Wall clock time and date at job start Tue Mar 31 2020 18:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33246 * 125.52865 * 2 1 4 4 C 1.30829 * 109.82736 * 179.97438 * 3 2 1 5 5 C 1.50711 * 125.95548 * 179.97438 * 4 3 2 6 6 N 1.34426 * 108.08403 * 0.02562 * 4 3 2 7 7 C 1.46498 * 126.82544 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47378 * 90.00070 * 7 6 4 9 9 C 1.52999 * 109.47303 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47056 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99981 * 354.22242 * 10 9 8 12 12 N 1.34777 * 120.00104 * 174.21652 * 10 9 8 13 13 C 1.48211 * 119.97347 * 174.83394 * 12 10 9 14 14 C 1.47140 * 110.33837 * 102.51654 * 13 12 10 15 15 C 1.53786 * 111.84325 * 58.30047 * 14 13 12 16 16 N 1.43464 * 107.96277 * 281.66674 * 15 14 13 17 17 C 1.36940 * 118.93682 * 273.60929 * 16 15 14 18 18 H 1.07996 * 120.00169 * 29.24688 * 17 16 15 19 19 C 1.38808 * 120.00152 * 209.24737 * 17 16 15 20 20 N 1.31616 * 120.00451 * 198.71733 * 19 17 16 21 21 Si 1.86807 * 119.99837 * 18.71327 * 19 17 16 22 22 H 1.48497 * 109.47086 * 271.94001 * 21 19 17 23 23 H 1.48500 * 109.47187 * 151.93865 * 21 19 17 24 24 H 1.48497 * 109.46776 * 31.93730 * 21 19 17 25 25 C 1.48853 * 122.12257 * 93.88295 * 16 15 14 26 26 C 1.43627 * 119.96487 * 354.86375 * 12 10 9 27 27 N 1.30716 * 125.52709 * 180.28665 * 2 1 3 28 28 H 1.09001 * 109.47373 * 90.02315 * 1 2 3 29 29 H 1.09003 * 109.47296 * 210.02528 * 1 2 3 30 30 H 1.08998 * 109.46736 * 330.02034 * 1 2 3 31 31 H 1.08994 * 109.46663 * 270.04118 * 5 4 3 32 32 H 1.08993 * 109.47025 * 30.04334 * 5 4 3 33 33 H 1.09004 * 109.46712 * 150.04357 * 5 4 3 34 34 H 1.09003 * 109.46752 * 329.99794 * 7 6 4 35 35 H 1.09001 * 109.46866 * 210.00022 * 7 6 4 36 36 H 1.09001 * 109.47191 * 59.99619 * 8 7 6 37 37 H 1.09007 * 109.46737 * 300.00080 * 8 7 6 38 38 H 1.08993 * 109.46838 * 59.99718 * 9 8 7 39 39 H 1.09001 * 109.46793 * 299.99861 * 9 8 7 40 40 H 1.09001 * 109.31886 * 342.25259 * 13 12 10 41 41 H 1.08996 * 109.18666 * 222.69284 * 13 12 10 42 42 H 1.09004 * 109.00770 * 297.69092 * 14 13 12 43 43 H 1.09006 * 108.94288 * 178.86736 * 14 13 12 44 44 H 1.08998 * 109.76739 * 162.04877 * 15 14 13 45 45 H 1.09002 * 109.81000 * 41.30470 * 15 14 13 46 46 H 0.97002 * 120.00759 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.47862 * 80.35177 * 25 16 15 48 48 H 1.09000 * 109.48132 * 200.38492 * 25 16 15 49 49 H 1.08994 * 108.87486 * 31.41741 * 26 12 10 50 50 H 1.09003 * 108.86932 * 149.96103 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5407 0.7303 0.0006 5 6 4.7228 1.6653 0.0002 6 7 3.5966 -0.6128 0.0003 7 6 4.8048 -1.4413 0.0003 8 6 5.2253 -1.7300 1.4427 9 6 6.4875 -2.5948 1.4426 10 6 6.9021 -2.8786 2.8633 11 8 6.3159 -2.3487 3.7834 12 7 7.9241 -3.7215 3.1116 13 6 8.4060 -3.9122 4.5001 14 6 7.9039 -5.1832 5.0456 15 6 8.3400 -6.3848 4.1907 16 7 7.4898 -6.4384 3.0364 17 6 6.2958 -7.1033 3.1233 18 1 5.7789 -7.1637 4.0696 19 6 5.7497 -7.6995 1.9950 20 7 4.4709 -8.0098 1.9682 21 14 6.8298 -8.0615 0.5145 22 1 6.8578 -6.8761 -0.3795 23 1 6.2815 -9.2266 -0.2253 24 1 8.2087 -8.3696 0.9713 25 6 7.8664 -5.7998 1.7457 26 6 8.5456 -4.4335 2.0301 27 7 2.2665 -1.0638 -0.0053 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 5.0075 1.8905 -1.0275 32 1 4.4557 2.5887 0.5140 33 1 5.5600 1.1927 0.5139 34 1 5.6078 -0.9127 -0.5135 35 1 4.6010 -2.3807 -0.5137 36 1 4.4223 -2.2585 1.9564 37 1 5.4290 -0.7906 1.9566 38 1 7.2902 -2.0659 0.9290 39 1 6.2842 -3.5342 0.9284 40 1 8.0528 -3.0887 5.1207 41 1 9.4959 -3.9242 4.5026 42 1 6.8149 -5.1490 5.0806 43 1 8.2875 -5.3099 6.0580 44 1 8.2371 -7.3041 4.7672 45 1 9.3770 -6.2595 3.8791 46 1 4.0893 -8.4268 1.1799 47 1 8.5579 -6.4481 1.2075 48 1 6.9717 -5.6426 1.1432 49 1 8.4963 -3.8207 1.1300 50 1 9.5920 -4.6097 2.2793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197778097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:26 Heat of formation + Delta-G solvation = 76.280070 kcal Electronic energy + Delta-G solvation = -30075.468392 eV Core-core repulsion = 26140.448256 eV Total energy + Delta-G solvation = -3935.020136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.15883 -39.99462 -37.38393 -35.79182 -34.41362 -33.39896 -32.86330 -32.06279 -31.43074 -29.66270 -28.51257 -27.82557 -26.52714 -25.62399 -23.49118 -23.09442 -21.56974 -20.74451 -20.51618 -19.98889 -18.66927 -17.38175 -16.71488 -16.46336 -16.04534 -15.89559 -15.78022 -15.19947 -14.69708 -14.43147 -14.21237 -13.94041 -13.66223 -13.61253 -13.50516 -13.21959 -13.01840 -12.93285 -12.84614 -12.57563 -12.46969 -12.26810 -12.14450 -12.09237 -11.75304 -11.65557 -11.58678 -11.43628 -11.06048 -10.86526 -10.45932 -10.43109 -10.15082 -10.03018 -9.99736 -9.73406 -9.59322 -9.47281 -9.32734 -8.66930 -8.25006 -6.96088 -5.98406 -3.38517 1.56324 2.22264 2.83908 2.92451 3.20289 3.35257 3.39482 3.42623 3.92285 4.29567 4.45459 4.52723 4.59091 4.78339 4.81799 4.91533 5.03654 5.13623 5.14517 5.15513 5.25066 5.30685 5.31740 5.43329 5.46662 5.49617 5.50673 5.54773 5.69155 5.73289 5.74282 5.76595 5.81971 5.96690 5.99880 6.19784 6.24109 6.27441 6.31043 6.39960 6.45579 6.46447 6.66906 6.78384 6.84472 7.07727 7.75290 7.97626 8.09933 8.34163 8.50600 8.94059 9.68588 10.01116 11.17736 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.003355 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.012107 B = 8343.905657 C = 9558.994158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.215 3.785 3 N -0.546 5.546 4 C 0.274 3.726 5 C -0.077 4.077 6 N -0.372 5.372 7 C 0.126 3.874 8 C -0.117 4.117 9 C -0.138 4.138 10 C 0.524 3.476 11 O -0.548 6.548 12 N -0.588 5.588 13 C 0.130 3.870 14 C -0.170 4.170 15 C 0.163 3.837 16 N -0.599 5.599 17 C -0.265 4.265 18 H 0.082 0.918 19 C 0.026 3.974 20 N -0.906 5.906 21 Si 0.886 3.114 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.274 1.274 25 C 0.102 3.898 26 C 0.094 3.906 27 N -0.311 5.311 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.035 0.965 46 H 0.263 0.737 47 H 0.037 0.963 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.634 16.676 -5.221 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 N -0.276 5.276 4 C -0.002 4.002 5 C -0.136 4.136 6 N -0.162 5.162 7 C 0.004 3.996 8 C -0.156 4.156 9 C -0.178 4.178 10 C 0.312 3.688 11 O -0.426 6.426 12 N -0.320 5.320 13 C 0.009 3.991 14 C -0.211 4.211 15 C 0.035 3.965 16 N -0.322 5.322 17 C -0.393 4.393 18 H 0.100 0.900 19 C -0.173 4.173 20 N -0.548 5.548 21 Si 0.716 3.284 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.200 1.200 25 C -0.024 4.024 26 C -0.033 4.033 27 N -0.139 5.139 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.890 16.409 -4.822 18.088 hybrid contribution 0.788 -0.594 -0.963 1.379 sum 6.678 15.814 -5.786 18.115 Atomic orbital electron populations 1.20066 0.84033 1.04011 1.03495 1.24270 0.98247 0.85765 0.98438 1.70320 0.99839 1.31047 1.26389 1.24313 0.95283 0.83980 0.96616 1.20387 0.91498 0.97517 1.04218 1.50326 1.06008 1.05417 1.54439 1.21904 0.82327 0.96256 0.99121 1.21671 0.98111 1.01198 0.94597 1.21588 0.98231 1.02325 0.95705 1.20327 0.78996 0.78492 0.90999 1.90659 1.52692 1.52619 1.46642 1.47347 1.34488 1.42071 1.08062 1.20576 0.97505 0.98896 0.82112 1.21817 1.03463 0.96756 0.99016 1.20351 0.92180 0.95536 0.88386 1.43894 1.20352 1.60642 1.07309 1.18898 0.95334 1.27324 0.97758 0.89994 1.25345 0.95757 0.98343 0.97842 1.69834 1.10610 1.44698 1.29680 0.86993 0.81115 0.77098 0.83163 1.21589 1.23213 1.19968 1.22700 0.98780 0.91206 0.89731 1.21873 0.97152 0.94547 0.89693 1.78128 0.86718 1.22490 1.26596 0.90071 0.89929 0.89754 0.89233 0.88523 0.89808 0.88429 0.87919 0.89799 0.90651 0.88871 0.88141 0.90380 0.92051 0.90806 0.92344 0.92659 0.94645 0.92745 0.94577 0.91066 0.91030 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.51 36.00 0.38 -0.22 16 2 C 0.21 3.17 8.14 -156.85 -1.28 1.90 16 3 N -0.55 -7.98 11.19 -8.16 -0.09 -8.07 16 4 C 0.27 3.46 7.98 -155.69 -1.24 2.22 16 5 C -0.08 -0.58 10.01 36.01 0.36 -0.22 16 6 N -0.37 -5.15 3.64 -58.34 -0.21 -5.36 16 7 C 0.13 1.40 6.13 -4.05 -0.02 1.37 16 8 C -0.12 -1.55 4.85 -26.73 -0.13 -1.68 16 9 C -0.14 -1.78 4.12 -27.88 -0.11 -1.89 16 10 C 0.52 8.89 7.65 -10.98 -0.08 8.81 16 11 O -0.55 -11.20 15.46 5.56 0.09 -11.12 16 12 N -0.59 -9.39 2.46 -176.43 -0.43 -9.83 16 13 C 0.13 1.99 5.67 -5.91 -0.03 1.95 16 14 C -0.17 -2.90 5.64 -29.14 -0.16 -3.07 16 15 C 0.16 3.03 5.63 -5.24 -0.03 3.00 16 16 N -0.60 -13.31 2.28 -171.79 -0.39 -13.71 16 17 C -0.26 -7.20 9.67 -15.06 -0.15 -7.35 16 18 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 19 C 0.03 0.74 5.20 -17.43 -0.09 0.65 16 20 N -0.91 -27.58 13.97 55.49 0.78 -26.81 16 21 Si 0.89 21.37 23.99 -169.99 -4.08 17.30 16 22 H -0.29 -6.47 6.57 56.52 0.37 -6.10 16 23 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 24 H -0.27 -6.44 6.66 56.52 0.38 -6.07 16 25 C 0.10 1.96 4.49 -1.57 -0.01 1.96 16 26 C 0.09 1.35 4.98 -4.39 -0.02 1.32 16 27 N -0.31 -5.11 12.70 32.42 0.41 -4.70 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.50 7.76 -51.93 -0.40 0.10 16 34 H 0.10 0.70 7.72 -51.93 -0.40 0.30 16 35 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.07 0.98 8.04 -51.93 -0.42 0.57 16 38 H 0.09 0.83 7.82 -51.93 -0.41 0.42 16 39 H 0.10 1.39 7.14 -51.93 -0.37 1.02 16 40 H 0.08 1.24 7.19 -51.93 -0.37 0.86 16 41 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 42 H 0.07 1.58 7.91 -51.93 -0.41 1.17 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.06 8.02 -51.93 -0.42 0.65 16 45 H 0.04 0.57 7.59 -51.93 -0.39 0.18 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.04 0.70 5.80 -51.93 -0.30 0.40 16 48 H 0.07 1.51 5.05 -51.93 -0.26 1.25 16 49 H 0.07 0.81 6.49 -51.93 -0.34 0.47 16 50 H 0.07 0.86 7.72 -51.93 -0.40 0.46 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -36.94 390.47 -8.98 -45.92 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.31 Total: 1.73 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -2.63 Total: 8.75 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: 0.06 Total: -68.47 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.08 Total: 17.30 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.94 -8.98 -45.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197778097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.200 kcal (2) G-P(sol) polarization free energy of solvation -36.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds