Wall clock time and date at job start Tue Mar 31 2020 18:37:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.33240 * 125.52782 * 2 1
4 4 C 1.30827 * 109.82821 * 179.97438 * 3 2 1
5 5 C 1.50705 * 125.96177 * 180.02562 * 4 3 2
6 6 N 1.34428 * 108.08025 * 0.02562 * 4 3 2
7 7 C 1.46500 * 126.82629 * 179.97438 * 6 4 3
8 8 C 1.53006 * 109.47034 * 89.99861 * 7 6 4
9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 6
10 10 C 1.50701 * 109.46698 * 179.97438 * 9 8 7
11 11 O 1.21273 * 120.00314 * 0.02562 * 10 9 8
12 12 N 1.34773 * 119.99424 * 179.97438 * 10 9 8
13 13 C 1.46928 * 120.63587 * 0.02751 * 12 10 9
14 14 C 1.53197 * 108.77576 * 233.58566 * 13 12 10
15 15 C 1.53043 * 109.31161 * 305.36176 * 14 13 12
16 16 C 1.53041 * 109.53838 * 61.36733 * 15 14 13
17 17 H 1.09002 * 109.52256 * 58.59804 * 16 15 14
18 18 N 1.46493 * 109.49594 * 178.68449 * 16 15 14
19 19 C 1.36945 * 119.99892 * 274.83414 * 18 16 15
20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 16
21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 16
22 22 N 1.31616 * 119.99707 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18
24 24 H 1.48500 * 109.47389 * 59.99917 * 23 21 19
25 25 H 1.48501 * 109.47057 * 180.02562 * 23 21 19
26 26 H 1.48504 * 109.47102 * 299.99569 * 23 21 19
27 27 C 1.46934 * 120.63032 * 180.02562 * 12 10 9
28 28 N 1.30716 * 125.52451 * 180.27976 * 2 1 3
29 29 H 1.09005 * 109.47210 * 89.97241 * 1 2 3
30 30 H 1.08998 * 109.47255 * 209.97574 * 1 2 3
31 31 H 1.09001 * 109.47531 * 329.97782 * 1 2 3
32 32 H 1.09006 * 109.46900 * 269.96060 * 5 4 3
33 33 H 1.08997 * 109.47061 * 29.96107 * 5 4 3
34 34 H 1.08997 * 109.47330 * 149.95995 * 5 4 3
35 35 H 1.08995 * 109.47178 * 330.00091 * 7 6 4
36 36 H 1.09004 * 109.47457 * 209.99685 * 7 6 4
37 37 H 1.08995 * 109.46951 * 60.00090 * 8 7 6
38 38 H 1.09004 * 109.46855 * 300.00193 * 8 7 6
39 39 H 1.09003 * 109.47039 * 60.00162 * 9 8 7
40 40 H 1.08994 * 109.46780 * 299.99895 * 9 8 7
41 41 H 1.09004 * 109.58250 * 353.37128 * 13 12 10
42 42 H 1.08996 * 109.58661 * 113.79540 * 13 12 10
43 43 H 1.09000 * 109.49735 * 65.31233 * 14 13 12
44 44 H 1.09001 * 109.49577 * 185.37914 * 14 13 12
45 45 H 1.08996 * 109.45707 * 301.34649 * 15 14 13
46 46 H 1.08993 * 109.45503 * 181.38561 * 15 14 13
47 47 H 0.97000 * 120.00738 * 94.56879 * 18 16 15
48 48 H 0.97004 * 119.99151 * 179.97438 * 22 21 19
49 49 H 1.08999 * 109.58453 * 6.62779 * 27 12 10
50 50 H 1.08998 * 109.70250 * 246.27445 * 27 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2812 1.0844 0.0000
4 6 3.5407 0.7303 0.0006
5 6 4.7228 1.6652 0.0013
6 7 3.5965 -0.6128 0.0003
7 6 4.8047 -1.4414 0.0003
8 6 5.2252 -1.7301 1.4428
9 6 6.4873 -2.5950 1.4427
10 6 6.9018 -2.8787 2.8635
11 8 6.2516 -2.4335 3.7853
12 7 7.9946 -3.6281 3.1097
13 6 8.7922 -4.1749 2.0035
14 6 8.9343 -5.6877 2.1988
15 6 9.5123 -5.9666 3.5882
16 6 8.5577 -5.4292 4.6569
17 1 7.5825 -5.9033 4.5459
18 7 9.0966 -5.7244 5.9868
19 6 8.8516 -6.9387 6.5707
20 1 8.2573 -7.6768 6.0527
21 6 9.3669 -7.2206 7.8285
22 7 10.0906 -6.3206 8.4599
23 14 9.0332 -8.8771 8.6247
24 1 9.5762 -9.9585 7.7639
25 1 9.6888 -8.9273 9.9562
26 1 7.5687 -9.0621 8.7874
27 6 8.4111 -3.9139 4.4895
28 7 2.2665 -1.0638 -0.0052
29 1 -0.3634 0.0005 -1.0277
30 1 -0.3634 -0.8902 0.5134
31 1 -0.3634 0.8898 0.5142
32 1 5.0087 1.8902 -1.0263
33 1 4.4552 2.5888 0.5145
34 1 5.5593 1.1927 0.5160
35 1 5.6077 -0.9129 -0.5134
36 1 4.6009 -2.3809 -0.5137
37 1 4.4222 -2.2585 1.9565
38 1 5.4289 -0.7906 1.9567
39 1 7.2902 -2.0660 0.9291
40 1 6.2839 -3.5343 0.9287
41 1 8.2901 -3.9742 1.0570
42 1 9.7792 -3.7124 2.0013
43 1 7.9557 -6.1594 2.1105
44 1 9.6028 -6.0914 1.4384
45 1 10.4797 -5.4739 3.6845
46 1 9.6374 -7.0412 3.7203
47 1 9.6302 -5.0614 6.4521
48 1 10.4504 -6.5176 9.3389
49 1 7.6576 -3.5410 5.1832
50 1 9.3663 -3.4299 4.6927
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001210602196.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:37:07
Heat of formation + Delta-G solvation = 24.703693 kcal
Electronic energy + Delta-G solvation = -28492.016609 eV
Core-core repulsion = 24554.759953 eV
Total energy + Delta-G solvation = -3937.256656 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-43.12438 -41.25642 -38.82127 -36.75650 -36.21777 -34.19583 -33.81491 -33.20285
-32.73708 -30.69513 -30.11918 -29.16474 -27.38469 -26.19861 -25.55369 -23.44062
-23.29667 -21.72517 -21.45002 -21.39277 -20.01628 -19.15925 -18.33911 -17.65563
-17.06017 -16.91692 -16.67058 -16.59681 -15.82196 -15.57903 -15.36568 -15.21111
-15.12438 -14.75062 -14.55663 -14.42789 -14.25840 -13.97935 -13.88930 -13.63159
-13.58391 -13.34019 -13.16620 -13.00463 -12.88334 -12.86140 -12.73297 -12.53937
-12.35213 -12.18262 -12.13299 -11.84515 -11.83350 -11.72059 -11.62138 -11.03211
-10.93010 -10.86087 -10.71256 -10.29162 -9.66505 -9.05608 -7.98678 -5.28271
0.58335 1.35929 1.43490 1.46888 1.52814 1.63430 1.84929 2.00261
2.53557 3.13829 3.33884 3.44832 3.46439 3.72121 3.81106 3.91084
3.96095 4.00428 4.02518 4.15456 4.26832 4.30123 4.36551 4.39096
4.41339 4.52482 4.58043 4.66863 4.67930 4.71109 4.79908 4.81997
4.85775 4.90146 4.91640 4.97166 5.02788 5.08086 5.17350 5.20254
5.37410 5.40378 5.42248 5.50128 5.52675 5.59331 5.93176 6.23059
6.48240 7.11147 7.19087 7.28720 8.02097 8.25974 9.24301
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.018666 B = 0.001941 C = 0.001862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1499.681255 B =14422.704834 C =15031.888853
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 C 0.203 3.797
3 N -0.579 5.579
4 C 0.275 3.725
5 C -0.078 4.078
6 N -0.381 5.381
7 C 0.127 3.873
8 C -0.112 4.112
9 C -0.121 4.121
10 C 0.501 3.499
11 O -0.601 6.601
12 N -0.605 5.605
13 C 0.104 3.896
14 C -0.126 4.126
15 C -0.129 4.129
16 C 0.166 3.834
17 H 0.027 0.973
18 N -0.736 5.736
19 C -0.241 4.241
20 H 0.072 0.928
21 C -0.075 4.075
22 N -0.968 5.968
23 Si 0.973 3.027
24 H -0.274 1.274
25 H -0.294 1.294
26 H -0.282 1.282
27 C 0.118 3.882
28 N -0.356 5.356
29 H 0.097 0.903
30 H 0.085 0.915
31 H 0.091 0.909
32 H 0.116 0.884
33 H 0.097 0.903
34 H 0.104 0.896
35 H 0.145 0.855
36 H 0.111 0.889
37 H 0.038 0.962
38 H 0.063 0.937
39 H 0.146 0.854
40 H 0.128 0.872
41 H 0.131 0.869
42 H 0.086 0.914
43 H 0.060 0.940
44 H 0.104 0.896
45 H 0.056 0.944
46 H 0.042 0.958
47 H 0.373 0.627
48 H 0.252 0.748
49 H 0.054 0.946
50 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.961 13.613 -27.943 31.852
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.079 4.079
3 N -0.310 5.310
4 C -0.001 4.001
5 C -0.136 4.136
6 N -0.171 5.171
7 C 0.006 3.994
8 C -0.151 4.151
9 C -0.161 4.161
10 C 0.292 3.708
11 O -0.482 6.482
12 N -0.337 5.337
13 C -0.017 4.017
14 C -0.165 4.165
15 C -0.169 4.169
16 C 0.057 3.943
17 H 0.045 0.955
18 N -0.377 5.377
19 C -0.373 4.373
20 H 0.090 0.910
21 C -0.267 4.267
22 N -0.618 5.618
23 Si 0.802 3.198
24 H -0.200 1.200
25 H -0.220 1.220
26 H -0.208 1.208
27 C -0.006 4.006
28 N -0.185 5.185
29 H 0.116 0.884
30 H 0.104 0.896
31 H 0.110 0.890
32 H 0.134 0.866
33 H 0.116 0.884
34 H 0.122 0.878
35 H 0.163 0.837
36 H 0.129 0.871
37 H 0.057 0.943
38 H 0.082 0.918
39 H 0.164 0.836
40 H 0.146 0.854
41 H 0.149 0.851
42 H 0.105 0.895
43 H 0.079 0.921
44 H 0.122 0.878
45 H 0.075 0.925
46 H 0.061 0.939
47 H 0.205 0.795
48 H 0.061 0.939
49 H 0.073 0.927
50 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -7.676 13.201 -27.453 31.415
hybrid contribution 0.178 -0.913 1.818 2.042
sum -7.498 12.288 -25.635 29.401
Atomic orbital electron populations
1.20200 0.82106 1.04531 1.04695 1.24934 0.99721 0.85665 0.97601
1.70355 1.01160 1.31706 1.27739 1.25211 0.95942 0.84465 0.94474
1.20655 0.90097 0.96675 1.06212 1.50522 1.05906 1.06034 1.54654
1.22157 0.82524 0.97204 0.97479 1.21574 0.97173 1.00562 0.95834
1.21643 0.99208 1.03759 0.91445 1.21594 0.78973 0.77059 0.93171
1.90712 1.54705 1.53885 1.48883 1.48245 1.27608 1.50897 1.06994
1.22168 0.96916 0.93187 0.89436 1.21917 1.01929 0.96397 0.96240
1.22080 0.99132 1.00387 0.95329 1.20645 0.95135 0.92959 0.85574
0.95480 1.42493 1.62488 1.16116 1.16567 1.19495 1.25903 0.92873
0.99027 0.91030 1.25572 1.01115 1.01793 0.98250 1.69808 1.40879
1.35958 1.15135 0.85219 0.77492 0.79734 0.77360 1.20001 1.21999
1.20840 1.21502 0.99675 0.95608 0.83852 1.77935 0.88231 1.23702
1.28634 0.88440 0.89634 0.88994 0.86554 0.88444 0.87784 0.83689
0.87075 0.94273 0.91822 0.83584 0.85436 0.85113 0.89542 0.92097
0.87805 0.92489 0.93917 0.79509 0.93945 0.92742 0.91369
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.89 10.51 71.23 0.75 -0.14 16
2 C 0.20 4.87 8.14 138.63 1.13 5.99 16
3 N -0.58 -14.03 11.19 -179.73 -2.01 -16.04 16
4 C 0.27 5.13 7.98 138.23 1.10 6.23 16
5 C -0.08 -0.62 10.01 71.24 0.71 0.09 16
6 N -0.38 -7.33 3.64 -338.48 -1.23 -8.56 16
7 C 0.13 1.28 6.13 86.38 0.53 1.81 16
8 C -0.11 -1.77 4.83 30.60 0.15 -1.62 16
9 C -0.12 -1.37 4.05 29.85 0.12 -1.25 16
10 C 0.50 12.80 7.70 87.66 0.67 13.47 16
11 O -0.60 -22.62 15.39 -3.01 -0.05 -22.67 16
12 N -0.60 -15.17 2.97 -818.96 -2.43 -17.60 16
13 C 0.10 1.52 6.34 86.36 0.55 2.07 16
14 C -0.13 -2.44 6.08 30.67 0.19 -2.26 16
15 C -0.13 -4.10 5.47 30.62 0.17 -3.93 16
16 C 0.17 6.64 2.92 45.06 0.13 6.77 16
17 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16
18 N -0.74 -37.88 5.12 -322.63 -1.65 -39.53 16
19 C -0.24 -13.65 9.93 84.03 0.83 -12.81 16
20 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16
21 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16
22 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16
23 Si 0.97 46.82 29.55 68.60 2.03 48.84 16
24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16
25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16
26 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16
27 C 0.12 4.18 5.90 86.35 0.51 4.69 16
28 N -0.36 -9.04 12.70 -51.34 -0.65 -9.70 16
29 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16
30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
32 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16
33 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16
34 H 0.10 0.42 7.76 -2.39 -0.02 0.40 16
35 H 0.15 0.14 7.72 -2.39 -0.02 0.13 16
36 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16
37 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16
38 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16
39 H 0.15 0.32 7.94 -2.39 -0.02 0.30 16
40 H 0.13 0.81 7.69 -2.39 -0.02 0.79 16
41 H 0.13 0.67 5.93 -2.38 -0.01 0.66 16
42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16
43 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16
44 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16
45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
47 H 0.37 20.51 7.80 -92.71 -0.72 19.79 16
48 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16
49 H 0.05 2.32 7.01 -2.39 -0.02 2.31 16
50 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16
Total: -1.00 -89.08 406.40 2.50 -86.58
By element:
Atomic # 1 Polarization: 22.81 SS G_CDS: 0.21 Total: 23.02 kcal
Atomic # 6 Polarization: 7.22 SS G_CDS: 8.01 Total: 15.23 kcal
Atomic # 7 Polarization: -143.32 SS G_CDS: -7.70 Total: -151.01 kcal
Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.67 kcal
Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal
Total: -89.08 2.50 -86.58 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001210602196.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.286 kcal
(2) G-P(sol) polarization free energy of solvation -89.084 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.203 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.583 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.704 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds