Wall clock time and date at job start Tue Mar 31 2020 20:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 C 1.52999 * 109.46903 * 239.99542 * 2 1 3 5 5 N 1.46504 * 109.46728 * 120.00057 * 2 1 3 6 6 C 1.34809 * 126.59665 * 75.00107 * 5 2 1 7 7 C 1.36600 * 106.84171 * 180.02562 * 6 5 2 8 8 C 1.47522 * 125.77206 * 180.02562 * 7 6 5 9 9 O 1.21599 * 119.99840 * 353.27133 * 8 7 6 10 10 N 1.34772 * 119.99978 * 173.27688 * 8 7 6 11 11 C 1.46921 * 120.63296 * 3.78296 * 10 8 7 12 12 C 1.52758 * 109.01408 * 233.58723 * 11 10 8 13 13 C 1.53046 * 109.38026 * 305.58706 * 12 11 10 14 14 C 1.52999 * 109.44943 * 181.24992 * 13 12 11 15 15 N 1.46503 * 109.46934 * 64.93867 * 14 13 12 16 16 C 1.36934 * 119.99967 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00036 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99924 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47273 * 89.99717 * 20 18 16 22 22 H 1.48500 * 109.46883 * 209.99627 * 20 18 16 23 23 H 1.48500 * 109.46912 * 329.99605 * 20 18 16 24 24 C 1.53048 * 109.53651 * 61.23771 * 13 12 11 25 25 C 1.46930 * 120.63181 * 184.06656 * 10 8 7 26 26 N 1.34401 * 108.45478 * 359.97438 * 7 6 5 27 27 N 1.28755 * 109.52635 * 0.02562 * 26 7 6 28 28 H 1.08997 * 109.46881 * 300.00416 * 1 2 3 29 29 H 1.09002 * 109.46681 * 59.99876 * 1 2 3 30 30 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46666 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46746 * 299.99526 * 3 2 1 33 33 H 1.08998 * 109.46622 * 59.99861 * 3 2 1 34 34 H 1.09000 * 109.47661 * 300.00083 * 4 2 1 35 35 H 1.09002 * 109.46978 * 60.00763 * 4 2 1 36 36 H 1.09007 * 109.46772 * 180.02562 * 4 2 1 37 37 H 1.07998 * 126.58246 * 0.05117 * 6 5 2 38 38 H 1.09008 * 109.58702 * 353.42527 * 11 10 8 39 39 H 1.09004 * 109.58735 * 113.84452 * 11 10 8 40 40 H 1.08994 * 109.56958 * 185.55520 * 12 11 10 41 41 H 1.08995 * 109.36012 * 65.49378 * 12 11 10 42 42 H 1.09001 * 109.46066 * 301.22287 * 13 12 11 43 43 H 1.08996 * 109.46903 * 184.94072 * 14 13 12 44 44 H 1.08999 * 109.47257 * 304.93825 * 14 13 12 45 45 H 0.96997 * 120.00117 * 0.02562 * 15 14 13 46 46 H 0.96991 * 119.99549 * 180.02562 * 19 18 16 47 47 H 1.08996 * 109.49704 * 178.68230 * 24 13 12 48 48 H 1.09000 * 109.49315 * 58.58889 * 24 13 12 49 49 H 1.08996 * 109.58835 * 246.15976 * 25 10 8 50 50 H 1.09005 * 109.58353 * 6.43554 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0221 -2.0216 1.4106 7 6 2.5626 -2.2215 2.6490 8 6 2.7645 -3.5293 3.3010 9 8 2.3283 -4.5400 2.7843 10 7 3.4323 -3.6040 4.4693 11 6 3.8931 -2.3848 5.1474 12 6 5.3898 -2.5066 5.4276 13 6 5.6576 -3.7978 6.2044 14 6 7.1522 -3.9059 6.5131 15 7 7.5443 -2.8204 7.4154 16 6 8.8440 -2.7130 7.8331 17 1 9.5801 -3.4283 7.4969 18 6 9.2154 -1.6848 8.6885 19 7 8.3184 -0.8128 9.0978 20 14 10.9885 -1.5378 9.2577 21 1 11.7449 -0.6851 8.3059 22 1 11.0252 -0.9237 10.6093 23 1 11.6049 -2.8878 9.3104 24 6 5.2222 -5.0004 5.3640 25 6 3.7187 -4.9065 5.0859 26 7 2.8805 -1.0252 3.1726 27 7 2.5714 -0.0944 2.3384 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 1.6664 -2.7837 0.7330 38 1 3.7115 -1.5204 4.5085 39 1 3.3565 -2.2651 6.0886 40 1 5.7216 -1.6520 6.0170 41 1 5.9334 -2.5309 4.4832 42 1 5.0941 -3.7837 7.1374 43 1 7.3565 -4.8653 6.9884 44 1 7.7210 -3.8312 5.5862 45 1 6.8831 -2.1783 7.7177 46 1 8.5780 -0.0942 9.6952 47 1 5.4347 -5.9206 5.9082 48 1 5.7675 -5.0012 4.4202 49 1 3.1676 -4.9967 6.0220 50 1 3.4198 -5.7056 4.4075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205430531.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:00 Heat of formation + Delta-G solvation = 53.689184 kcal Electronic energy + Delta-G solvation = -29366.473608 eV Core-core repulsion = 25430.473857 eV Total energy + Delta-G solvation = -3935.999751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -43.41350 -41.02180 -38.90240 -38.32778 -36.55868 -34.53208 -33.16452 -32.69838 -31.97682 -31.43219 -28.58425 -28.41354 -28.17951 -25.87905 -25.14004 -24.36215 -24.05620 -22.76666 -21.72264 -21.25249 -20.09312 -19.12142 -18.21963 -17.57942 -17.19463 -17.01806 -16.69462 -16.17935 -15.95339 -15.59028 -15.35507 -15.31250 -15.20066 -15.02559 -14.93827 -14.47037 -14.15410 -14.01260 -13.63203 -13.62246 -13.38918 -13.21444 -13.16794 -13.06531 -12.95001 -12.77605 -12.74218 -12.47297 -12.43611 -12.19248 -12.04215 -11.95723 -11.93152 -11.67835 -11.38432 -11.31420 -11.29947 -10.95905 -10.66998 -10.40294 -9.65359 -8.97666 -7.93799 -5.22277 0.14211 0.55649 1.02470 1.46667 1.48845 1.57287 1.92115 2.18005 2.56653 3.05072 3.21919 3.39207 3.57927 3.65034 3.76587 3.77603 3.86090 3.89362 3.95048 4.14663 4.18794 4.25143 4.32479 4.39658 4.57384 4.59074 4.60750 4.61252 4.67522 4.70617 4.77071 4.79474 4.80315 4.87894 4.95010 5.02267 5.07836 5.08415 5.17530 5.19864 5.22042 5.27813 5.37350 5.47515 5.53401 5.54596 5.68854 6.28460 6.29508 6.82326 7.07935 7.34774 8.11600 8.35607 9.29826 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.002454 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.208403 B =11406.843305 C =12748.043058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 C -0.149 4.149 4 C -0.161 4.161 5 N -0.335 5.335 6 C 0.110 3.890 7 C -0.121 4.121 8 C 0.602 3.398 9 O -0.568 6.568 10 N -0.592 5.592 11 C 0.076 3.924 12 C -0.111 4.111 13 C -0.085 4.085 14 C 0.158 3.842 15 N -0.743 5.743 16 C -0.246 4.246 17 H 0.073 0.927 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.288 1.288 22 H -0.294 1.294 23 H -0.270 1.270 24 C -0.114 4.114 25 C 0.114 3.886 26 N -0.228 5.228 27 N -0.085 5.085 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.058 0.942 37 H 0.232 0.768 38 H 0.142 0.858 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.022 0.978 44 H 0.013 0.987 45 H 0.375 0.625 46 H 0.251 0.749 47 H 0.094 0.906 48 H 0.062 0.938 49 H 0.081 0.919 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.374 -0.886 -24.826 32.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.078 3.922 3 C -0.207 4.207 4 C -0.219 4.219 5 N -0.121 5.121 6 C -0.048 4.048 7 C -0.261 4.261 8 C 0.390 3.610 9 O -0.448 6.448 10 N -0.323 5.323 11 C -0.047 4.047 12 C -0.149 4.149 13 C -0.104 4.104 14 C 0.032 3.968 15 N -0.386 5.386 16 C -0.378 4.378 17 H 0.091 0.909 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.803 3.197 21 H -0.215 1.215 22 H -0.220 1.220 23 H -0.195 1.195 24 C -0.153 4.153 25 C -0.008 4.008 26 N -0.100 5.100 27 N -0.064 5.064 28 H 0.073 0.927 29 H 0.132 0.868 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.133 0.867 36 H 0.077 0.923 37 H 0.249 0.751 38 H 0.158 0.842 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.040 0.960 44 H 0.031 0.969 45 H 0.207 0.793 46 H 0.060 0.940 47 H 0.112 0.888 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.054 -0.101 -24.464 31.633 hybrid contribution 0.837 -0.224 0.582 1.044 sum -19.217 -0.325 -23.882 30.655 Atomic orbital electron populations 1.22310 0.90198 1.04277 1.04732 1.21623 0.96374 0.94190 0.80050 1.22035 1.01722 0.92346 1.04593 1.22352 1.02030 1.01991 0.95487 1.51202 1.40367 1.05178 1.15383 1.23617 0.96555 0.87654 0.97015 1.21479 1.14407 0.92959 0.97239 1.17000 0.77746 0.86176 0.80125 1.90743 1.52554 1.36158 1.65351 1.48004 1.54096 1.08803 1.21354 1.22730 0.93759 0.88802 0.99414 1.21644 0.95765 0.98033 0.99503 1.21231 0.95197 0.95436 0.98567 1.20816 0.93617 0.90506 0.91909 1.42584 1.07733 1.32425 1.55887 1.19637 0.87643 1.08904 1.21580 0.90882 1.25574 1.01838 0.98110 1.01340 1.69819 1.34457 1.18265 1.39418 0.85135 0.79867 0.77825 0.76907 1.21474 1.22035 1.19450 1.21820 0.95123 0.98255 1.00072 1.21739 0.95669 0.84514 0.98861 1.74106 1.14282 0.98769 1.22795 1.81954 1.15957 1.17621 0.90868 0.92726 0.86805 0.90781 0.92666 0.87093 0.92134 0.90104 0.86663 0.92330 0.75135 0.84209 0.91402 0.92302 0.93138 0.91336 0.95979 0.96935 0.79265 0.93993 0.88767 0.91958 0.90083 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 8.74 71.98 0.63 -0.21 16 2 C 0.16 1.40 1.25 3.60 0.00 1.41 16 3 C -0.15 -1.39 8.12 71.98 0.58 -0.81 16 4 C -0.16 -0.70 8.30 71.98 0.60 -0.10 16 5 N -0.34 -5.77 3.44 -306.89 -1.06 -6.82 16 6 C 0.11 1.97 10.44 83.85 0.88 2.85 16 7 C -0.12 -3.13 6.77 40.82 0.28 -2.85 16 8 C 0.60 17.38 7.69 86.69 0.67 18.05 16 9 O -0.57 -17.72 16.30 -4.03 -0.07 -17.79 16 10 N -0.59 -16.91 2.98 -823.51 -2.45 -19.36 16 11 C 0.08 2.31 6.28 86.22 0.54 2.86 16 12 C -0.11 -3.85 5.23 30.53 0.16 -3.69 16 13 C -0.09 -2.88 2.19 -10.76 -0.02 -2.90 16 14 C 0.16 6.62 5.65 86.38 0.49 7.11 16 15 N -0.74 -39.32 5.32 -343.45 -1.83 -41.14 16 16 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 17 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 18 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 19 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 20 Si 0.97 47.39 29.55 68.60 2.03 49.42 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 24 C -0.11 -3.05 5.36 30.67 0.16 -2.89 16 25 C 0.11 2.89 6.42 86.36 0.55 3.44 16 26 N -0.23 -6.48 8.64 -49.99 -0.43 -6.92 16 27 N -0.09 -2.17 12.91 37.02 0.48 -1.69 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.11 -0.01 8.14 -2.39 -0.02 -0.02 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.77 8.06 -2.39 -0.02 0.75 16 34 H 0.08 0.21 7.44 -2.39 -0.02 0.19 16 35 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 37 H 0.23 2.46 7.63 -2.91 -0.02 2.44 16 38 H 0.14 4.41 3.62 -103.09 -0.37 4.03 16 39 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.06 2.37 7.15 -2.39 -0.02 2.35 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 45 H 0.37 20.94 6.84 -92.71 -0.63 20.31 16 46 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.10 2.37 7.03 -2.38 -0.02 2.35 16 Total: -1.00 -75.78 397.48 3.71 -72.06 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.07 Total: 27.97 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 6.82 Total: 4.81 kcal Atomic # 7 Polarization: -131.47 SS G_CDS: -5.01 Total: -136.47 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.07 Total: -17.79 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -75.78 3.71 -72.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205430531.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.753 kcal (2) G-P(sol) polarization free energy of solvation -75.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds