Wall clock time and date at job start Tue Mar 31 2020 20:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 C 1.52999 * 109.46903 * 239.99542 * 2 1 3 5 5 N 1.46504 * 109.46728 * 120.00057 * 2 1 3 6 6 C 1.34809 * 126.59665 * 75.00107 * 5 2 1 7 7 C 1.36600 * 106.84171 * 180.02562 * 6 5 2 8 8 C 1.47522 * 125.77206 * 180.02562 * 7 6 5 9 9 O 1.21599 * 119.99840 * 353.27133 * 8 7 6 10 10 N 1.34772 * 119.99978 * 173.27688 * 8 7 6 11 11 C 1.46921 * 120.63296 * 3.78296 * 10 8 7 12 12 C 1.52758 * 109.01408 * 233.58723 * 11 10 8 13 13 C 1.53046 * 109.38026 * 305.58706 * 12 11 10 14 14 C 1.52999 * 109.44943 * 181.24992 * 13 12 11 15 15 N 1.46503 * 109.46934 * 64.93867 * 14 13 12 16 16 C 1.36934 * 119.99967 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00036 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99924 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47273 * 89.99717 * 20 18 16 22 22 H 1.48500 * 109.46883 * 209.99627 * 20 18 16 23 23 H 1.48500 * 109.46912 * 329.99605 * 20 18 16 24 24 C 1.53048 * 109.53651 * 61.23771 * 13 12 11 25 25 C 1.46930 * 120.63181 * 184.06656 * 10 8 7 26 26 N 1.34401 * 108.45478 * 359.97438 * 7 6 5 27 27 N 1.28755 * 109.52635 * 0.02562 * 26 7 6 28 28 H 1.08997 * 109.46881 * 300.00416 * 1 2 3 29 29 H 1.09002 * 109.46681 * 59.99876 * 1 2 3 30 30 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46666 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46746 * 299.99526 * 3 2 1 33 33 H 1.08998 * 109.46622 * 59.99861 * 3 2 1 34 34 H 1.09000 * 109.47661 * 300.00083 * 4 2 1 35 35 H 1.09002 * 109.46978 * 60.00763 * 4 2 1 36 36 H 1.09007 * 109.46772 * 180.02562 * 4 2 1 37 37 H 1.07998 * 126.58246 * 0.05117 * 6 5 2 38 38 H 1.09008 * 109.58702 * 353.42527 * 11 10 8 39 39 H 1.09004 * 109.58735 * 113.84452 * 11 10 8 40 40 H 1.08994 * 109.56958 * 185.55520 * 12 11 10 41 41 H 1.08995 * 109.36012 * 65.49378 * 12 11 10 42 42 H 1.09001 * 109.46066 * 301.22287 * 13 12 11 43 43 H 1.08996 * 109.46903 * 184.94072 * 14 13 12 44 44 H 1.08999 * 109.47257 * 304.93825 * 14 13 12 45 45 H 0.96997 * 120.00117 * 0.02562 * 15 14 13 46 46 H 0.96991 * 119.99549 * 180.02562 * 19 18 16 47 47 H 1.08996 * 109.49704 * 178.68230 * 24 13 12 48 48 H 1.09000 * 109.49315 * 58.58889 * 24 13 12 49 49 H 1.08996 * 109.58835 * 246.15976 * 25 10 8 50 50 H 1.09005 * 109.58353 * 6.43554 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0221 -2.0216 1.4106 7 6 2.5626 -2.2215 2.6490 8 6 2.7645 -3.5293 3.3010 9 8 2.3283 -4.5400 2.7843 10 7 3.4323 -3.6040 4.4693 11 6 3.8931 -2.3848 5.1474 12 6 5.3898 -2.5066 5.4276 13 6 5.6576 -3.7978 6.2044 14 6 7.1522 -3.9059 6.5131 15 7 7.5443 -2.8204 7.4154 16 6 8.8440 -2.7130 7.8331 17 1 9.5801 -3.4283 7.4969 18 6 9.2154 -1.6848 8.6885 19 7 8.3184 -0.8128 9.0978 20 14 10.9885 -1.5378 9.2577 21 1 11.7449 -0.6851 8.3059 22 1 11.0252 -0.9237 10.6093 23 1 11.6049 -2.8878 9.3104 24 6 5.2222 -5.0004 5.3640 25 6 3.7187 -4.9065 5.0859 26 7 2.8805 -1.0252 3.1726 27 7 2.5714 -0.0944 2.3384 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 1.6664 -2.7837 0.7330 38 1 3.7115 -1.5204 4.5085 39 1 3.3565 -2.2651 6.0886 40 1 5.7216 -1.6520 6.0170 41 1 5.9334 -2.5309 4.4832 42 1 5.0941 -3.7837 7.1374 43 1 7.3565 -4.8653 6.9884 44 1 7.7210 -3.8312 5.5862 45 1 6.8831 -2.1783 7.7177 46 1 8.5780 -0.0942 9.6952 47 1 5.4347 -5.9206 5.9082 48 1 5.7675 -5.0012 4.4202 49 1 3.1676 -4.9967 6.0220 50 1 3.4198 -5.7056 4.4075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205430531.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:02 Heat of formation + Delta-G solvation = 76.147414 kcal Electronic energy + Delta-G solvation = -29365.499746 eV Core-core repulsion = 25430.473857 eV Total energy + Delta-G solvation = -3935.025889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55758 -39.87915 -37.83621 -37.53043 -34.85209 -32.93117 -32.26538 -31.50631 -30.40157 -30.18811 -28.14784 -28.06449 -26.68114 -24.50359 -24.07835 -22.89973 -22.85734 -21.42610 -20.80964 -20.09758 -18.98970 -17.47347 -17.05122 -16.54528 -16.36775 -15.99594 -15.27138 -15.03468 -14.75631 -14.65089 -14.38780 -14.15200 -13.91010 -13.69451 -13.51732 -13.22796 -13.17162 -13.08019 -12.85007 -12.77734 -12.44130 -12.43038 -12.34845 -12.17953 -12.00242 -11.65733 -11.59512 -11.23968 -10.97174 -10.82189 -10.76705 -10.60224 -10.31387 -10.20352 -10.16675 -9.95829 -9.57307 -9.49044 -9.47918 -8.79748 -8.47872 -6.83368 -5.69686 -2.97415 0.93746 1.56798 1.67946 2.99538 3.24605 3.47999 3.52867 3.54686 3.74058 3.97786 4.02275 4.13860 4.39088 4.65015 4.66001 4.79415 4.81656 4.89518 4.97809 4.99485 5.09659 5.15945 5.16303 5.17016 5.26357 5.35031 5.35741 5.44247 5.49165 5.57936 5.64460 5.68083 5.81660 5.84448 6.09835 6.11828 6.13455 6.17432 6.31103 6.34415 6.49675 6.61581 6.69688 6.79555 6.94762 7.03915 7.43651 7.76519 7.79042 8.15619 8.49812 9.60663 10.20155 10.55015 11.53386 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.002454 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.208403 B =11406.843305 C =12748.043058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 C -0.150 4.150 4 C -0.163 4.163 5 N -0.349 5.349 6 C 0.091 3.909 7 C -0.093 4.093 8 C 0.602 3.398 9 O -0.552 6.552 10 N -0.588 5.588 11 C 0.066 3.934 12 C -0.120 4.120 13 C -0.096 4.096 14 C 0.159 3.841 15 N -0.732 5.732 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.125 4.125 25 C 0.113 3.887 26 N -0.202 5.202 27 N -0.061 5.061 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.200 0.800 38 H 0.141 0.859 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.482 0.028 -22.691 29.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.087 3.913 3 C -0.208 4.208 4 C -0.222 4.222 5 N -0.136 5.136 6 C -0.066 4.066 7 C -0.232 4.232 8 C 0.388 3.612 9 O -0.430 6.430 10 N -0.319 5.319 11 C -0.057 4.057 12 C -0.158 4.158 13 C -0.115 4.115 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.163 4.163 25 C -0.009 4.009 26 N -0.074 5.074 27 N -0.039 5.039 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.217 0.783 38 H 0.157 0.843 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.161 0.823 -22.297 29.410 hybrid contribution 0.616 -0.523 0.053 0.810 sum -18.545 0.299 -22.244 28.962 Atomic orbital electron populations 1.22291 0.91830 1.03675 1.04118 1.21117 0.95196 0.94230 0.80803 1.22006 1.02746 0.92110 1.03896 1.22308 1.02837 1.01230 0.95776 1.50833 1.42067 1.05205 1.15458 1.23178 0.98507 0.86968 0.97902 1.21455 1.12309 0.93688 0.95776 1.16812 0.78255 0.85721 0.80385 1.90766 1.51770 1.35469 1.65002 1.47960 1.54043 1.08734 1.21162 1.22885 0.95424 0.88192 0.99158 1.21793 0.94355 0.99067 1.00611 1.21341 0.97994 0.94024 0.98110 1.20665 0.91034 0.91979 0.93225 1.42382 1.08616 1.31375 1.55216 1.19237 0.86400 1.09089 1.22048 0.91322 1.24727 0.97639 0.98112 1.00656 1.69658 1.32473 1.17608 1.38540 0.86201 0.84782 0.77470 0.77827 1.21809 1.21821 1.20847 1.21903 0.94622 0.99112 1.00706 1.21677 0.96276 0.84816 0.98170 1.74210 1.13315 0.98229 1.21688 1.82035 1.14810 1.17423 0.89655 0.91141 0.89614 0.91376 0.91064 0.90115 0.90508 0.91151 0.89357 0.91021 0.78310 0.84277 0.91652 0.89459 0.92253 0.91036 0.96493 0.96541 0.78209 0.93582 0.90643 0.91669 0.91332 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 8.74 37.16 0.32 -0.31 16 2 C 0.17 0.91 1.25 -131.81 -0.16 0.75 16 3 C -0.15 -0.79 8.12 37.16 0.30 -0.48 16 4 C -0.16 -0.59 8.30 37.16 0.31 -0.28 16 5 N -0.35 -3.17 3.44 -48.35 -0.17 -3.34 16 6 C 0.09 0.89 10.44 -16.84 -0.18 0.71 16 7 C -0.09 -1.22 6.77 -83.55 -0.57 -1.78 16 8 C 0.60 8.87 7.69 -12.48 -0.10 8.78 16 9 O -0.55 -8.94 16.30 5.28 0.09 -8.86 16 10 N -0.59 -8.53 2.98 -174.26 -0.52 -9.05 16 11 C 0.07 0.99 6.28 -3.94 -0.02 0.96 16 12 C -0.12 -2.02 5.23 -26.83 -0.14 -2.16 16 13 C -0.10 -1.61 2.19 -90.57 -0.20 -1.81 16 14 C 0.16 3.31 5.65 -4.04 -0.02 3.29 16 15 N -0.73 -18.99 5.32 -59.91 -0.32 -19.30 16 16 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 17 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 18 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 19 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 20 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.12 -1.75 5.36 -26.61 -0.14 -1.89 16 25 C 0.11 1.51 6.42 -3.71 -0.02 1.48 16 26 N -0.20 -2.81 8.64 32.85 0.28 -2.53 16 27 N -0.06 -0.76 12.91 60.35 0.78 0.02 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 34 H 0.07 0.22 7.44 -51.93 -0.39 -0.17 16 35 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 36 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 37 H 0.20 1.35 7.63 -52.49 -0.40 0.95 16 38 H 0.14 2.11 3.62 -129.76 -0.47 1.64 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.66 7.15 -51.93 -0.37 1.29 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.38 10.38 6.84 -40.82 -0.28 10.10 16 46 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.09 1.18 7.03 -51.93 -0.36 0.82 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -34.59 397.48 -7.61 -42.19 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.58 Total: 5.27 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.87 Total: -0.25 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.78 Total: -62.23 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.59 -7.61 -42.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205430531.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.341 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds