Wall clock time and date at job start Tue Mar 31 2020 20:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46772 * 2 1 4 4 C 1.52996 * 109.47157 * 240.00293 * 2 1 3 5 5 C 1.50698 * 109.47264 * 120.00309 * 2 1 3 6 6 O 1.21277 * 119.99762 * 1.81487 * 5 2 1 7 7 N 1.34775 * 120.00164 * 181.82021 * 5 2 1 8 8 C 1.46934 * 120.62593 * 354.94685 * 7 5 2 9 9 C 1.53194 * 108.77188 * 126.41590 * 8 7 5 10 10 C 1.53036 * 109.31228 * 54.63516 * 9 8 7 11 11 C 1.53044 * 109.53961 * 298.63045 * 10 9 8 12 12 H 1.09001 * 109.51832 * 301.40045 * 11 10 9 13 13 N 1.46498 * 109.49877 * 181.31945 * 11 10 9 14 14 C 1.35319 * 125.86709 * 325.16177 * 13 11 10 15 15 C 1.35355 * 106.17288 * 180.02562 * 14 13 11 16 16 C 1.50690 * 126.75053 * 180.02562 * 15 14 13 17 17 N 1.46503 * 109.47102 * 95.00062 * 16 15 14 18 18 C 1.36942 * 119.99917 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00081 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99975 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99693 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46926 * 60.00760 * 22 20 18 24 24 H 1.48503 * 109.47088 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47374 * 300.00428 * 22 20 18 26 26 N 1.33770 * 106.49477 * 0.02562 * 15 14 13 27 27 N 1.28637 * 108.88717 * 359.73260 * 26 15 14 28 28 C 1.46923 * 120.63528 * 174.97101 * 7 5 2 29 29 H 1.08998 * 109.47153 * 299.99718 * 1 2 3 30 30 H 1.09000 * 109.46983 * 60.00140 * 1 2 3 31 31 H 1.09005 * 109.46854 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46750 * 169.19706 * 3 2 1 33 33 H 1.09000 * 109.47293 * 289.19868 * 3 2 1 34 34 H 1.08996 * 109.46969 * 49.20031 * 3 2 1 35 35 H 1.08997 * 109.47678 * 309.99768 * 4 2 1 36 36 H 1.09006 * 109.47224 * 69.99499 * 4 2 1 37 37 H 1.08993 * 109.47496 * 189.99115 * 4 2 1 38 38 H 1.09000 * 109.58229 * 246.20168 * 8 7 5 39 39 H 1.08995 * 109.59102 * 6.62959 * 8 7 5 40 40 H 1.09005 * 109.49646 * 174.58097 * 9 8 7 41 41 H 1.08993 * 109.49762 * 294.67753 * 9 8 7 42 42 H 1.09008 * 109.46023 * 178.61344 * 10 9 8 43 43 H 1.09003 * 109.46658 * 58.65463 * 10 9 8 44 44 H 1.07997 * 126.91143 * 359.97438 * 14 13 11 45 45 H 1.08998 * 109.47257 * 215.00081 * 16 15 14 46 46 H 1.09000 * 109.47172 * 335.00036 * 16 15 14 47 47 H 0.96994 * 120.00189 * 359.97438 * 17 16 15 48 48 H 0.97006 * 119.99717 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.58171 * 353.37311 * 28 7 5 50 50 H 1.09000 * 109.58795 * 113.79284 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7105 1.2304 6 8 1.2448 -1.2001 2.0119 7 7 3.3569 -0.8016 1.4624 8 6 4.3257 -0.3116 0.4723 9 6 5.2819 0.6673 1.1609 10 6 5.9152 -0.0140 2.3761 11 6 4.8210 -0.4023 3.3732 12 1 4.2722 0.4892 3.6771 13 7 5.4308 -1.0260 4.5502 14 6 6.5273 -1.8190 4.5486 15 6 6.7387 -2.1726 5.8379 16 6 7.8438 -3.0529 6.3619 17 7 8.9591 -2.2186 6.8159 18 6 10.0839 -2.8023 7.3350 19 1 10.1489 -3.8778 7.4093 20 6 11.1409 -2.0118 7.7647 21 7 11.0618 -0.7011 7.6736 22 14 12.6748 -2.8080 8.4734 23 1 13.2850 -3.7001 7.4551 24 1 13.6483 -1.7536 8.8556 25 1 12.3105 -3.6030 9.6735 26 7 5.7736 -1.5868 6.5555 27 7 5.0182 -0.9105 5.7638 28 6 3.8595 -1.3933 2.7097 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1128 1.4486 0.1926 33 1 1.8424 1.8978 -0.9705 34 1 1.5279 2.0089 0.7779 35 1 1.5384 -1.6843 -1.3431 36 1 1.8297 -0.1147 -2.1303 37 1 3.1153 -0.8782 -1.1647 38 1 4.8910 -1.1511 0.0678 39 1 3.7983 0.1987 -0.3336 40 1 6.0639 0.9645 0.4620 41 1 4.7289 1.5488 1.4851 42 1 6.6147 0.6722 2.8537 43 1 6.4474 -0.9092 2.0543 44 1 7.1149 -2.1116 3.6910 45 1 7.4707 -3.6464 7.1966 46 1 8.1863 -3.7171 5.5684 47 1 8.9012 -1.2527 6.7481 48 1 11.8003 -0.1487 7.9742 49 1 3.0244 -1.5967 3.3800 50 1 4.3868 -2.3210 2.4876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186018137.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:45 Heat of formation + Delta-G solvation = 89.584734 kcal Electronic energy + Delta-G solvation = -29534.552058 eV Core-core repulsion = 25600.108856 eV Total energy + Delta-G solvation = -3934.443203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.02312 -41.27270 -38.27273 -36.48505 -35.11774 -34.29394 -32.75523 -31.82512 -30.39625 -29.87051 -27.97091 -27.66946 -26.52330 -25.85112 -24.50786 -23.05805 -22.69545 -21.95104 -20.68233 -20.44743 -19.20780 -17.59042 -17.16821 -16.82068 -16.70624 -16.20208 -15.66057 -15.06133 -15.03523 -14.78728 -14.63291 -14.42148 -14.33300 -13.99776 -13.65831 -13.35030 -13.19220 -13.10283 -12.94376 -12.74882 -12.61701 -12.46585 -12.25267 -12.12864 -11.84365 -11.82544 -11.64077 -11.49895 -11.36726 -11.14989 -10.95469 -10.87524 -10.77908 -10.42021 -10.12382 -10.05600 -9.90278 -9.71142 -9.18599 -8.86245 -8.80038 -6.89910 -5.72214 -3.01728 1.80708 2.07701 2.22136 2.70420 2.94521 3.47267 3.51608 3.52891 3.79284 3.95490 4.12551 4.20112 4.22466 4.30709 4.34322 4.56123 4.59431 4.64283 4.70500 4.79063 4.90040 4.94182 5.03416 5.09010 5.11495 5.16120 5.21164 5.27523 5.31605 5.34330 5.38328 5.47223 5.47889 5.50394 5.58796 5.61415 5.65659 5.70405 5.79521 5.88707 5.91573 6.19760 6.43232 6.68291 6.77809 6.82741 6.85592 7.70845 7.72297 8.45114 8.87673 9.56757 10.12744 10.48872 11.50498 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002144 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.514901 B =13055.725090 C =13482.213032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.160 4.160 4 C -0.159 4.159 5 C 0.527 3.473 6 O -0.530 6.530 7 N -0.608 5.608 8 C 0.078 3.922 9 C -0.133 4.133 10 C -0.133 4.133 11 C 0.138 3.862 12 H 0.113 0.887 13 N -0.295 5.295 14 C -0.043 4.043 15 C -0.004 4.004 16 C 0.233 3.767 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.285 1.285 26 N -0.253 5.253 27 N -0.094 5.094 28 C 0.105 3.895 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.186 0.814 45 H 0.039 0.961 46 H 0.037 0.963 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.104 0.896 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.435 4.301 -25.780 31.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 C -0.217 4.217 4 C -0.216 4.216 5 C 0.315 3.685 6 O -0.405 6.405 7 N -0.343 5.343 8 C -0.044 4.044 9 C -0.171 4.171 10 C -0.171 4.171 11 C 0.034 3.966 12 H 0.131 0.869 13 N -0.089 5.089 14 C -0.194 4.194 15 C -0.142 4.142 16 C 0.104 3.896 17 N -0.370 5.370 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.741 3.259 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.212 1.212 26 N -0.120 5.120 27 N -0.072 5.072 28 C -0.019 4.019 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.203 0.797 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.123 0.877 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.834 4.540 -24.356 31.737 hybrid contribution 1.765 -0.406 -0.354 1.845 sum -18.069 4.134 -24.710 30.890 Atomic orbital electron populations 1.21683 0.91618 1.03006 1.02224 1.20779 0.98268 0.96365 0.93355 1.22285 1.02367 0.93615 1.03409 1.22277 1.02246 1.01071 0.95982 1.20710 0.81264 0.79157 0.87379 1.90725 1.54699 1.46885 1.48234 1.47949 1.05841 1.61785 1.18692 1.22556 0.91388 0.98404 0.92016 1.21969 0.99395 0.98617 0.97164 1.21959 0.97119 1.02751 0.95293 1.21845 0.95160 0.97072 0.82495 0.86866 1.47231 1.20319 1.33681 1.07662 1.23299 0.93777 1.01039 1.01252 1.22470 0.98866 1.02900 0.89944 1.18943 0.83632 0.90502 0.96567 1.42299 1.13997 1.05606 1.75133 1.19190 0.92773 0.91736 1.33340 0.90942 1.24761 0.98720 0.95403 1.02098 1.69675 1.32517 1.02774 1.53136 0.86227 0.82825 0.77857 0.79016 1.21258 1.21758 1.21186 1.75110 1.03815 1.08003 1.25059 1.78309 1.22006 1.20188 0.86686 1.21849 0.98561 0.94981 0.86488 0.91847 0.91830 0.91834 0.90676 0.91008 0.91698 0.91752 0.90997 0.90820 0.90526 0.86571 0.88973 0.90564 0.89524 0.89920 0.79658 0.94318 0.94518 0.78116 0.93494 0.87735 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 7.72 37.16 0.29 -0.56 16 2 C -0.08 -0.51 0.75 -155.66 -0.12 -0.63 16 3 C -0.16 -0.68 8.09 37.16 0.30 -0.38 16 4 C -0.16 -0.64 8.09 37.16 0.30 -0.34 16 5 C 0.53 4.97 6.49 -10.99 -0.07 4.89 16 6 O -0.53 -7.33 15.42 5.56 0.09 -7.25 16 7 N -0.61 -4.66 2.97 -172.77 -0.51 -5.18 16 8 C 0.08 0.33 3.93 -3.71 -0.01 0.32 16 9 C -0.13 -0.57 5.75 -26.61 -0.15 -0.72 16 10 C -0.13 -0.95 4.77 -26.69 -0.13 -1.08 16 11 C 0.14 1.38 3.28 -67.81 -0.22 1.16 16 12 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 13 N -0.29 -4.26 3.26 -54.64 -0.18 -4.44 16 14 C -0.04 -0.66 10.62 -17.04 -0.18 -0.84 16 15 C 0.00 -0.08 6.61 -82.78 -0.55 -0.63 16 16 C 0.23 4.97 6.82 -5.20 -0.04 4.94 16 17 N -0.73 -19.17 5.59 -61.09 -0.34 -19.52 16 18 C -0.24 -6.80 9.99 -15.06 -0.15 -6.96 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 22 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 N -0.25 -5.33 12.41 33.29 0.41 -4.92 16 27 N -0.09 -1.73 13.16 60.35 0.79 -0.94 16 28 C 0.11 1.02 6.03 -3.71 -0.02 1.00 16 29 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.07 0.26 3.88 -51.93 -0.20 0.06 16 33 H 0.07 0.19 8.01 -51.93 -0.42 -0.22 16 34 H 0.06 0.34 8.10 -51.93 -0.42 -0.08 16 35 H 0.06 0.32 8.11 -51.93 -0.42 -0.11 16 36 H 0.07 0.18 8.01 -51.93 -0.42 -0.23 16 37 H 0.07 0.23 4.74 -51.93 -0.25 -0.02 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.12 0.31 2.83 -51.93 -0.15 0.17 16 40 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.33 7.43 -51.93 -0.39 -0.05 16 42 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 43 H 0.08 0.54 7.24 -51.93 -0.38 0.16 16 44 H 0.19 2.17 7.34 -52.49 -0.39 1.78 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.39 10.98 7.66 -40.82 -0.31 10.66 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 49 H 0.10 1.30 7.04 -51.93 -0.37 0.94 16 50 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 389.04 15.07 5.86 5.86 Total: -1.00 -36.71 389.04 -6.89 -43.60 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.86 Total: 3.62 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.85 Total: -0.32 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: 0.90 Total: -63.11 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.09 Total: -7.25 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.71 -6.89 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186018137.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.183 kcal (2) G-P(sol) polarization free energy of solvation -36.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds