Wall clock time and date at job start Tue Mar 31 2020 20:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46510 * 2 1 4 4 C 1.52999 * 109.46965 * 240.00179 * 2 1 3 5 5 C 1.50698 * 109.47245 * 119.99622 * 2 1 3 6 6 O 1.21276 * 120.00009 * 7.80283 * 5 2 1 7 7 N 1.34773 * 119.99742 * 187.80429 * 5 2 1 8 8 C 1.46925 * 120.63385 * 353.93164 * 7 5 2 9 9 C 1.53190 * 108.78111 * 233.88794 * 8 7 5 10 10 C 1.53046 * 109.31266 * 305.36674 * 9 8 7 11 11 C 1.53041 * 109.53861 * 61.36221 * 10 9 8 12 12 H 1.08998 * 109.49577 * 58.58597 * 11 10 9 13 13 N 1.46497 * 109.52633 * 178.66988 * 11 10 9 14 14 C 1.35318 * 125.86532 * 34.56919 * 13 11 10 15 15 C 1.35347 * 106.17003 * 179.91037 * 14 13 11 16 16 C 1.50700 * 126.74800 * 180.12612 * 15 14 13 17 17 N 1.46503 * 109.47196 * 95.24311 * 16 15 14 18 18 C 1.36940 * 120.00021 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99936 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.97438 * 18 17 16 21 21 N 1.31612 * 119.99738 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46755 * 90.00290 * 22 20 18 24 24 H 1.48491 * 109.47051 * 209.99920 * 22 20 18 25 25 H 1.48496 * 109.47027 * 330.00345 * 22 20 18 26 26 N 1.33770 * 106.49999 * 0.34707 * 15 14 13 27 27 N 1.28631 * 108.88501 * 359.78167 * 26 15 14 28 28 C 1.46931 * 120.62787 * 174.21827 * 7 5 2 29 29 H 1.08997 * 109.47102 * 299.99876 * 1 2 3 30 30 H 1.08995 * 109.47367 * 60.00808 * 1 2 3 31 31 H 1.09010 * 109.46655 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47011 * 190.25840 * 3 2 1 33 33 H 1.09001 * 109.46716 * 310.25469 * 3 2 1 34 34 H 1.08993 * 109.47343 * 70.25673 * 3 2 1 35 35 H 1.08996 * 109.47280 * 312.30033 * 4 2 1 36 36 H 1.09001 * 109.47482 * 72.31203 * 4 2 1 37 37 H 1.09001 * 109.46375 * 192.30674 * 4 2 1 38 38 H 1.09002 * 109.58633 * 353.67955 * 8 7 5 39 39 H 1.09000 * 109.58575 * 114.09684 * 8 7 5 40 40 H 1.08998 * 109.50116 * 185.41520 * 9 8 7 41 41 H 1.08999 * 109.52320 * 65.33048 * 9 8 7 42 42 H 1.09004 * 109.45596 * 301.34751 * 10 9 8 43 43 H 1.08995 * 109.45912 * 181.38459 * 10 9 8 44 44 H 1.08003 * 126.91424 * 0.02562 * 14 13 11 45 45 H 1.09001 * 109.47360 * 215.24379 * 16 15 14 46 46 H 1.08998 * 109.47449 * 335.24524 * 16 15 14 47 47 H 0.96994 * 120.00368 * 359.97438 * 17 16 15 48 48 H 0.96998 * 119.99756 * 179.97438 * 21 20 18 49 49 H 1.08992 * 109.58446 * 245.89994 * 28 7 5 50 50 H 1.08998 * 109.58859 * 6.18925 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 8 1.2535 -1.2930 1.9547 7 7 3.3473 -0.6979 1.5260 8 6 4.3189 -0.1118 0.5927 9 6 5.4066 -1.1493 0.2972 10 6 6.0148 -1.6345 1.6151 11 6 4.9301 -2.3004 2.4649 12 1 4.4966 -3.1345 1.9131 13 7 5.5191 -2.7930 3.7126 14 6 6.5242 -2.2043 4.4013 15 6 6.7497 -2.9874 5.4820 16 6 7.7736 -2.7582 6.5637 17 7 7.1463 -2.0633 7.6906 18 6 7.8873 -1.7465 8.7979 19 1 8.9339 -2.0093 8.8405 20 6 7.2930 -1.0876 9.8655 21 7 6.0174 -0.7678 9.8136 22 14 8.3039 -0.6549 11.3755 23 1 8.9040 0.6920 11.2001 24 1 7.4275 -0.6540 12.5742 25 1 9.3838 -1.6587 11.5525 26 7 5.8882 -4.0073 5.3985 27 7 5.1733 -3.8629 4.3390 28 6 3.8370 -1.2759 2.7850 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.1145 1.4482 -0.1830 33 1 1.5348 2.0064 -0.7843 34 1 1.8337 1.9009 0.9672 35 1 1.5091 -1.6660 -1.3656 36 1 1.8668 -0.0966 -2.1256 37 1 3.1077 -0.9148 -1.1465 38 1 3.8152 0.1637 -0.3339 39 1 4.7701 0.7726 1.0426 40 1 6.1844 -0.6961 -0.3173 41 1 4.9691 -1.9943 -0.2344 42 1 6.4306 -0.7853 2.1575 43 1 6.8059 -2.3546 1.4066 44 1 7.0411 -1.2922 4.1419 45 1 8.1664 -3.7172 6.9014 46 1 8.5882 -2.1502 6.1700 47 1 6.2062 -1.8276 7.6525 48 1 5.6020 -0.3078 10.5598 49 1 4.2488 -0.4865 3.4136 50 1 3.0149 -1.7665 3.3060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186018136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:37 Heat of formation + Delta-G solvation = 61.329618 kcal Electronic energy + Delta-G solvation = -29638.184131 eV Core-core repulsion = 25702.515694 eV Total energy + Delta-G solvation = -3935.668437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.27 seconds Orbital eigenvalues (eV) -44.34790 -41.90524 -39.02939 -37.14100 -36.79184 -35.45931 -33.83479 -33.24950 -31.64460 -31.29534 -28.26069 -28.21364 -27.69843 -27.12398 -25.39797 -24.80199 -23.55855 -22.87445 -22.07569 -21.26488 -19.84721 -19.35108 -18.35774 -17.73003 -17.54337 -17.03852 -16.66089 -16.38003 -15.99389 -15.76629 -15.65004 -15.39951 -15.10161 -15.07667 -14.93783 -14.56285 -14.31543 -13.94614 -13.91330 -13.58586 -13.35320 -13.15734 -13.04924 -12.97070 -12.78709 -12.73398 -12.58318 -12.55693 -12.38775 -12.27867 -12.09033 -11.94311 -11.92017 -11.85441 -11.76106 -11.31338 -11.19064 -10.96015 -10.69597 -10.26529 -9.84850 -9.02809 -7.93485 -5.24314 0.54666 1.16731 1.43194 1.48185 1.50459 1.52253 1.61023 1.92905 2.59338 3.11825 3.24628 3.37853 3.43161 3.49969 3.66176 3.78765 3.85038 3.87768 3.93627 3.96827 4.11141 4.18102 4.22633 4.25112 4.40194 4.48813 4.51536 4.59623 4.64295 4.69007 4.74206 4.78931 4.85299 4.87295 4.92611 4.93221 4.96658 5.06167 5.11302 5.15825 5.21943 5.22805 5.27221 5.36258 5.39139 5.50834 5.64748 6.23517 6.25672 7.01453 7.32291 7.48213 8.03663 8.29586 9.30567 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.002413 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.045235 B =11601.505254 C =12266.215682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 C -0.155 4.155 4 C -0.151 4.151 5 C 0.515 3.485 6 O -0.591 6.591 7 N -0.601 5.601 8 C 0.069 3.931 9 C -0.124 4.124 10 C -0.126 4.126 11 C 0.135 3.865 12 H 0.108 0.892 13 N -0.279 5.279 14 C -0.013 4.013 15 C -0.037 4.037 16 C 0.236 3.764 17 N -0.740 5.740 18 C -0.242 4.242 19 H 0.087 0.913 20 C -0.080 4.080 21 N -0.975 5.975 22 Si 0.981 3.019 23 H -0.281 1.281 24 H -0.300 1.300 25 H -0.267 1.267 26 N -0.298 5.298 27 N -0.120 5.120 28 C 0.107 3.893 29 H 0.040 0.960 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.230 0.770 45 H 0.028 0.972 46 H 0.068 0.932 47 H 0.369 0.631 48 H 0.250 0.750 49 H 0.081 0.919 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 7.615 -34.540 35.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.083 4.083 3 C -0.212 4.212 4 C -0.208 4.208 5 C 0.305 3.695 6 O -0.470 6.470 7 N -0.334 5.334 8 C -0.050 4.050 9 C -0.162 4.162 10 C -0.164 4.164 11 C 0.034 3.966 12 H 0.127 0.873 13 N -0.073 5.073 14 C -0.164 4.164 15 C -0.176 4.176 16 C 0.109 3.891 17 N -0.383 5.383 18 C -0.373 4.373 19 H 0.104 0.896 20 C -0.272 4.272 21 N -0.625 5.625 22 Si 0.809 3.191 23 H -0.208 1.208 24 H -0.227 1.227 25 H -0.191 1.191 26 N -0.164 5.164 27 N -0.098 5.098 28 C -0.018 4.018 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.156 0.844 39 H 0.112 0.888 40 H 0.146 0.854 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.246 0.754 45 H 0.046 0.954 46 H 0.085 0.915 47 H 0.200 0.800 48 H 0.059 0.941 49 H 0.099 0.901 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.250 6.062 -34.084 34.771 hybrid contribution 0.026 0.644 1.793 1.906 sum -3.224 6.706 -32.291 33.137 Atomic orbital electron populations 1.21710 0.92599 1.01910 1.02477 1.20856 0.97560 0.97532 0.92337 1.22334 1.03878 0.91914 1.03075 1.22182 1.02377 1.00738 0.95502 1.21617 0.81365 0.79158 0.87387 1.90711 1.56594 1.46129 1.53598 1.48061 1.06895 1.58844 1.19569 1.22995 0.90148 0.96976 0.94907 1.21995 0.99047 0.99611 0.95570 1.22046 0.95907 1.01942 0.96541 1.22255 0.96023 0.98285 0.80076 0.87349 1.47609 1.23773 1.16292 1.19670 1.23759 0.95445 1.02935 0.94303 1.22363 1.01572 0.94480 0.99185 1.18989 0.90755 0.95654 0.83742 1.42537 1.10358 1.69288 1.16094 1.19715 0.94113 1.29270 0.94237 0.89557 1.25681 0.97161 1.02372 1.01980 1.69869 1.12165 1.47589 1.32926 0.85034 0.77408 0.78341 0.78326 1.20769 1.22738 1.19126 1.75033 1.06307 1.23829 1.11281 1.78218 1.21797 1.05959 1.03856 1.21623 0.96336 0.96199 0.87690 0.94083 0.88950 0.93711 0.88371 0.89038 0.93752 0.92957 0.88174 0.89687 0.84444 0.88773 0.85406 0.90560 0.88546 0.89160 0.75386 0.95368 0.91473 0.79999 0.94142 0.90061 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 7.75 71.98 0.56 -1.35 16 2 C -0.08 -0.95 0.75 -52.92 -0.04 -0.99 16 3 C -0.16 -1.03 7.97 71.98 0.57 -0.45 16 4 C -0.15 -0.89 8.10 71.98 0.58 -0.31 16 5 C 0.51 10.89 6.45 87.66 0.57 11.46 16 6 O -0.59 -19.49 15.40 -3.02 -0.05 -19.54 16 7 N -0.60 -9.67 2.96 -818.90 -2.42 -12.09 16 8 C 0.07 0.36 3.99 86.36 0.34 0.71 16 9 C -0.12 -0.38 5.92 30.67 0.18 -0.20 16 10 C -0.13 -1.15 4.77 30.62 0.15 -1.00 16 11 C 0.14 2.63 3.28 45.07 0.15 2.78 16 12 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 13 N -0.28 -8.05 3.26 -326.78 -1.07 -9.11 16 14 C -0.01 -0.37 10.62 83.49 0.89 0.52 16 15 C -0.04 -1.45 6.61 41.60 0.28 -1.18 16 16 C 0.24 10.03 6.82 85.63 0.58 10.62 16 17 N -0.74 -39.82 5.59 -347.17 -1.94 -41.76 16 18 C -0.24 -13.80 9.99 84.03 0.84 -12.96 16 19 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 20 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 21 N -0.97 -62.40 13.06 21.65 0.28 -62.12 16 22 Si 0.98 47.01 29.55 68.60 2.03 49.03 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 N -0.30 -13.07 12.41 -48.60 -0.60 -13.67 16 27 N -0.12 -4.64 13.16 37.02 0.49 -4.15 16 28 C 0.11 2.39 6.05 86.36 0.52 2.91 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.82 8.01 -2.38 -0.02 0.81 16 32 H 0.10 0.17 4.71 -2.39 -0.01 0.16 16 33 H 0.09 0.27 8.11 -2.39 -0.02 0.25 16 34 H 0.04 0.48 8.10 -2.39 -0.02 0.47 16 35 H 0.05 0.48 8.09 -2.39 -0.02 0.46 16 36 H 0.10 0.09 8.09 -2.39 -0.02 0.07 16 37 H 0.08 0.24 4.95 -2.39 -0.01 0.23 16 38 H 0.14 0.13 2.56 -2.39 -0.01 0.12 16 39 H 0.09 0.27 8.13 -2.39 -0.02 0.25 16 40 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.08 0.28 7.99 -2.39 -0.02 0.26 16 42 H 0.10 0.69 7.24 -2.39 -0.02 0.67 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.23 4.40 7.33 -2.91 -0.02 4.38 16 45 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.37 21.93 7.66 -92.71 -0.71 21.22 16 48 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 49 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.06 1.94 7.00 -2.39 -0.02 1.92 16 Total: -1.00 -88.17 390.53 3.60 -84.57 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.24 Total: 22.56 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.64 Total: 6.27 kcal Atomic # 7 Polarization: -137.64 SS G_CDS: -5.26 Total: -142.90 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -88.17 3.60 -84.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186018136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.900 kcal (2) G-P(sol) polarization free energy of solvation -88.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.27 seconds