Wall clock time and date at job start Tue Mar 31 2020 18:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33244 * 125.52871 * 2 1 4 4 C 1.30822 * 109.83154 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.96172 * 179.97438 * 4 3 2 6 6 N 1.34431 * 108.07969 * 359.97438 * 4 3 2 7 7 C 1.46502 * 126.82694 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47274 * 89.99535 * 7 6 4 9 9 C 1.53000 * 109.47222 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.47301 * 180.02562 * 9 8 7 11 11 O 1.21275 * 119.99961 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99872 * 179.97438 * 10 9 8 13 13 C 1.47426 * 125.64500 * 179.97438 * 12 10 9 14 14 C 1.54914 * 104.82992 * 204.16642 * 13 12 10 15 15 H 1.09004 * 111.00278 * 81.10732 * 14 13 12 16 16 C 1.53000 * 111.00205 * 204.91932 * 14 13 12 17 17 C 1.55405 * 101.66697 * 323.07703 * 14 13 12 18 18 H 1.09000 * 110.69068 * 277.04987 * 17 14 13 19 19 N 1.46495 * 110.85076 * 153.69955 * 17 14 13 20 20 C 1.36934 * 119.99717 * 160.08604 * 19 17 14 21 21 H 1.08002 * 120.00471 * 359.97438 * 20 19 17 22 22 C 1.38816 * 119.99836 * 180.02562 * 20 19 17 23 23 N 1.31613 * 120.00160 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99860 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47550 * 89.99710 * 24 22 20 26 26 H 1.48503 * 109.46790 * 209.99816 * 24 22 20 27 27 H 1.48504 * 109.47100 * 329.99312 * 24 22 20 28 28 C 1.47018 * 125.64981 * 0.02817 * 12 10 9 29 29 N 1.30711 * 125.52718 * 180.28211 * 2 1 3 30 30 H 1.08998 * 109.47109 * 89.97772 * 1 2 3 31 31 H 1.09009 * 109.46854 * 209.97592 * 1 2 3 32 32 H 1.08994 * 109.47092 * 329.97419 * 1 2 3 33 33 H 1.09007 * 109.46615 * 270.03512 * 5 4 3 34 34 H 1.08999 * 109.47285 * 30.03266 * 5 4 3 35 35 H 1.09002 * 109.47398 * 150.04262 * 5 4 3 36 36 H 1.09001 * 109.46589 * 329.99924 * 7 6 4 37 37 H 1.08998 * 109.47136 * 210.00205 * 7 6 4 38 38 H 1.09005 * 109.46799 * 60.00170 * 8 7 6 39 39 H 1.08998 * 109.47586 * 300.00394 * 8 7 6 40 40 H 1.08997 * 109.46786 * 59.99835 * 9 8 7 41 41 H 1.09007 * 109.46838 * 300.00612 * 9 8 7 42 42 H 1.08999 * 110.36956 * 323.01018 * 13 12 10 43 43 H 1.09001 * 110.36709 * 85.22211 * 13 12 10 44 44 H 1.08997 * 109.47294 * 58.54570 * 16 14 13 45 45 H 1.08997 * 109.47279 * 178.55250 * 16 14 13 46 46 H 1.09006 * 109.47100 * 298.55044 * 16 14 13 47 47 H 0.96997 * 120.00433 * 340.08762 * 19 17 14 48 48 H 0.97005 * 120.00291 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.88241 * 298.32048 * 28 12 10 50 50 H 1.09000 * 109.88049 * 59.33177 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5407 0.7304 0.0006 5 6 4.7227 1.6653 0.0002 6 7 3.5966 -0.6127 0.0015 7 6 4.8048 -1.4414 0.0018 8 6 5.2258 -1.7287 1.4444 9 6 6.4879 -2.5936 1.4448 10 6 6.9022 -2.8771 2.8656 11 8 6.2517 -2.4318 3.7873 12 7 7.9949 -3.6265 3.1121 13 6 8.5114 -3.9795 4.4471 14 6 10.0170 -4.2691 4.2260 15 1 10.5918 -3.3436 4.1908 16 6 10.5594 -5.2074 5.3059 17 6 10.0023 -4.9664 2.8372 18 1 9.7677 -6.0258 2.9407 19 7 11.2815 -4.7822 2.1476 20 6 11.6371 -5.6241 1.1279 21 1 10.9746 -6.4242 0.8322 22 6 12.8495 -5.4498 0.4747 23 7 13.6571 -4.4751 0.8352 24 14 13.3342 -6.5979 -0.9168 25 1 12.8440 -6.0477 -2.2061 26 1 14.8132 -6.7233 -0.9626 27 1 12.7309 -7.9354 -0.6880 28 6 8.8700 -4.2264 2.0944 29 7 2.2666 -1.0638 -0.0052 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3633 0.8897 0.5142 33 1 5.0075 1.8904 -1.0277 34 1 4.4557 2.5889 0.5138 35 1 5.5600 1.1927 0.5139 36 1 5.6076 -0.9132 -0.5126 37 1 4.6009 -2.3811 -0.5113 38 1 4.4228 -2.2568 1.9589 39 1 5.4296 -0.7889 1.9576 40 1 7.2905 -2.0651 0.9305 41 1 6.2844 -3.5334 0.9315 42 1 8.3827 -3.1451 5.1365 43 1 8.0047 -4.8664 4.8275 44 1 9.9967 -6.1409 5.2923 45 1 11.6118 -5.4146 5.1122 46 1 10.4559 -4.7352 6.2829 47 1 11.8767 -4.0638 2.4133 48 1 14.5042 -4.3531 0.3786 49 1 8.3027 -4.9314 1.4867 50 1 9.2907 -3.4457 1.4606 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216323829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:30 Heat of formation + Delta-G solvation = 48.974490 kcal Electronic energy + Delta-G solvation = -28472.319469 eV Core-core repulsion = 24536.115274 eV Total energy + Delta-G solvation = -3936.204195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.32719 -39.96979 -37.80674 -35.94127 -34.15173 -33.37253 -32.71705 -32.24051 -30.80238 -29.83552 -28.66550 -27.59969 -26.99069 -25.50124 -24.06756 -22.61692 -21.44990 -20.91668 -20.67456 -20.03543 -19.01124 -17.24818 -17.21374 -16.67585 -16.31026 -16.06749 -15.71744 -15.03718 -14.72835 -14.57687 -14.16969 -13.84449 -13.72576 -13.61780 -13.36655 -13.30664 -13.12619 -13.03899 -12.81905 -12.67871 -12.57388 -12.43006 -12.22910 -12.18072 -11.90507 -11.76598 -11.60982 -11.21794 -11.09851 -11.06624 -10.81643 -10.67736 -10.33397 -10.17001 -10.05336 -9.93083 -9.85354 -9.72633 -9.50455 -9.08559 -8.41835 -7.18337 -5.93319 -3.24543 1.38700 2.04257 2.67703 2.72708 3.14299 3.32753 3.39133 3.40471 3.78618 4.12806 4.34686 4.42180 4.46165 4.62809 4.71534 4.79626 4.97528 5.02104 5.04563 5.06007 5.08355 5.13803 5.16430 5.29070 5.37637 5.43293 5.48200 5.51150 5.55227 5.56187 5.67887 5.73273 5.77161 5.83120 5.92462 5.94382 6.11896 6.13682 6.17970 6.28503 6.29040 6.40226 6.47160 6.54018 6.61222 6.78383 7.54923 7.71468 7.93253 8.23288 8.27212 9.36122 9.89513 10.24388 11.28377 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.002204 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.979464 B =12702.336611 C =14004.789758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.217 3.783 3 N -0.546 5.546 4 C 0.280 3.720 5 C -0.080 4.080 6 N -0.374 5.374 7 C 0.126 3.874 8 C -0.117 4.117 9 C -0.134 4.134 10 C 0.527 3.473 11 O -0.555 6.555 12 N -0.612 5.612 13 C 0.113 3.887 14 C -0.113 4.113 15 H 0.083 0.917 16 C -0.133 4.133 17 C 0.177 3.823 18 H 0.066 0.934 19 N -0.711 5.711 20 C -0.250 4.250 21 H 0.072 0.928 22 C -0.007 4.007 23 N -0.928 5.928 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.071 3.929 29 N -0.318 5.318 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.387 0.613 48 H 0.257 0.743 49 H 0.059 0.941 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.426 7.740 0.251 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 N -0.275 5.275 4 C 0.004 3.996 5 C -0.139 4.139 6 N -0.164 5.164 7 C 0.004 3.996 8 C -0.156 4.156 9 C -0.174 4.174 10 C 0.315 3.685 11 O -0.435 6.435 12 N -0.346 5.346 13 C -0.010 4.010 14 C -0.133 4.133 15 H 0.102 0.898 16 C -0.191 4.191 17 C 0.065 3.935 18 H 0.084 0.916 19 N -0.351 5.351 20 C -0.380 4.380 21 H 0.090 0.910 22 C -0.204 4.204 23 N -0.575 5.575 24 Si 0.738 3.262 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.055 4.055 29 N -0.147 5.147 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.222 0.778 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.085 7.409 0.561 19.552 hybrid contribution 0.901 -0.460 -0.873 1.336 sum -17.184 6.949 -0.312 18.539 Atomic orbital electron populations 1.20066 0.84012 1.03953 1.03555 1.24266 0.98236 0.85808 0.98232 1.70343 0.99874 1.30986 1.26336 1.24362 0.95290 0.83937 0.96049 1.20431 0.91421 0.97556 1.04496 1.50326 1.05910 1.05507 1.54654 1.21906 0.82512 0.96286 0.98935 1.21685 0.97751 1.01467 0.94710 1.21515 0.98592 1.02167 0.95136 1.20143 0.79439 0.77693 0.91199 1.90684 1.53542 1.52533 1.46695 1.48561 1.26411 1.50520 1.09059 1.22253 0.93713 1.00150 0.84843 1.22664 0.93891 1.00058 0.96719 0.89842 1.21604 1.02108 0.98467 0.96923 1.21287 0.86586 0.96675 0.88984 0.91595 1.42346 1.16165 1.37069 1.39538 1.19225 1.01463 1.08502 1.08849 0.90978 1.24769 0.97048 0.98633 0.99978 1.69654 1.11490 1.32667 1.43731 0.86198 0.77621 0.80243 0.82129 1.21607 1.21700 1.20651 1.23368 0.92609 0.97852 0.91647 1.78019 0.86787 1.22635 1.27268 0.90006 0.90081 0.89673 0.89004 0.88399 0.89659 0.88083 0.88061 0.90140 0.90507 0.88264 0.88432 0.91006 0.91689 0.92773 0.91409 0.93159 0.77848 0.93297 0.92240 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 36.01 0.38 -0.08 16 2 C 0.22 2.70 8.14 -156.85 -1.28 1.42 16 3 N -0.55 -7.06 11.19 -8.16 -0.09 -7.15 16 4 C 0.28 3.10 7.98 -155.70 -1.24 1.86 16 5 C -0.08 -0.54 10.01 36.01 0.36 -0.18 16 6 N -0.37 -4.30 3.64 -58.34 -0.21 -4.51 16 7 C 0.13 1.08 6.13 -4.04 -0.02 1.06 16 8 C -0.12 -1.21 4.83 -26.73 -0.13 -1.33 16 9 C -0.13 -1.39 4.89 -27.89 -0.14 -1.53 16 10 C 0.53 7.71 7.85 -10.99 -0.09 7.62 16 11 O -0.56 -9.91 16.24 5.56 0.09 -9.82 16 12 N -0.61 -9.02 3.33 -170.52 -0.57 -9.59 16 13 C 0.11 1.61 6.38 -2.53 -0.02 1.59 16 14 C -0.11 -1.68 3.26 -88.33 -0.29 -1.97 16 15 H 0.08 1.32 8.01 -51.93 -0.42 0.90 16 16 C -0.13 -1.78 9.30 37.16 0.35 -1.44 16 17 C 0.18 3.07 3.08 -65.96 -0.20 2.86 16 18 H 0.07 1.17 8.00 -51.93 -0.42 0.75 16 19 N -0.71 -15.77 5.18 -51.52 -0.27 -16.03 16 20 C -0.25 -6.25 9.98 -15.06 -0.15 -6.40 16 21 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.93 -26.09 13.06 55.49 0.72 -25.36 16 24 Si 0.91 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.07 1.10 6.23 -3.07 -0.02 1.08 16 29 N -0.32 -4.28 12.70 32.42 0.41 -3.87 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.47 7.76 -51.93 -0.40 0.07 16 36 H 0.10 0.60 7.72 -51.93 -0.40 0.20 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.03 8.04 -51.93 -0.42 0.62 16 43 H 0.06 0.87 8.04 -51.93 -0.42 0.46 16 44 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.39 9.28 7.72 -40.82 -0.32 8.96 16 48 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 49 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.07 1.23 8.03 -51.93 -0.42 0.82 16 LS Contribution 413.57 15.07 6.23 6.23 Total: -1.00 -33.27 413.57 -9.95 -43.22 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -8.66 Total: 6.76 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.58 Total: 4.28 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: 0.00 Total: -66.52 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.27 -9.95 -43.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216323829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.190 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds