 0.90576 0.96266 0.94899 1.21947 0.98600 0.99689 0.96806 1.21945 0.97281 1.01733 0.96020 1.21841 0.94703 0.98450 0.81513 0.86923 1.47245 1.24747 1.17665 1.19238 1.23297 0.96687 1.03140 0.96296 1.22472 1.00795 0.93115 0.97815 1.18941 0.89779 0.96376 0.84516 1.42311 1.11050 1.68844 1.14856 1.19228 0.93439 1.30656 0.93734 0.90896 1.24766 0.96031 1.01563 0.98607 1.69682 1.10172 1.45972 1.32158 0.86157 0.78927 0.78137 0.82772 1.21768 1.21801 1.20669 1.75109 1.05068 1.22024 1.09816 1.78311 1.21323 1.03880 1.03640 1.21891 0.97639 0.96246 0.86394 0.91939 0.91828 0.91655 0.90677 0.91176 0.91847 0.91617 0.90965 0.91166 0.86675 0.90530 0.89101 0.90732 0.89868 0.89889 0.79664 0.94351 0.94538 0.78097 0.93514 0.90032 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 7.75 37.16 0.29 -0.65 16 2 C -0.08 -0.56 0.75 -155.66 -0.12 -0.68 16 3 C -0.16 -0.76 7.97 37.16 0.30 -0.46 16 4 C -0.15 -0.69 8.10 37.16 0.30 -0.39 16 5 C 0.53 5.44 6.45 -10.99 -0.07 5.37 16 6 O -0.53 -7.95 15.40 5.56 0.09 -7.86 16 7 N -0.61 -5.18 2.96 -172.77 -0.51 -5.70 16 8 C 0.08 0.36 3.99 -3.71 -0.01 0.35 16 9 C -0.13 -0.52 5.92 -26.61 -0.16 -0.68 16 10 C -0.13 -0.85 4.77 -26.69 -0.13 -0.98 16 11 C 0.14 1.41 3.28 -67.81 -0.22 1.19 16 12 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 13 N -0.29 -4.30 3.26 -54.64 -0.18 -4.47 16 14 C -0.04 -0.67 10.62 -17.05 -0.18 -0.85 16 15 C 0.00 -0.08 6.61 -82.78 -0.55 -0.63 16 16 C 0.23 4.98 6.82 -5.19 -0.04 4.95 16 17 N -0.73 -19.32 5.59 -61.08 -0.34 -19.66 16 18 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -29.13 13.06 55.49 0.72 -28.41 16 22 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 N -0.25 -5.35 12.41 33.29 0.41 -4.94 16 27 N -0.09 -1.74 13.16 60.35 0.79 -0.95 16 28 C 0.10 1.13 6.05 -3.70 -0.02 1.10 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.56 8.01 -51.92 -0.42 0.14 16 32 H 0.07 0.24 4.71 -51.93 -0.24 -0.01 16 33 H 0.07 0.25 8.11 -51.93 -0.42 -0.18 16 34 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 35 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 36 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 37 H 0.07 0.24 4.95 -51.93 -0.26 -0.01 16 38 H 0.12 0.34 2.56 -51.93 -0.13 0.21 16 39 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 40 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.07 0.30 7.99 -51.93 -0.41 -0.12 16 42 H 0.08 0.51 7.24 -51.93 -0.38 0.13 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.19 2.17 7.33 -52.48 -0.38 1.78 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.39 11.11 7.66 -40.82 -0.31 10.80 16 48 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 49 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.11 1.52 7.00 -51.93 -0.36 1.16 16 LS Contribution 390.53 15.07 5.89 5.89 Total: -1.00 -37.21 390.53 -6.94 -44.15 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.93 Total: 4.05 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.86 Total: 0.16 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 0.90 Total: -64.13 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.09 Total: -7.86 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.21 -6.94 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186018136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.551 kcal (2) G-P(sol) polarization free energy of solvation -37.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds