Wall clock time and date at job start Tue Mar 31 2020 18:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36590 * 126.57874 * 2 1 4 4 C 1.47526 * 125.77500 * 0.02562 * 3 2 1 5 5 O 1.21599 * 119.99492 * 6.50376 * 4 3 2 6 6 N 1.34773 * 120.00441 * 186.51262 * 4 3 2 7 7 C 1.46924 * 120.62737 * 7.03027 * 6 4 3 8 8 C 1.53626 * 108.54448 * 126.37149 * 7 6 4 9 9 C 1.53043 * 109.24180 * 54.85235 * 8 7 6 10 10 C 1.52998 * 109.44989 * 178.49696 * 9 8 7 11 11 N 1.46500 * 109.47314 * 295.06307 * 10 9 8 12 12 C 1.36937 * 119.99894 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00315 * 359.97438 * 12 11 10 14 14 C 1.38819 * 119.99539 * 180.02562 * 12 11 10 15 15 N 1.31614 * 120.00330 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99600 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47191 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47325 * 119.99781 * 16 14 12 19 19 H 1.48498 * 109.46838 * 239.99864 * 16 14 12 20 20 C 1.53042 * 109.54025 * 298.51655 * 9 8 7 21 21 C 1.46926 * 120.63410 * 187.30918 * 6 4 3 22 22 N 1.34404 * 108.46080 * 180.23428 * 3 2 1 23 23 N 1.28768 * 109.51919 * 359.77267 * 22 3 2 24 24 N 1.34806 * 126.57811 * 179.84817 * 2 1 3 25 25 C 1.46496 * 126.59941 * 0.03542 * 24 2 1 26 26 C 1.53001 * 109.47656 * 239.71360 * 25 24 2 27 27 C 1.52999 * 109.47321 * 119.71126 * 25 24 2 28 28 H 1.09000 * 109.47269 * 270.15243 * 1 2 3 29 29 H 1.08997 * 109.47222 * 30.15276 * 1 2 3 30 30 H 1.09001 * 109.47417 * 150.15265 * 1 2 3 31 31 H 1.09003 * 109.58703 * 246.19963 * 7 6 4 32 32 H 1.09000 * 109.59177 * 6.62885 * 7 6 4 33 33 H 1.09002 * 109.63509 * 294.86588 * 8 7 6 34 34 H 1.08996 * 109.43218 * 174.72176 * 8 7 6 35 35 H 1.09003 * 109.45867 * 58.53494 * 9 8 7 36 36 H 1.09006 * 109.46970 * 55.06575 * 10 9 8 37 37 H 1.08999 * 109.47488 * 175.06258 * 10 9 8 38 38 H 0.96994 * 119.99978 * 0.02562 * 11 10 9 39 39 H 0.96994 * 120.00011 * 179.97438 * 15 14 12 40 40 H 1.09009 * 109.49208 * 301.41428 * 20 9 8 41 41 H 1.08999 * 109.49506 * 181.31911 * 20 9 8 42 42 H 1.09004 * 109.58217 * 353.37578 * 21 6 4 43 43 H 1.08999 * 109.58281 * 113.64947 * 21 6 4 44 44 H 1.09002 * 109.46945 * 359.71580 * 25 24 2 45 45 H 1.09002 * 109.46842 * 59.99969 * 26 25 24 46 46 H 1.08998 * 109.47673 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.47123 * 300.00111 * 26 25 24 48 48 H 1.09002 * 109.46740 * 60.00329 * 27 25 24 49 49 H 1.08998 * 109.47008 * 180.02562 * 27 25 24 50 50 H 1.08998 * 109.47068 * 300.00102 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6924 2.7648 0.1203 6 7 2.7744 3.4965 -0.1319 7 6 4.1813 3.1967 -0.4309 8 6 4.5985 3.9986 -1.6731 9 6 4.3091 5.4826 -1.4360 10 6 4.7573 6.2903 -2.6557 11 7 6.2125 6.1953 -2.7964 12 6 6.8445 6.8417 -3.8249 13 1 6.2703 7.4211 -4.5326 14 6 8.2233 6.7512 -3.9585 15 7 8.9231 6.0446 -3.0964 16 14 9.0856 7.6335 -5.3612 17 1 8.0814 8.3540 -6.1845 18 1 10.0624 8.6057 -4.8083 19 1 9.7982 6.6418 -6.2061 20 6 2.8078 5.6825 -1.2157 21 6 2.3694 4.9000 0.0260 22 7 3.5984 0.6789 -0.0052 23 7 3.6299 -0.6084 -0.0036 24 7 2.3103 -1.0825 0.0029 25 6 1.8864 -2.4848 0.0059 26 6 2.4344 -3.1808 1.2533 27 6 2.4237 -3.1828 -1.2451 28 1 -0.3634 0.0027 1.0276 29 1 -0.3633 0.8886 -0.5162 30 1 -0.3634 -0.8913 -0.5115 31 1 4.8039 3.4815 0.4173 32 1 4.2940 2.1305 -0.6278 33 1 4.0347 3.6519 -2.5392 34 1 5.6645 3.8601 -1.8530 35 1 4.8538 5.8226 -0.5552 36 1 4.2790 5.8924 -3.5507 37 1 4.4724 7.3342 -2.5250 38 1 6.7281 5.6739 -2.1615 39 1 9.8864 5.9811 -3.1900 40 1 2.2610 5.3198 -2.0862 41 1 2.5995 6.7425 -1.0702 42 1 1.2859 4.9579 0.1308 43 1 2.8451 5.3200 0.9122 44 1 0.7975 -2.5351 0.0105 45 1 2.0515 -2.6836 2.1445 46 1 2.1186 -4.2240 1.2558 47 1 3.5233 -3.1305 1.2486 48 1 3.5126 -3.1325 -1.2498 49 1 2.1079 -4.2260 -1.2431 50 1 2.0332 -2.6870 -2.1338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206699426.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:00 Heat of formation + Delta-G solvation = 69.416922 kcal Electronic energy + Delta-G solvation = -29482.305218 eV Core-core repulsion = 25546.987474 eV Total energy + Delta-G solvation = -3935.317745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.54704 -39.83682 -37.57649 -36.80658 -34.87237 -33.32270 -32.80296 -31.60380 -30.52960 -30.19615 -28.19380 -27.91037 -26.53185 -24.40623 -24.12427 -22.99579 -22.76772 -21.34831 -20.59763 -20.13361 -19.03555 -17.58085 -17.01525 -16.48201 -16.44480 -16.03005 -15.03289 -14.95056 -14.78559 -14.54764 -14.11361 -13.90444 -13.86663 -13.71899 -13.51298 -13.41360 -13.37128 -13.07860 -12.85796 -12.79727 -12.69281 -12.39539 -12.16706 -12.10878 -12.06032 -11.67770 -11.61865 -11.20072 -10.98705 -10.85940 -10.79323 -10.45998 -10.30022 -10.18046 -10.14896 -9.93047 -9.58998 -9.55932 -9.31948 -8.80735 -8.45944 -6.83764 -5.70178 -2.97906 0.92518 1.58381 1.72267 3.01881 3.23112 3.47383 3.52883 3.55201 3.82569 3.93655 4.21323 4.27535 4.31618 4.47708 4.64727 4.75644 4.93051 4.95038 5.06259 5.08734 5.12096 5.15980 5.17705 5.25955 5.32577 5.36214 5.43607 5.55164 5.55706 5.62334 5.63528 5.65228 5.80647 5.85879 6.09134 6.11268 6.13373 6.20484 6.30893 6.32363 6.46512 6.59622 6.66209 6.78103 6.93373 7.03248 7.44331 7.76798 7.79798 8.16627 8.49226 9.60216 10.19670 10.54472 11.52919 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015268 B = 0.002491 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.462371 B =11236.558334 C =12551.028843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.120 3.880 3 C -0.101 4.101 4 C 0.604 3.396 5 O -0.549 6.549 6 N -0.591 5.591 7 C 0.082 3.918 8 C -0.122 4.122 9 C -0.095 4.095 10 C 0.158 3.842 11 N -0.732 5.732 12 C -0.236 4.236 13 H 0.069 0.931 14 C -0.016 4.016 15 N -0.933 5.933 16 Si 0.905 3.095 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.124 4.124 21 C 0.113 3.887 22 N -0.199 5.199 23 N -0.064 5.064 24 N -0.356 5.356 25 C 0.144 3.856 26 C -0.163 4.163 27 C -0.164 4.164 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.106 -19.772 10.064 29.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.017 4.017 3 C -0.239 4.239 4 C 0.390 3.610 5 O -0.427 6.427 6 N -0.322 5.322 7 C -0.041 4.041 8 C -0.160 4.160 9 C -0.114 4.114 10 C 0.031 3.969 11 N -0.376 5.376 12 C -0.367 4.367 13 H 0.087 0.913 14 C -0.212 4.212 15 N -0.582 5.582 16 Si 0.737 3.263 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.163 4.163 21 C -0.009 4.009 22 N -0.072 5.072 23 N -0.042 5.042 24 N -0.143 5.143 25 C 0.042 3.958 26 C -0.220 4.220 27 C -0.222 4.222 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.218 0.782 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.211 -19.970 9.976 29.452 hybrid contribution -0.030 0.487 -0.616 0.785 sum -19.241 -19.484 9.361 28.939 Atomic orbital electron populations 1.20676 0.84844 1.05090 1.04564 1.21872 0.96167 0.86352 0.97345 1.21194 0.88992 0.95337 1.18426 1.16767 0.85103 0.82546 0.76543 1.90727 1.16047 1.83431 1.52477 1.47933 1.09990 1.05949 1.68293 1.22748 0.79430 1.03912 0.97975 1.21985 1.02905 0.94474 0.96644 1.21331 0.94576 0.95638 0.99873 1.20668 0.86476 0.95894 0.93882 1.42393 1.00682 1.60892 1.33653 1.19283 0.90074 1.23304 1.04062 0.91256 1.24729 0.96369 1.00942 0.99120 1.69664 1.05980 1.44991 1.37604 0.86132 0.79565 0.78871 0.81746 1.20632 1.21931 1.21944 1.21895 0.96763 1.00011 0.97637 1.21671 1.01391 0.79625 0.98178 1.74459 1.18592 1.03631 1.10478 1.81991 0.96292 1.03671 1.22294 1.50640 1.06327 1.07198 1.50174 1.21653 1.00404 0.75307 0.98402 1.22157 1.03332 1.00838 0.95714 1.22174 1.03461 1.00840 0.95728 0.89069 0.87163 0.90856 0.91431 0.85709 0.92184 0.89476 0.91012 0.96532 0.96456 0.78215 0.93629 0.91607 0.90681 0.89179 0.91361 0.87335 0.91745 0.89899 0.90567 0.90517 0.89900 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 9.34 36.01 0.34 -0.33 16 2 C 0.12 1.26 7.02 -81.88 -0.57 0.69 16 3 C -0.10 -1.36 6.71 -83.55 -0.56 -1.92 16 4 C 0.60 8.88 7.67 -12.48 -0.10 8.78 16 5 O -0.55 -8.52 14.24 5.28 0.08 -8.44 16 6 N -0.59 -8.53 2.97 -173.74 -0.52 -9.05 16 7 C 0.08 1.23 6.12 -3.49 -0.02 1.21 16 8 C -0.12 -2.04 5.26 -26.38 -0.14 -2.18 16 9 C -0.10 -1.60 2.19 -90.58 -0.20 -1.80 16 10 C 0.16 3.30 5.65 -4.04 -0.02 3.27 16 11 N -0.73 -18.96 5.32 -59.91 -0.32 -19.28 16 12 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 13 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 14 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 15 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 16 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 C -0.12 -1.73 5.36 -26.61 -0.14 -1.87 16 21 C 0.11 1.49 6.44 -3.72 -0.02 1.47 16 22 N -0.20 -2.86 8.77 32.85 0.29 -2.57 16 23 N -0.06 -0.83 13.67 60.35 0.82 0.00 16 24 N -0.36 -3.43 3.28 -50.41 -0.17 -3.60 16 25 C 0.14 0.79 3.68 -67.93 -0.25 0.54 16 26 C -0.16 -0.76 9.47 37.16 0.35 -0.41 16 27 C -0.16 -0.82 9.47 37.16 0.35 -0.47 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.11 0.98 6.60 -51.93 -0.34 0.64 16 30 H 0.07 0.31 7.19 -51.93 -0.37 -0.06 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.13 1.92 4.08 -82.88 -0.34 1.58 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.66 7.15 -51.93 -0.37 1.28 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 10.36 6.84 -40.82 -0.28 10.08 16 39 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.17 7.00 -51.93 -0.36 0.80 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.11 0.33 6.79 -51.93 -0.35 -0.03 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 395.95 15.07 5.97 5.97 Total: -1.00 -34.35 395.95 -7.69 -42.04 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -8.31 Total: 5.57 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.23 Total: -0.51 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: 0.84 Total: -62.49 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.35 -7.69 -42.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206699426.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.456 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds