Wall clock time and date at job start Tue Mar 31 2020 18:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33246 * 125.52865 * 2 1 4 4 C 1.30829 * 109.82736 * 179.97438 * 3 2 1 5 5 C 1.50711 * 125.95548 * 179.97438 * 4 3 2 6 6 N 1.34426 * 108.08403 * 0.02562 * 4 3 2 7 7 C 1.46498 * 126.82544 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47378 * 90.00070 * 7 6 4 9 9 C 1.52999 * 109.47303 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47056 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99981 * 354.22242 * 10 9 8 12 12 N 1.34777 * 120.00104 * 174.21652 * 10 9 8 13 13 C 1.48211 * 119.97347 * 174.83394 * 12 10 9 14 14 C 1.47140 * 110.33837 * 102.51654 * 13 12 10 15 15 C 1.53786 * 111.84325 * 58.30047 * 14 13 12 16 16 N 1.43464 * 107.96277 * 281.66674 * 15 14 13 17 17 C 1.36940 * 118.93682 * 273.60929 * 16 15 14 18 18 H 1.07996 * 120.00169 * 29.24688 * 17 16 15 19 19 C 1.38808 * 120.00152 * 209.24737 * 17 16 15 20 20 N 1.31616 * 120.00451 * 198.71733 * 19 17 16 21 21 Si 1.86807 * 119.99837 * 18.71327 * 19 17 16 22 22 H 1.48497 * 109.47086 * 271.94001 * 21 19 17 23 23 H 1.48500 * 109.47187 * 151.93865 * 21 19 17 24 24 H 1.48497 * 109.46776 * 31.93730 * 21 19 17 25 25 C 1.48853 * 122.12257 * 93.88295 * 16 15 14 26 26 C 1.43627 * 119.96487 * 354.86375 * 12 10 9 27 27 N 1.30716 * 125.52709 * 180.28665 * 2 1 3 28 28 H 1.09001 * 109.47373 * 90.02315 * 1 2 3 29 29 H 1.09003 * 109.47296 * 210.02528 * 1 2 3 30 30 H 1.08998 * 109.46736 * 330.02034 * 1 2 3 31 31 H 1.08994 * 109.46663 * 270.04118 * 5 4 3 32 32 H 1.08993 * 109.47025 * 30.04334 * 5 4 3 33 33 H 1.09004 * 109.46712 * 150.04357 * 5 4 3 34 34 H 1.09003 * 109.46752 * 329.99794 * 7 6 4 35 35 H 1.09001 * 109.46866 * 210.00022 * 7 6 4 36 36 H 1.09001 * 109.47191 * 59.99619 * 8 7 6 37 37 H 1.09007 * 109.46737 * 300.00080 * 8 7 6 38 38 H 1.08993 * 109.46838 * 59.99718 * 9 8 7 39 39 H 1.09001 * 109.46793 * 299.99861 * 9 8 7 40 40 H 1.09001 * 109.31886 * 342.25259 * 13 12 10 41 41 H 1.08996 * 109.18666 * 222.69284 * 13 12 10 42 42 H 1.09004 * 109.00770 * 297.69092 * 14 13 12 43 43 H 1.09006 * 108.94288 * 178.86736 * 14 13 12 44 44 H 1.08998 * 109.76739 * 162.04877 * 15 14 13 45 45 H 1.09002 * 109.81000 * 41.30470 * 15 14 13 46 46 H 0.97002 * 120.00759 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.47862 * 80.35177 * 25 16 15 48 48 H 1.09000 * 109.48132 * 200.38492 * 25 16 15 49 49 H 1.08994 * 108.87486 * 31.41741 * 26 12 10 50 50 H 1.09003 * 108.86932 * 149.96103 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5407 0.7303 0.0006 5 6 4.7228 1.6653 0.0002 6 7 3.5966 -0.6128 0.0003 7 6 4.8048 -1.4413 0.0003 8 6 5.2253 -1.7300 1.4427 9 6 6.4875 -2.5948 1.4426 10 6 6.9021 -2.8786 2.8633 11 8 6.3159 -2.3487 3.7834 12 7 7.9241 -3.7215 3.1116 13 6 8.4060 -3.9122 4.5001 14 6 7.9039 -5.1832 5.0456 15 6 8.3400 -6.3848 4.1907 16 7 7.4898 -6.4384 3.0364 17 6 6.2958 -7.1033 3.1233 18 1 5.7789 -7.1637 4.0696 19 6 5.7497 -7.6995 1.9950 20 7 4.4709 -8.0098 1.9682 21 14 6.8298 -8.0615 0.5145 22 1 6.8578 -6.8761 -0.3795 23 1 6.2815 -9.2266 -0.2253 24 1 8.2087 -8.3696 0.9713 25 6 7.8664 -5.7998 1.7457 26 6 8.5456 -4.4335 2.0301 27 7 2.2665 -1.0638 -0.0053 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 5.0075 1.8905 -1.0275 32 1 4.4557 2.5887 0.5140 33 1 5.5600 1.1927 0.5139 34 1 5.6078 -0.9127 -0.5135 35 1 4.6010 -2.3807 -0.5137 36 1 4.4223 -2.2585 1.9564 37 1 5.4290 -0.7906 1.9566 38 1 7.2902 -2.0659 0.9290 39 1 6.2842 -3.5342 0.9284 40 1 8.0528 -3.0887 5.1207 41 1 9.4959 -3.9242 4.5026 42 1 6.8149 -5.1490 5.0806 43 1 8.2875 -5.3099 6.0580 44 1 8.2371 -7.3041 4.7672 45 1 9.3770 -6.2595 3.8791 46 1 4.0893 -8.4268 1.1799 47 1 8.5579 -6.4481 1.2075 48 1 6.9717 -5.6426 1.1432 49 1 8.4963 -3.8207 1.1300 50 1 9.5920 -4.6097 2.2793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197778097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:25 Heat of formation + Delta-G solvation = 50.599089 kcal Electronic energy + Delta-G solvation = -30076.582003 eV Core-core repulsion = 26140.448256 eV Total energy + Delta-G solvation = -3936.133747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.15361 -41.29031 -38.85684 -36.84038 -35.99546 -34.61801 -33.96592 -33.45388 -33.05413 -30.51879 -29.57205 -29.18577 -27.83497 -26.86045 -25.18885 -24.27909 -22.78144 -21.75302 -21.61365 -21.44007 -19.93419 -18.94643 -18.02915 -17.77711 -17.42380 -16.98592 -16.93015 -16.77094 -16.03438 -15.62333 -15.44636 -15.35817 -15.02228 -14.63002 -14.60266 -14.36337 -14.23746 -14.08702 -13.82533 -13.73302 -13.69895 -13.44205 -13.28229 -13.15655 -12.99390 -12.93527 -12.74195 -12.57400 -12.53823 -12.28236 -11.93339 -11.92216 -11.74384 -11.59724 -11.50914 -11.05940 -10.85679 -10.74329 -10.67819 -10.34000 -9.57420 -8.81994 -8.15677 -5.52180 0.57487 1.28811 1.31854 1.43533 1.52909 1.65000 1.82563 2.18868 2.42642 3.06442 3.11373 3.38365 3.42207 3.52602 3.69776 3.85377 3.93825 3.97466 4.11869 4.17386 4.18929 4.30514 4.34917 4.39355 4.49679 4.51210 4.57787 4.63622 4.65823 4.69081 4.73068 4.78146 4.84039 4.87196 4.90986 4.94688 4.96080 5.00164 5.03557 5.13153 5.21192 5.33820 5.45879 5.47841 5.74751 5.89270 5.91341 6.13813 6.52717 7.00026 7.08200 7.24368 7.69581 7.99164 9.05267 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.003355 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.012107 B = 8343.905657 C = 9558.994158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.204 3.796 3 N -0.574 5.574 4 C 0.276 3.724 5 C -0.076 4.076 6 N -0.382 5.382 7 C 0.128 3.872 8 C -0.105 4.105 9 C -0.130 4.130 10 C 0.509 3.491 11 O -0.596 6.596 12 N -0.590 5.590 13 C 0.128 3.872 14 C -0.157 4.157 15 C 0.158 3.842 16 N -0.612 5.612 17 C -0.253 4.253 18 H 0.025 0.975 19 C -0.040 4.040 20 N -0.967 5.967 21 Si 0.961 3.039 22 H -0.255 1.255 23 H -0.321 1.321 24 H -0.255 1.255 25 C 0.091 3.909 26 C 0.097 3.903 27 N -0.366 5.366 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.153 0.847 35 H 0.093 0.907 36 H 0.024 0.976 37 H 0.077 0.923 38 H 0.153 0.847 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.012 0.988 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.081 0.919 46 H 0.259 0.741 47 H 0.052 0.948 48 H 0.046 0.954 49 H 0.115 0.885 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.537 18.927 -7.757 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.078 4.078 3 N -0.304 5.304 4 C 0.001 3.999 5 C -0.135 4.135 6 N -0.172 5.172 7 C 0.007 3.993 8 C -0.144 4.144 9 C -0.170 4.170 10 C 0.299 3.701 11 O -0.478 6.478 12 N -0.321 5.321 13 C 0.007 3.993 14 C -0.198 4.198 15 C 0.032 3.968 16 N -0.335 5.335 17 C -0.383 4.383 18 H 0.043 0.957 19 C -0.234 4.234 20 N -0.613 5.613 21 Si 0.788 3.212 22 H -0.180 1.180 23 H -0.251 1.251 24 H -0.179 1.179 25 C -0.034 4.034 26 C -0.028 4.028 27 N -0.195 5.195 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.170 0.830 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.096 0.904 38 H 0.170 0.830 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.127 0.873 42 H 0.031 0.969 43 H 0.102 0.898 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.133 0.867 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.872 18.681 -7.354 22.831 hybrid contribution -0.771 -1.273 0.016 1.489 sum 10.101 17.407 -7.339 21.422 Atomic orbital electron populations 1.20207 0.82012 1.04540 1.04739 1.24964 0.99748 0.85621 0.97436 1.70354 1.00941 1.31292 1.27843 1.25340 0.96186 0.84123 0.94264 1.20684 0.89867 0.96609 1.06327 1.50471 1.05672 1.06232 1.54849 1.22101 0.82862 0.96730 0.97621 1.21504 0.96647 1.00569 0.95728 1.21631 0.99517 1.02488 0.93326 1.21164 0.78569 0.78124 0.92270 1.90640 1.54128 1.54562 1.48455 1.47539 1.34166 1.41522 1.08833 1.20665 1.00029 0.96755 0.81898 1.21668 0.99531 0.97802 1.00763 1.20529 0.93814 0.95200 0.87263 1.44006 1.19092 1.60844 1.09575 1.18701 0.96793 1.27248 0.95604 0.95723 1.26118 0.96805 0.98626 1.01841 1.70032 1.13143 1.47119 1.30989 0.85783 0.79202 0.77150 0.79018 1.17986 1.25068 1.17901 1.22881 0.98522 0.94272 0.87748 1.21986 0.97893 0.91958 0.91006 1.78033 0.88490 1.24225 1.28732 0.88380 0.90065 0.88467 0.86486 0.87949 0.87721 0.82984 0.88821 0.95683 0.90406 0.82972 0.88911 0.91589 0.87260 0.96924 0.89804 0.94473 0.90114 0.93203 0.93041 0.93558 0.86668 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.21 10.51 71.23 0.75 -0.46 16 2 C 0.20 6.20 8.14 138.63 1.13 7.33 16 3 N -0.57 -16.65 11.19 -179.72 -2.01 -18.66 16 4 C 0.28 6.62 7.98 138.23 1.10 7.72 16 5 C -0.08 -0.88 10.01 71.24 0.71 -0.16 16 6 N -0.38 -10.41 3.64 -338.49 -1.23 -11.64 16 7 C 0.13 2.60 6.13 86.38 0.53 3.12 16 8 C -0.11 -2.74 4.85 30.59 0.15 -2.59 16 9 C -0.13 -2.98 4.12 29.85 0.12 -2.86 16 10 C 0.51 16.60 7.65 87.66 0.67 17.27 16 11 O -0.60 -24.98 15.46 -3.03 -0.05 -25.02 16 12 N -0.59 -17.02 2.46 -830.50 -2.04 -19.06 16 13 C 0.13 3.54 5.67 84.23 0.48 4.02 16 14 C -0.16 -5.30 5.64 29.04 0.16 -5.14 16 15 C 0.16 5.63 5.63 87.21 0.49 6.12 16 16 N -0.61 -26.74 2.28 -697.43 -1.59 -28.33 16 17 C -0.25 -14.48 9.67 84.03 0.81 -13.66 16 18 H 0.02 1.65 8.06 -2.91 -0.02 1.62 16 19 C -0.04 -2.33 5.20 84.86 0.44 -1.89 16 20 N -0.97 -62.42 13.97 21.65 0.30 -62.11 16 21 Si 0.96 44.10 23.99 68.60 1.65 45.75 16 22 H -0.25 -10.23 6.57 99.48 0.65 -9.57 16 23 H -0.32 -15.57 7.11 99.48 0.71 -14.86 16 24 H -0.25 -10.76 6.66 99.48 0.66 -10.10 16 25 C 0.09 3.17 4.49 86.68 0.39 3.55 16 26 C 0.10 2.23 4.98 87.67 0.44 2.66 16 27 N -0.37 -12.51 12.70 -51.33 -0.65 -13.16 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.12 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 0.79 7.76 -2.38 -0.02 0.77 16 34 H 0.15 1.40 7.72 -2.39 -0.02 1.38 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.96 8.04 -2.38 -0.02 1.94 16 38 H 0.15 1.70 7.82 -2.39 -0.02 1.69 16 39 H 0.09 2.35 7.14 -2.39 -0.02 2.34 16 40 H 0.07 2.02 7.19 -2.39 -0.02 2.00 16 41 H 0.11 2.06 8.05 -2.39 -0.02 2.04 16 42 H 0.01 0.55 7.91 -2.38 -0.02 0.53 16 43 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 44 H 0.04 1.43 8.02 -2.39 -0.02 1.41 16 45 H 0.08 2.19 7.59 -2.39 -0.02 2.17 16 46 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 47 H 0.05 1.69 5.80 -2.39 -0.01 1.67 16 48 H 0.05 1.85 5.05 -2.39 -0.01 1.83 16 49 H 0.12 1.74 6.49 -2.39 -0.02 1.72 16 50 H 0.11 1.79 7.72 -2.39 -0.02 1.77 16 Total: -1.00 -92.94 390.47 3.58 -89.36 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.83 Total: 17.84 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 8.38 Total: 25.04 kcal Atomic # 7 Polarization: -145.74 SS G_CDS: -7.22 Total: -152.96 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.65 Total: 45.75 kcal Total: -92.94 3.58 -89.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197778097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.957 kcal (2) G-P(sol) polarization free energy of solvation -92.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds