Wall clock time and date at job start Tue Mar 31 2020 18:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33240 * 125.52782 * 2 1 4 4 C 1.30827 * 109.82821 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.96177 * 180.02562 * 4 3 2 6 6 N 1.34428 * 108.08025 * 0.02562 * 4 3 2 7 7 C 1.46500 * 126.82629 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.47034 * 89.99861 * 7 6 4 9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46698 * 179.97438 * 9 8 7 11 11 O 1.21273 * 120.00314 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99424 * 179.97438 * 10 9 8 13 13 C 1.46928 * 120.63587 * 0.02751 * 12 10 9 14 14 C 1.53197 * 108.77576 * 233.58566 * 13 12 10 15 15 C 1.53043 * 109.31161 * 305.36176 * 14 13 12 16 16 C 1.53041 * 109.53838 * 61.36733 * 15 14 13 17 17 H 1.09002 * 109.52256 * 58.59804 * 16 15 14 18 18 N 1.46493 * 109.49594 * 178.68449 * 16 15 14 19 19 C 1.36945 * 119.99892 * 274.83414 * 18 16 15 20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 16 21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 16 22 22 N 1.31616 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47389 * 59.99917 * 23 21 19 25 25 H 1.48501 * 109.47057 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47102 * 299.99569 * 23 21 19 27 27 C 1.46934 * 120.63032 * 180.02562 * 12 10 9 28 28 N 1.30716 * 125.52451 * 180.27976 * 2 1 3 29 29 H 1.09005 * 109.47210 * 89.97241 * 1 2 3 30 30 H 1.08998 * 109.47255 * 209.97574 * 1 2 3 31 31 H 1.09001 * 109.47531 * 329.97782 * 1 2 3 32 32 H 1.09006 * 109.46900 * 269.96060 * 5 4 3 33 33 H 1.08997 * 109.47061 * 29.96107 * 5 4 3 34 34 H 1.08997 * 109.47330 * 149.95995 * 5 4 3 35 35 H 1.08995 * 109.47178 * 330.00091 * 7 6 4 36 36 H 1.09004 * 109.47457 * 209.99685 * 7 6 4 37 37 H 1.08995 * 109.46951 * 60.00090 * 8 7 6 38 38 H 1.09004 * 109.46855 * 300.00193 * 8 7 6 39 39 H 1.09003 * 109.47039 * 60.00162 * 9 8 7 40 40 H 1.08994 * 109.46780 * 299.99895 * 9 8 7 41 41 H 1.09004 * 109.58250 * 353.37128 * 13 12 10 42 42 H 1.08996 * 109.58661 * 113.79540 * 13 12 10 43 43 H 1.09000 * 109.49735 * 65.31233 * 14 13 12 44 44 H 1.09001 * 109.49577 * 185.37914 * 14 13 12 45 45 H 1.08996 * 109.45707 * 301.34649 * 15 14 13 46 46 H 1.08993 * 109.45503 * 181.38561 * 15 14 13 47 47 H 0.97000 * 120.00738 * 94.56879 * 18 16 15 48 48 H 0.97004 * 119.99151 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.58453 * 6.62779 * 27 12 10 50 50 H 1.08998 * 109.70250 * 246.27445 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7303 0.0006 5 6 4.7228 1.6652 0.0013 6 7 3.5965 -0.6128 0.0003 7 6 4.8047 -1.4414 0.0003 8 6 5.2252 -1.7301 1.4428 9 6 6.4873 -2.5950 1.4427 10 6 6.9018 -2.8787 2.8635 11 8 6.2516 -2.4335 3.7853 12 7 7.9946 -3.6281 3.1097 13 6 8.7922 -4.1749 2.0035 14 6 8.9343 -5.6877 2.1988 15 6 9.5123 -5.9666 3.5882 16 6 8.5577 -5.4292 4.6569 17 1 7.5825 -5.9033 4.5459 18 7 9.0966 -5.7244 5.9868 19 6 8.8516 -6.9387 6.5707 20 1 8.2573 -7.6768 6.0527 21 6 9.3669 -7.2206 7.8285 22 7 10.0906 -6.3206 8.4599 23 14 9.0332 -8.8771 8.6247 24 1 9.5762 -9.9585 7.7639 25 1 9.6888 -8.9273 9.9562 26 1 7.5687 -9.0621 8.7874 27 6 8.4111 -3.9139 4.4895 28 7 2.2665 -1.0638 -0.0052 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5142 32 1 5.0087 1.8902 -1.0263 33 1 4.4552 2.5888 0.5145 34 1 5.5593 1.1927 0.5160 35 1 5.6077 -0.9129 -0.5134 36 1 4.6009 -2.3809 -0.5137 37 1 4.4222 -2.2585 1.9565 38 1 5.4289 -0.7906 1.9567 39 1 7.2902 -2.0660 0.9291 40 1 6.2839 -3.5343 0.9287 41 1 8.2901 -3.9742 1.0570 42 1 9.7792 -3.7124 2.0013 43 1 7.9557 -6.1594 2.1105 44 1 9.6028 -6.0914 1.4384 45 1 10.4797 -5.4739 3.6845 46 1 9.6374 -7.0412 3.7203 47 1 9.6302 -5.0614 6.4521 48 1 10.4504 -6.5176 9.3389 49 1 7.6576 -3.5410 5.1832 50 1 9.3663 -3.4299 4.6927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210602196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:08 Heat of formation + Delta-G solvation = 49.617572 kcal Electronic energy + Delta-G solvation = -28490.936262 eV Core-core repulsion = 24554.759953 eV Total energy + Delta-G solvation = -3936.176309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.38946 -40.14971 -37.55619 -36.02544 -34.55029 -33.42762 -32.59414 -32.17136 -31.28051 -29.92482 -28.94669 -28.18273 -26.54540 -24.99974 -23.87456 -22.51619 -22.10371 -20.97757 -20.75607 -20.08564 -18.86906 -17.39850 -17.22820 -16.84671 -16.21040 -16.11868 -15.50860 -15.06112 -14.72269 -14.53197 -14.12630 -14.11047 -13.85475 -13.76829 -13.59646 -13.42899 -13.24036 -13.12445 -12.97533 -12.91516 -12.63092 -12.52985 -12.36149 -12.18001 -12.05793 -11.85683 -11.21190 -11.12357 -10.99216 -10.91910 -10.69739 -10.46505 -10.39964 -10.22274 -10.14014 -9.97172 -9.80253 -9.65317 -9.55582 -8.94108 -8.46988 -7.02336 -5.80455 -3.10304 1.32144 1.97316 2.62371 2.65556 3.03980 3.42024 3.46744 3.47518 3.72208 4.03445 4.22363 4.33798 4.52688 4.55891 4.58412 4.77651 4.80601 4.90021 4.92935 4.97737 4.99421 5.08024 5.16899 5.24410 5.26359 5.34295 5.46442 5.46910 5.50490 5.52499 5.63972 5.65079 5.71254 5.75921 5.87292 5.98031 6.07499 6.10729 6.19085 6.23197 6.33777 6.49600 6.54547 6.64193 6.83115 6.99858 7.50438 7.65948 7.87442 8.22964 8.37576 9.48597 10.03500 10.38466 11.41878 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.001941 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.681255 B =14422.704834 C =15031.888853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.218 3.782 3 N -0.545 5.545 4 C 0.279 3.721 5 C -0.079 4.079 6 N -0.375 5.375 7 C 0.127 3.873 8 C -0.121 4.121 9 C -0.135 4.135 10 C 0.511 3.489 11 O -0.541 6.541 12 N -0.605 5.605 13 C 0.107 3.893 14 C -0.134 4.134 15 C -0.138 4.138 16 C 0.168 3.832 17 H 0.049 0.951 18 N -0.721 5.721 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.105 3.895 28 N -0.317 5.317 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.384 0.616 48 H 0.256 0.744 49 H 0.092 0.908 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 13.532 -24.029 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.064 4.064 3 N -0.274 5.274 4 C 0.003 3.997 5 C -0.138 4.138 6 N -0.166 5.166 7 C 0.005 3.995 8 C -0.160 4.160 9 C -0.176 4.176 10 C 0.299 3.701 11 O -0.418 6.418 12 N -0.339 5.339 13 C -0.016 4.016 14 C -0.173 4.173 15 C -0.178 4.178 16 C 0.057 3.943 17 H 0.067 0.933 18 N -0.362 5.362 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.017 4.017 28 N -0.146 5.146 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.218 0.782 48 H 0.066 0.934 49 H 0.110 0.890 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.757 13.144 -23.451 28.273 hybrid contribution 0.532 -0.928 0.619 1.236 sum -8.225 12.216 -22.832 27.169 Atomic orbital electron populations 1.20080 0.83954 1.04081 1.03568 1.24277 0.98268 0.85747 0.98067 1.70347 0.99878 1.31005 1.26203 1.24355 0.95312 0.83914 0.96168 1.20417 0.91413 0.97628 1.04351 1.50310 1.05924 1.05478 1.54839 1.21872 0.82556 0.96167 0.98875 1.21719 0.97893 1.01593 0.94755 1.21577 0.98585 1.01967 0.95486 1.20447 0.80114 0.78400 0.91158 1.90728 1.52994 1.51658 1.46431 1.48136 1.26995 1.50797 1.07948 1.21786 0.95810 0.94934 0.89031 1.21942 1.01700 0.94587 0.99072 1.22290 0.99944 1.02321 0.93288 1.20464 0.95695 0.91345 0.86757 0.93257 1.42300 1.62285 1.17115 1.14490 1.19154 1.27067 0.92002 0.98937 0.91227 1.24755 1.00449 0.98193 0.97406 1.69651 1.39236 1.34059 1.14995 0.86256 0.77728 0.83556 0.78559 1.21253 1.21648 1.21216 1.21995 1.00723 0.97606 0.81399 1.78039 0.86730 1.22588 1.27227 0.89985 0.89994 0.89618 0.89097 0.88360 0.89738 0.88299 0.88154 0.89892 0.90389 0.88582 0.88414 0.90280 0.91298 0.91857 0.91304 0.92463 0.91539 0.78191 0.93385 0.88965 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.00 0.38 -0.07 16 2 C 0.22 2.60 8.14 -156.85 -1.28 1.32 16 3 N -0.55 -6.66 11.19 -8.16 -0.09 -6.75 16 4 C 0.28 2.80 7.98 -155.70 -1.24 1.55 16 5 C -0.08 -0.43 10.01 36.01 0.36 -0.07 16 6 N -0.38 -3.89 3.64 -58.34 -0.21 -4.10 16 7 C 0.13 0.86 6.13 -4.04 -0.02 0.84 16 8 C -0.12 -1.07 4.83 -26.73 -0.13 -1.20 16 9 C -0.14 -1.07 4.05 -27.88 -0.11 -1.18 16 10 C 0.51 6.93 7.70 -10.99 -0.08 6.84 16 11 O -0.54 -9.85 15.39 5.56 0.09 -9.77 16 12 N -0.61 -8.18 2.97 -172.78 -0.51 -8.70 16 13 C 0.11 1.06 6.34 -3.71 -0.02 1.03 16 14 C -0.13 -1.55 6.08 -26.61 -0.16 -1.72 16 15 C -0.14 -2.25 5.47 -26.69 -0.15 -2.40 16 16 C 0.17 3.28 2.92 -67.83 -0.20 3.09 16 17 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 18 N -0.72 -17.83 5.12 -53.33 -0.27 -18.10 16 19 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.11 1.82 5.90 -3.73 -0.02 1.80 16 28 N -0.32 -4.04 12.70 32.42 0.41 -3.63 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.33 7.76 -51.93 -0.40 -0.07 16 35 H 0.10 0.35 7.72 -51.93 -0.40 -0.06 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.10 0.47 7.94 -51.93 -0.41 0.05 16 40 H 0.10 0.61 7.69 -51.93 -0.40 0.21 16 41 H 0.08 0.51 5.93 -51.93 -0.31 0.20 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.09 1.84 7.01 -51.93 -0.36 1.47 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 406.40 15.07 6.12 6.12 Total: -1.00 -36.81 406.40 -10.18 -47.00 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.49 Total: 5.18 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -2.93 Total: 2.64 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: 0.05 Total: -68.51 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.81 -10.18 -47.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210602196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.614 kcal (2) G-P(sol) polarization free energy of solvation -36.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds