Wall clock time and date at job start Tue Mar 31 2020 18:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33240 * 125.52782 * 2 1 4 4 C 1.30827 * 109.82821 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.96177 * 180.02562 * 4 3 2 6 6 N 1.34428 * 108.08025 * 0.02562 * 4 3 2 7 7 C 1.46500 * 126.82629 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.47034 * 89.99861 * 7 6 4 9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46698 * 179.97438 * 9 8 7 11 11 O 1.21273 * 120.00314 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99424 * 179.97438 * 10 9 8 13 13 C 1.46928 * 120.63587 * 0.02751 * 12 10 9 14 14 C 1.53197 * 108.77576 * 233.58566 * 13 12 10 15 15 C 1.53043 * 109.31161 * 305.36176 * 14 13 12 16 16 C 1.53041 * 109.53838 * 61.36733 * 15 14 13 17 17 H 1.09002 * 109.52256 * 58.59804 * 16 15 14 18 18 N 1.46493 * 109.49594 * 178.68449 * 16 15 14 19 19 C 1.36945 * 119.99892 * 274.83414 * 18 16 15 20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 16 21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 16 22 22 N 1.31616 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47389 * 59.99917 * 23 21 19 25 25 H 1.48501 * 109.47057 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47102 * 299.99569 * 23 21 19 27 27 C 1.46934 * 120.63032 * 180.02562 * 12 10 9 28 28 N 1.30716 * 125.52451 * 180.27976 * 2 1 3 29 29 H 1.09005 * 109.47210 * 89.97241 * 1 2 3 30 30 H 1.08998 * 109.47255 * 209.97574 * 1 2 3 31 31 H 1.09001 * 109.47531 * 329.97782 * 1 2 3 32 32 H 1.09006 * 109.46900 * 269.96060 * 5 4 3 33 33 H 1.08997 * 109.47061 * 29.96107 * 5 4 3 34 34 H 1.08997 * 109.47330 * 149.95995 * 5 4 3 35 35 H 1.08995 * 109.47178 * 330.00091 * 7 6 4 36 36 H 1.09004 * 109.47457 * 209.99685 * 7 6 4 37 37 H 1.08995 * 109.46951 * 60.00090 * 8 7 6 38 38 H 1.09004 * 109.46855 * 300.00193 * 8 7 6 39 39 H 1.09003 * 109.47039 * 60.00162 * 9 8 7 40 40 H 1.08994 * 109.46780 * 299.99895 * 9 8 7 41 41 H 1.09004 * 109.58250 * 353.37128 * 13 12 10 42 42 H 1.08996 * 109.58661 * 113.79540 * 13 12 10 43 43 H 1.09000 * 109.49735 * 65.31233 * 14 13 12 44 44 H 1.09001 * 109.49577 * 185.37914 * 14 13 12 45 45 H 1.08996 * 109.45707 * 301.34649 * 15 14 13 46 46 H 1.08993 * 109.45503 * 181.38561 * 15 14 13 47 47 H 0.97000 * 120.00738 * 94.56879 * 18 16 15 48 48 H 0.97004 * 119.99151 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.58453 * 6.62779 * 27 12 10 50 50 H 1.08998 * 109.70250 * 246.27445 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7303 0.0006 5 6 4.7228 1.6652 0.0013 6 7 3.5965 -0.6128 0.0003 7 6 4.8047 -1.4414 0.0003 8 6 5.2252 -1.7301 1.4428 9 6 6.4873 -2.5950 1.4427 10 6 6.9018 -2.8787 2.8635 11 8 6.2516 -2.4335 3.7853 12 7 7.9946 -3.6281 3.1097 13 6 8.7922 -4.1749 2.0035 14 6 8.9343 -5.6877 2.1988 15 6 9.5123 -5.9666 3.5882 16 6 8.5577 -5.4292 4.6569 17 1 7.5825 -5.9033 4.5459 18 7 9.0966 -5.7244 5.9868 19 6 8.8516 -6.9387 6.5707 20 1 8.2573 -7.6768 6.0527 21 6 9.3669 -7.2206 7.8285 22 7 10.0906 -6.3206 8.4599 23 14 9.0332 -8.8771 8.6247 24 1 9.5762 -9.9585 7.7639 25 1 9.6888 -8.9273 9.9562 26 1 7.5687 -9.0621 8.7874 27 6 8.4111 -3.9139 4.4895 28 7 2.2665 -1.0638 -0.0052 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5142 32 1 5.0087 1.8902 -1.0263 33 1 4.4552 2.5888 0.5145 34 1 5.5593 1.1927 0.5160 35 1 5.6077 -0.9129 -0.5134 36 1 4.6009 -2.3809 -0.5137 37 1 4.4222 -2.2585 1.9565 38 1 5.4289 -0.7906 1.9567 39 1 7.2902 -2.0660 0.9291 40 1 6.2839 -3.5343 0.9287 41 1 8.2901 -3.9742 1.0570 42 1 9.7792 -3.7124 2.0013 43 1 7.9557 -6.1594 2.1105 44 1 9.6028 -6.0914 1.4384 45 1 10.4797 -5.4739 3.6845 46 1 9.6374 -7.0412 3.7203 47 1 9.6302 -5.0614 6.4521 48 1 10.4504 -6.5176 9.3389 49 1 7.6576 -3.5410 5.1832 50 1 9.3663 -3.4299 4.6927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210602196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:07 Heat of formation + Delta-G solvation = 24.703693 kcal Electronic energy + Delta-G solvation = -28492.016609 eV Core-core repulsion = 24554.759953 eV Total energy + Delta-G solvation = -3937.256656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.12438 -41.25642 -38.82127 -36.75650 -36.21777 -34.19583 -33.81491 -33.20285 -32.73708 -30.69513 -30.11918 -29.16474 -27.38469 -26.19861 -25.55369 -23.44062 -23.29667 -21.72517 -21.45002 -21.39277 -20.01628 -19.15925 -18.33911 -17.65563 -17.06017 -16.91692 -16.67058 -16.59681 -15.82196 -15.57903 -15.36568 -15.21111 -15.12438 -14.75062 -14.55663 -14.42789 -14.25840 -13.97935 -13.88930 -13.63159 -13.58391 -13.34019 -13.16620 -13.00463 -12.88334 -12.86140 -12.73297 -12.53937 -12.35213 -12.18262 -12.13299 -11.84515 -11.83350 -11.72059 -11.62138 -11.03211 -10.93010 -10.86087 -10.71256 -10.29162 -9.66505 -9.05608 -7.98678 -5.28271 0.58335 1.35929 1.43490 1.46888 1.52814 1.63430 1.84929 2.00261 2.53557 3.13829 3.33884 3.44832 3.46439 3.72121 3.81106 3.91084 3.96095 4.00428 4.02518 4.15456 4.26832 4.30123 4.36551 4.39096 4.41339 4.52482 4.58043 4.66863 4.67930 4.71109 4.79908 4.81997 4.85775 4.90146 4.91640 4.97166 5.02788 5.08086 5.17350 5.20254 5.37410 5.40378 5.42248 5.50128 5.52675 5.59331 5.93176 6.23059 6.48240 7.11147 7.19087 7.28720 8.02097 8.25974 9.24301 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.001941 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.681255 B =14422.704834 C =15031.888853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.203 3.797 3 N -0.579 5.579 4 C 0.275 3.725 5 C -0.078 4.078 6 N -0.381 5.381 7 C 0.127 3.873 8 C -0.112 4.112 9 C -0.121 4.121 10 C 0.501 3.499 11 O -0.601 6.601 12 N -0.605 5.605 13 C 0.104 3.896 14 C -0.126 4.126 15 C -0.129 4.129 16 C 0.166 3.834 17 H 0.027 0.973 18 N -0.736 5.736 19 C -0.241 4.241 20 H 0.072 0.928 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.973 3.027 24 H -0.274 1.274 25 H -0.294 1.294 26 H -0.282 1.282 27 C 0.118 3.882 28 N -0.356 5.356 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.111 0.889 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.146 0.854 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.054 0.946 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.961 13.613 -27.943 31.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.079 4.079 3 N -0.310 5.310 4 C -0.001 4.001 5 C -0.136 4.136 6 N -0.171 5.171 7 C 0.006 3.994 8 C -0.151 4.151 9 C -0.161 4.161 10 C 0.292 3.708 11 O -0.482 6.482 12 N -0.337 5.337 13 C -0.017 4.017 14 C -0.165 4.165 15 C -0.169 4.169 16 C 0.057 3.943 17 H 0.045 0.955 18 N -0.377 5.377 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.802 3.198 24 H -0.200 1.200 25 H -0.220 1.220 26 H -0.208 1.208 27 C -0.006 4.006 28 N -0.185 5.185 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.163 0.837 36 H 0.129 0.871 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.164 0.836 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.122 0.878 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.205 0.795 48 H 0.061 0.939 49 H 0.073 0.927 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.676 13.201 -27.453 31.415 hybrid contribution 0.178 -0.913 1.818 2.042 sum -7.498 12.288 -25.635 29.401 Atomic orbital electron populations 1.20200 0.82106 1.04531 1.04695 1.24934 0.99721 0.85665 0.97601 1.70355 1.01160 1.31706 1.27739 1.25211 0.95942 0.84465 0.94474 1.20655 0.90097 0.96675 1.06212 1.50522 1.05906 1.06034 1.54654 1.22157 0.82524 0.97204 0.97479 1.21574 0.97173 1.00562 0.95834 1.21643 0.99208 1.03759 0.91445 1.21594 0.78973 0.77059 0.93171 1.90712 1.54705 1.53885 1.48883 1.48245 1.27608 1.50897 1.06994 1.22168 0.96916 0.93187 0.89436 1.21917 1.01929 0.96397 0.96240 1.22080 0.99132 1.00387 0.95329 1.20645 0.95135 0.92959 0.85574 0.95480 1.42493 1.62488 1.16116 1.16567 1.19495 1.25903 0.92873 0.99027 0.91030 1.25572 1.01115 1.01793 0.98250 1.69808 1.40879 1.35958 1.15135 0.85219 0.77492 0.79734 0.77360 1.20001 1.21999 1.20840 1.21502 0.99675 0.95608 0.83852 1.77935 0.88231 1.23702 1.28634 0.88440 0.89634 0.88994 0.86554 0.88444 0.87784 0.83689 0.87075 0.94273 0.91822 0.83584 0.85436 0.85113 0.89542 0.92097 0.87805 0.92489 0.93917 0.79509 0.93945 0.92742 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.51 71.23 0.75 -0.14 16 2 C 0.20 4.87 8.14 138.63 1.13 5.99 16 3 N -0.58 -14.03 11.19 -179.73 -2.01 -16.04 16 4 C 0.27 5.13 7.98 138.23 1.10 6.23 16 5 C -0.08 -0.62 10.01 71.24 0.71 0.09 16 6 N -0.38 -7.33 3.64 -338.48 -1.23 -8.56 16 7 C 0.13 1.28 6.13 86.38 0.53 1.81 16 8 C -0.11 -1.77 4.83 30.60 0.15 -1.62 16 9 C -0.12 -1.37 4.05 29.85 0.12 -1.25 16 10 C 0.50 12.80 7.70 87.66 0.67 13.47 16 11 O -0.60 -22.62 15.39 -3.01 -0.05 -22.67 16 12 N -0.60 -15.17 2.97 -818.96 -2.43 -17.60 16 13 C 0.10 1.52 6.34 86.36 0.55 2.07 16 14 C -0.13 -2.44 6.08 30.67 0.19 -2.26 16 15 C -0.13 -4.10 5.47 30.62 0.17 -3.93 16 16 C 0.17 6.64 2.92 45.06 0.13 6.77 16 17 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 18 N -0.74 -37.88 5.12 -322.63 -1.65 -39.53 16 19 C -0.24 -13.65 9.93 84.03 0.83 -12.81 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 22 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 23 Si 0.97 46.82 29.55 68.60 2.03 48.84 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 27 C 0.12 4.18 5.90 86.35 0.51 4.69 16 28 N -0.36 -9.04 12.70 -51.34 -0.65 -9.70 16 29 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 33 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 0.42 7.76 -2.39 -0.02 0.40 16 35 H 0.15 0.14 7.72 -2.39 -0.02 0.13 16 36 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 38 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 39 H 0.15 0.32 7.94 -2.39 -0.02 0.30 16 40 H 0.13 0.81 7.69 -2.39 -0.02 0.79 16 41 H 0.13 0.67 5.93 -2.38 -0.01 0.66 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 44 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.37 20.51 7.80 -92.71 -0.72 19.79 16 48 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 49 H 0.05 2.32 7.01 -2.39 -0.02 2.31 16 50 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -89.08 406.40 2.50 -86.58 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.21 Total: 23.02 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 8.01 Total: 15.23 kcal Atomic # 7 Polarization: -143.32 SS G_CDS: -7.70 Total: -151.01 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -89.08 2.50 -86.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210602196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.286 kcal (2) G-P(sol) polarization free energy of solvation -89.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds