Wall clock time and date at job start Tue Mar 31 2020 20:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46772 * 2 1 4 4 C 1.52996 * 109.47157 * 240.00293 * 2 1 3 5 5 C 1.50698 * 109.47264 * 120.00309 * 2 1 3 6 6 O 1.21277 * 119.99762 * 1.81487 * 5 2 1 7 7 N 1.34775 * 120.00164 * 181.82021 * 5 2 1 8 8 C 1.46934 * 120.62593 * 354.94685 * 7 5 2 9 9 C 1.53194 * 108.77188 * 126.41590 * 8 7 5 10 10 C 1.53036 * 109.31228 * 54.63516 * 9 8 7 11 11 C 1.53044 * 109.53961 * 298.63045 * 10 9 8 12 12 H 1.09001 * 109.51832 * 301.40045 * 11 10 9 13 13 N 1.46498 * 109.49877 * 181.31945 * 11 10 9 14 14 C 1.35319 * 125.86709 * 325.16177 * 13 11 10 15 15 C 1.35355 * 106.17288 * 180.02562 * 14 13 11 16 16 C 1.50690 * 126.75053 * 180.02562 * 15 14 13 17 17 N 1.46503 * 109.47102 * 95.00062 * 16 15 14 18 18 C 1.36942 * 119.99917 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00081 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99975 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99693 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46926 * 60.00760 * 22 20 18 24 24 H 1.48503 * 109.47088 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47374 * 300.00428 * 22 20 18 26 26 N 1.33770 * 106.49477 * 0.02562 * 15 14 13 27 27 N 1.28637 * 108.88717 * 359.73260 * 26 15 14 28 28 C 1.46923 * 120.63528 * 174.97101 * 7 5 2 29 29 H 1.08998 * 109.47153 * 299.99718 * 1 2 3 30 30 H 1.09000 * 109.46983 * 60.00140 * 1 2 3 31 31 H 1.09005 * 109.46854 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46750 * 169.19706 * 3 2 1 33 33 H 1.09000 * 109.47293 * 289.19868 * 3 2 1 34 34 H 1.08996 * 109.46969 * 49.20031 * 3 2 1 35 35 H 1.08997 * 109.47678 * 309.99768 * 4 2 1 36 36 H 1.09006 * 109.47224 * 69.99499 * 4 2 1 37 37 H 1.08993 * 109.47496 * 189.99115 * 4 2 1 38 38 H 1.09000 * 109.58229 * 246.20168 * 8 7 5 39 39 H 1.08995 * 109.59102 * 6.62959 * 8 7 5 40 40 H 1.09005 * 109.49646 * 174.58097 * 9 8 7 41 41 H 1.08993 * 109.49762 * 294.67753 * 9 8 7 42 42 H 1.09008 * 109.46023 * 178.61344 * 10 9 8 43 43 H 1.09003 * 109.46658 * 58.65463 * 10 9 8 44 44 H 1.07997 * 126.91143 * 359.97438 * 14 13 11 45 45 H 1.08998 * 109.47257 * 215.00081 * 16 15 14 46 46 H 1.09000 * 109.47172 * 335.00036 * 16 15 14 47 47 H 0.96994 * 120.00189 * 359.97438 * 17 16 15 48 48 H 0.97006 * 119.99717 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.58171 * 353.37311 * 28 7 5 50 50 H 1.09000 * 109.58795 * 113.79284 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7105 1.2304 6 8 1.2448 -1.2001 2.0119 7 7 3.3569 -0.8016 1.4624 8 6 4.3257 -0.3116 0.4723 9 6 5.2819 0.6673 1.1609 10 6 5.9152 -0.0140 2.3761 11 6 4.8210 -0.4023 3.3732 12 1 4.2722 0.4892 3.6771 13 7 5.4308 -1.0260 4.5502 14 6 6.5273 -1.8190 4.5486 15 6 6.7387 -2.1726 5.8379 16 6 7.8438 -3.0529 6.3619 17 7 8.9591 -2.2186 6.8159 18 6 10.0839 -2.8023 7.3350 19 1 10.1489 -3.8778 7.4093 20 6 11.1409 -2.0118 7.7647 21 7 11.0618 -0.7011 7.6736 22 14 12.6748 -2.8080 8.4734 23 1 13.2850 -3.7001 7.4551 24 1 13.6483 -1.7536 8.8556 25 1 12.3105 -3.6030 9.6735 26 7 5.7736 -1.5868 6.5555 27 7 5.0182 -0.9105 5.7638 28 6 3.8595 -1.3933 2.7097 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1128 1.4486 0.1926 33 1 1.8424 1.8978 -0.9705 34 1 1.5279 2.0089 0.7779 35 1 1.5384 -1.6843 -1.3431 36 1 1.8297 -0.1147 -2.1303 37 1 3.1153 -0.8782 -1.1647 38 1 4.8910 -1.1511 0.0678 39 1 3.7983 0.1987 -0.3336 40 1 6.0639 0.9645 0.4620 41 1 4.7289 1.5488 1.4851 42 1 6.6147 0.6722 2.8537 43 1 6.4474 -0.9092 2.0543 44 1 7.1149 -2.1116 3.6910 45 1 7.4707 -3.6464 7.1966 46 1 8.1863 -3.7171 5.5684 47 1 8.9012 -1.2527 6.7481 48 1 11.8003 -0.1487 7.9742 49 1 3.0244 -1.5967 3.3800 50 1 4.3868 -2.3210 2.4876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186018137.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:44 Heat of formation + Delta-G solvation = 63.285637 kcal Electronic energy + Delta-G solvation = -29535.692473 eV Core-core repulsion = 25600.108856 eV Total energy + Delta-G solvation = -3935.583617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.34866 -41.92522 -39.02730 -37.14705 -36.78303 -35.45562 -33.83053 -33.25416 -31.63821 -31.30603 -28.27457 -28.17456 -27.69261 -27.11138 -25.40328 -24.79522 -23.53878 -22.88820 -22.08945 -21.26440 -19.82277 -19.33911 -18.35598 -17.69056 -17.58170 -17.03780 -16.60823 -16.40826 -16.04398 -15.74426 -15.66044 -15.36981 -15.14091 -15.06574 -14.93785 -14.55611 -14.32302 -13.91138 -13.85278 -13.66909 -13.36209 -13.09311 -13.03413 -12.91368 -12.74431 -12.72349 -12.59327 -12.55333 -12.37117 -12.27995 -12.12282 -11.95039 -11.89837 -11.86488 -11.75839 -11.35794 -11.18376 -10.94088 -10.67456 -10.26402 -9.84968 -9.01728 -7.92448 -5.23059 0.55490 1.13288 1.43676 1.50895 1.51381 1.54685 1.60586 1.93668 2.60249 3.10753 3.26352 3.38192 3.42866 3.50181 3.66790 3.78803 3.84081 3.90180 3.93587 3.95213 4.10914 4.18265 4.23089 4.27334 4.38056 4.47597 4.52247 4.58750 4.63995 4.72132 4.73582 4.80098 4.85210 4.86879 4.93731 4.94630 4.96779 5.06496 5.11155 5.14892 5.20851 5.23068 5.27891 5.36095 5.38461 5.51452 5.64658 6.23257 6.26874 7.01750 7.33735 7.48043 8.04602 8.31106 9.31237 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002144 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.514901 B =13055.725090 C =13482.213032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.158 4.158 4 C -0.156 4.156 5 C 0.517 3.483 6 O -0.587 6.587 7 N -0.602 5.602 8 C 0.072 3.928 9 C -0.125 4.125 10 C -0.129 4.129 11 C 0.134 3.866 12 H 0.106 0.894 13 N -0.279 5.279 14 C -0.013 4.013 15 C -0.037 4.037 16 C 0.236 3.764 17 N -0.738 5.738 18 C -0.244 4.244 19 H 0.084 0.916 20 C -0.078 4.078 21 N -0.973 5.973 22 Si 0.980 3.020 23 H -0.270 1.270 24 H -0.298 1.298 25 H -0.280 1.280 26 N -0.298 5.298 27 N -0.119 5.119 28 C 0.112 3.888 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.123 0.877 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.229 0.771 45 H 0.027 0.973 46 H 0.066 0.934 47 H 0.371 0.629 48 H 0.251 0.749 49 H 0.067 0.933 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.120 4.281 -29.593 34.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.084 4.084 3 C -0.214 4.214 4 C -0.213 4.213 5 C 0.307 3.693 6 O -0.467 6.467 7 N -0.335 5.335 8 C -0.048 4.048 9 C -0.164 4.164 10 C -0.168 4.168 11 C 0.032 3.968 12 H 0.124 0.876 13 N -0.073 5.073 14 C -0.165 4.165 15 C -0.176 4.176 16 C 0.108 3.892 17 N -0.381 5.381 18 C -0.376 4.376 19 H 0.102 0.898 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.808 3.192 23 H -0.196 1.196 24 H -0.224 1.224 25 H -0.207 1.207 26 N -0.164 5.164 27 N -0.098 5.098 28 C -0.013 4.013 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.156 0.844 40 H 0.141 0.859 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.246 0.754 45 H 0.045 0.955 46 H 0.083 0.917 47 H 0.202 0.798 48 H 0.059 0.941 49 H 0.086 0.914 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.542 4.506 -28.211 34.058 hybrid contribution 1.228 -0.404 0.756 1.498 sum -17.314 4.102 -27.455 32.716 Atomic orbital electron populations 1.21695 0.92526 1.01925 1.02450 1.20844 0.97608 0.97416 0.92500 1.22314 1.02789 0.91918 1.04414 1.22307 1.02869 1.00651 0.95472 1.21516 0.81346 0.78506 0.87891 1.90700 1.56249 1.49386 1.50353 1.48056 1.06071 1.61000 1.18351 1.22921 0.90945 0.99420 0.91497 1.22004 1.00026 0.98125 0.96240 1.22040 0.95900 1.03509 0.95303 1.22243 0.96428 0.96500 0.81604 0.87621 1.47591 1.19627 1.32423 1.07667 1.23749 0.93019 0.98809 1.00889 1.22348 0.99051 1.04517 0.91644 1.18968 0.82906 0.90442 0.96836 1.42498 1.14946 1.05328 1.75348 1.19661 0.93281 0.92401 1.32225 0.89777 1.25656 1.02142 0.95946 1.03276 1.69853 1.33317 1.04286 1.54862 0.85116 0.78734 0.76829 0.78476 1.19585 1.22392 1.20669 1.75035 1.05080 1.09395 1.26924 1.78214 1.22454 1.20860 0.88223 1.21611 0.97143 0.95485 0.87043 0.93901 0.89223 0.93618 0.89478 0.88445 0.93175 0.92942 0.88526 0.89373 0.88443 0.84427 0.85882 0.90572 0.90528 0.88295 0.75445 0.95528 0.91665 0.79829 0.94072 0.91393 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 7.72 71.98 0.56 -1.11 16 2 C -0.08 -0.84 0.75 -52.93 -0.04 -0.88 16 3 C -0.16 -0.89 8.09 71.98 0.58 -0.31 16 4 C -0.16 -0.76 8.09 71.98 0.58 -0.17 16 5 C 0.52 9.64 6.49 87.66 0.57 10.21 16 6 O -0.59 -17.37 15.42 -3.02 -0.05 -17.41 16 7 N -0.60 -8.30 2.97 -818.92 -2.43 -10.73 16 8 C 0.07 0.32 3.93 86.36 0.34 0.66 16 9 C -0.13 -0.55 5.75 30.67 0.18 -0.38 16 10 C -0.13 -1.45 4.77 30.62 0.15 -1.30 16 11 C 0.13 2.55 3.28 45.07 0.15 2.70 16 12 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 13 N -0.28 -7.97 3.26 -326.79 -1.06 -9.03 16 14 C -0.01 -0.37 10.62 83.49 0.89 0.51 16 15 C -0.04 -1.44 6.61 41.59 0.28 -1.16 16 16 C 0.24 10.06 6.82 85.63 0.58 10.64 16 17 N -0.74 -39.28 5.59 -347.18 -1.94 -41.23 16 18 C -0.24 -13.83 9.99 84.03 0.84 -12.99 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 21 N -0.97 -61.03 13.06 21.65 0.28 -60.75 16 22 Si 0.98 46.46 29.55 68.60 2.03 48.48 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 26 N -0.30 -13.01 12.41 -48.61 -0.60 -13.61 16 27 N -0.12 -4.57 13.16 37.02 0.49 -4.08 16 28 C 0.11 2.11 6.03 86.36 0.52 2.63 16 29 H 0.04 0.71 8.12 -2.39 -0.02 0.69 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.74 8.08 -2.38 -0.02 0.72 16 32 H 0.09 0.27 3.88 -2.39 -0.01 0.26 16 33 H 0.10 0.10 8.01 -2.39 -0.02 0.08 16 34 H 0.05 0.45 8.10 -2.39 -0.02 0.43 16 35 H 0.05 0.41 8.11 -2.39 -0.02 0.39 16 36 H 0.10 0.04 8.01 -2.38 -0.02 0.02 16 37 H 0.09 0.16 4.74 -2.39 -0.01 0.15 16 38 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.14 0.08 2.83 -2.39 -0.01 0.07 16 40 H 0.12 -0.05 8.14 -2.38 -0.02 -0.07 16 41 H 0.08 0.39 7.43 -2.39 -0.02 0.37 16 42 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.10 0.83 7.24 -2.39 -0.02 0.81 16 44 H 0.23 4.41 7.34 -2.91 -0.02 4.39 16 45 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.37 21.57 7.66 -92.71 -0.71 20.86 16 48 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 49 H 0.07 1.81 7.04 -2.39 -0.02 1.80 16 50 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -85.17 389.04 3.59 -81.58 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.25 Total: 21.81 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 6.63 Total: 4.97 kcal Atomic # 7 Polarization: -134.16 SS G_CDS: -5.27 Total: -139.43 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.05 Total: -17.41 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -85.17 3.59 -81.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186018137.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.867 kcal (2) G-P(sol) polarization free energy of solvation -85.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds