Wall clock time and date at job start Tue Mar 31 2020 18:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33244 * 125.52871 * 2 1 4 4 C 1.30822 * 109.83154 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.96172 * 179.97438 * 4 3 2 6 6 N 1.34431 * 108.07969 * 359.97438 * 4 3 2 7 7 C 1.46502 * 126.82694 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47274 * 89.99535 * 7 6 4 9 9 C 1.53000 * 109.47222 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.47301 * 180.02562 * 9 8 7 11 11 O 1.21275 * 119.99961 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99872 * 179.97438 * 10 9 8 13 13 C 1.47426 * 125.64500 * 179.97438 * 12 10 9 14 14 C 1.54914 * 104.82992 * 204.16642 * 13 12 10 15 15 H 1.09004 * 111.00278 * 81.10732 * 14 13 12 16 16 C 1.53000 * 111.00205 * 204.91932 * 14 13 12 17 17 C 1.55405 * 101.66697 * 323.07703 * 14 13 12 18 18 H 1.09000 * 110.69068 * 277.04987 * 17 14 13 19 19 N 1.46495 * 110.85076 * 153.69955 * 17 14 13 20 20 C 1.36934 * 119.99717 * 160.08604 * 19 17 14 21 21 H 1.08002 * 120.00471 * 359.97438 * 20 19 17 22 22 C 1.38816 * 119.99836 * 180.02562 * 20 19 17 23 23 N 1.31613 * 120.00160 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99860 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47550 * 89.99710 * 24 22 20 26 26 H 1.48503 * 109.46790 * 209.99816 * 24 22 20 27 27 H 1.48504 * 109.47100 * 329.99312 * 24 22 20 28 28 C 1.47018 * 125.64981 * 0.02817 * 12 10 9 29 29 N 1.30711 * 125.52718 * 180.28211 * 2 1 3 30 30 H 1.08998 * 109.47109 * 89.97772 * 1 2 3 31 31 H 1.09009 * 109.46854 * 209.97592 * 1 2 3 32 32 H 1.08994 * 109.47092 * 329.97419 * 1 2 3 33 33 H 1.09007 * 109.46615 * 270.03512 * 5 4 3 34 34 H 1.08999 * 109.47285 * 30.03266 * 5 4 3 35 35 H 1.09002 * 109.47398 * 150.04262 * 5 4 3 36 36 H 1.09001 * 109.46589 * 329.99924 * 7 6 4 37 37 H 1.08998 * 109.47136 * 210.00205 * 7 6 4 38 38 H 1.09005 * 109.46799 * 60.00170 * 8 7 6 39 39 H 1.08998 * 109.47586 * 300.00394 * 8 7 6 40 40 H 1.08997 * 109.46786 * 59.99835 * 9 8 7 41 41 H 1.09007 * 109.46838 * 300.00612 * 9 8 7 42 42 H 1.08999 * 110.36956 * 323.01018 * 13 12 10 43 43 H 1.09001 * 110.36709 * 85.22211 * 13 12 10 44 44 H 1.08997 * 109.47294 * 58.54570 * 16 14 13 45 45 H 1.08997 * 109.47279 * 178.55250 * 16 14 13 46 46 H 1.09006 * 109.47100 * 298.55044 * 16 14 13 47 47 H 0.96997 * 120.00433 * 340.08762 * 19 17 14 48 48 H 0.97005 * 120.00291 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.88241 * 298.32048 * 28 12 10 50 50 H 1.09000 * 109.88049 * 59.33177 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5407 0.7304 0.0006 5 6 4.7227 1.6653 0.0002 6 7 3.5966 -0.6127 0.0015 7 6 4.8048 -1.4414 0.0018 8 6 5.2258 -1.7287 1.4444 9 6 6.4879 -2.5936 1.4448 10 6 6.9022 -2.8771 2.8656 11 8 6.2517 -2.4318 3.7873 12 7 7.9949 -3.6265 3.1121 13 6 8.5114 -3.9795 4.4471 14 6 10.0170 -4.2691 4.2260 15 1 10.5918 -3.3436 4.1908 16 6 10.5594 -5.2074 5.3059 17 6 10.0023 -4.9664 2.8372 18 1 9.7677 -6.0258 2.9407 19 7 11.2815 -4.7822 2.1476 20 6 11.6371 -5.6241 1.1279 21 1 10.9746 -6.4242 0.8322 22 6 12.8495 -5.4498 0.4747 23 7 13.6571 -4.4751 0.8352 24 14 13.3342 -6.5979 -0.9168 25 1 12.8440 -6.0477 -2.2061 26 1 14.8132 -6.7233 -0.9626 27 1 12.7309 -7.9354 -0.6880 28 6 8.8700 -4.2264 2.0944 29 7 2.2666 -1.0638 -0.0052 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3633 0.8897 0.5142 33 1 5.0075 1.8904 -1.0277 34 1 4.4557 2.5889 0.5138 35 1 5.5600 1.1927 0.5139 36 1 5.6076 -0.9132 -0.5126 37 1 4.6009 -2.3811 -0.5113 38 1 4.4228 -2.2568 1.9589 39 1 5.4296 -0.7889 1.9576 40 1 7.2905 -2.0651 0.9305 41 1 6.2844 -3.5334 0.9315 42 1 8.3827 -3.1451 5.1365 43 1 8.0047 -4.8664 4.8275 44 1 9.9967 -6.1409 5.2923 45 1 11.6118 -5.4146 5.1122 46 1 10.4559 -4.7352 6.2829 47 1 11.8767 -4.0638 2.4133 48 1 14.5042 -4.3531 0.3786 49 1 8.3027 -4.9314 1.4867 50 1 9.2907 -3.4457 1.4606 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216323829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:29 Heat of formation + Delta-G solvation = 29.028409 kcal Electronic energy + Delta-G solvation = -28473.184396 eV Core-core repulsion = 24536.115274 eV Total energy + Delta-G solvation = -3937.069122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.15089 -41.17581 -39.07679 -36.78963 -35.82895 -34.23940 -33.86926 -33.21146 -32.45561 -30.52037 -29.45467 -29.07819 -27.94577 -26.45455 -25.79616 -23.59894 -22.71642 -21.73774 -21.44985 -21.36283 -20.14927 -19.04831 -18.28439 -17.63275 -17.44250 -16.95307 -16.78073 -16.50726 -15.84167 -15.55411 -15.33441 -15.28107 -14.71115 -14.61005 -14.39889 -14.35469 -14.09377 -13.96680 -13.87508 -13.60533 -13.43143 -13.33157 -13.16847 -13.02474 -12.96313 -12.84511 -12.81271 -12.74898 -12.57113 -12.17944 -12.13322 -12.01933 -11.89976 -11.66082 -11.40997 -11.08629 -11.01678 -10.87410 -10.74123 -10.32188 -9.64837 -9.03095 -7.91644 -5.21014 0.55866 1.30176 1.52241 1.53461 1.58327 1.60895 1.83061 2.01436 2.59080 3.11107 3.33662 3.40596 3.42581 3.69821 3.70577 3.81073 3.88292 3.91234 3.94041 4.16628 4.24141 4.30227 4.34845 4.39982 4.48459 4.50487 4.57245 4.62862 4.63051 4.70452 4.71037 4.79541 4.87916 4.90450 4.92948 4.93860 4.99374 5.10559 5.12698 5.16752 5.26674 5.33093 5.34035 5.48722 5.49649 5.58832 5.87826 6.28876 6.52765 7.08750 7.10428 7.37173 8.08885 8.32642 9.31031 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.002204 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.979464 B =12702.336611 C =14004.789758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.204 3.796 3 N -0.576 5.576 4 C 0.275 3.725 5 C -0.079 4.079 6 N -0.381 5.381 7 C 0.126 3.874 8 C -0.104 4.104 9 C -0.125 4.125 10 C 0.521 3.479 11 O -0.591 6.591 12 N -0.613 5.613 13 C 0.115 3.885 14 C -0.104 4.104 15 H 0.071 0.929 16 C -0.129 4.129 17 C 0.169 3.831 18 H 0.068 0.932 19 N -0.721 5.721 20 C -0.237 4.237 21 H 0.081 0.919 22 C -0.070 4.070 23 N -0.966 5.966 24 Si 0.966 3.034 25 H -0.287 1.287 26 H -0.302 1.302 27 H -0.270 1.270 28 C 0.085 3.915 29 N -0.354 5.354 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.375 0.625 48 H 0.250 0.750 49 H 0.075 0.925 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.177 7.391 -0.512 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.078 4.078 3 N -0.306 5.306 4 C 0.000 4.000 5 C -0.138 4.138 6 N -0.171 5.171 7 C 0.005 3.995 8 C -0.143 4.143 9 C -0.165 4.165 10 C 0.312 3.688 11 O -0.473 6.473 12 N -0.346 5.346 13 C -0.008 4.008 14 C -0.123 4.123 15 H 0.090 0.910 16 C -0.186 4.186 17 C 0.059 3.941 18 H 0.086 0.914 19 N -0.360 5.360 20 C -0.369 4.369 21 H 0.099 0.901 22 C -0.262 4.262 23 N -0.616 5.616 24 Si 0.796 3.204 25 H -0.214 1.214 26 H -0.230 1.230 27 H -0.195 1.195 28 C -0.040 4.040 29 N -0.183 5.183 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.153 0.847 37 H 0.126 0.874 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.208 0.792 48 H 0.059 0.941 49 H 0.093 0.907 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.880 7.028 -0.192 20.146 hybrid contribution 1.072 -0.343 -0.529 1.244 sum -17.807 6.685 -0.721 19.034 Atomic orbital electron populations 1.20211 0.81812 1.04695 1.04699 1.24996 0.99798 0.85572 0.97454 1.70365 1.00923 1.31641 1.27696 1.25149 0.95960 0.84372 0.94545 1.20642 0.90181 0.96879 1.06064 1.50484 1.05888 1.06002 1.54703 1.22092 0.82511 0.97039 0.97893 1.21505 0.96720 1.00494 0.95582 1.21542 0.99075 1.03386 0.92530 1.20862 0.78689 0.76696 0.92560 1.90673 1.54526 1.53801 1.48263 1.48613 1.26437 1.50565 1.08990 1.22257 0.93030 1.00619 0.84870 1.22559 0.94432 0.99544 0.95801 0.91024 1.21568 1.00821 0.98807 0.97436 1.21474 0.85205 0.97294 0.90142 0.91442 1.42452 1.17764 1.36349 1.39445 1.19596 1.00912 1.08061 1.08285 0.90094 1.25469 0.97680 1.00392 1.02695 1.69799 1.11780 1.34758 1.45311 0.85253 0.76410 0.79062 0.79674 1.21442 1.22958 1.19484 1.23018 0.92077 0.97651 0.91276 1.77934 0.87963 1.23738 1.28710 0.88566 0.89387 0.88813 0.86945 0.87998 0.88179 0.84731 0.87352 0.93059 0.91490 0.86017 0.86519 0.91161 0.90485 0.91722 0.93349 0.91079 0.79215 0.94146 0.90664 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.51 71.24 0.75 -0.12 16 2 C 0.20 5.05 8.14 138.63 1.13 6.17 16 3 N -0.58 -14.66 11.19 -179.73 -2.01 -16.67 16 4 C 0.28 5.81 7.98 138.23 1.10 6.91 16 5 C -0.08 -0.90 10.01 71.24 0.71 -0.19 16 6 N -0.38 -8.37 3.64 -338.49 -1.23 -9.60 16 7 C 0.13 1.89 6.13 86.38 0.53 2.42 16 8 C -0.10 -1.99 4.83 30.59 0.15 -1.85 16 9 C -0.13 -2.30 4.89 29.85 0.15 -2.15 16 10 C 0.52 14.42 7.85 87.66 0.69 15.11 16 11 O -0.59 -20.69 16.24 -3.01 -0.05 -20.74 16 12 N -0.61 -16.91 3.33 -811.80 -2.70 -19.61 16 13 C 0.12 3.07 6.38 86.86 0.55 3.62 16 14 C -0.10 -2.94 3.26 -9.31 -0.03 -2.97 16 15 H 0.07 2.23 8.01 -2.39 -0.02 2.21 16 16 C -0.13 -3.25 9.30 71.98 0.67 -2.58 16 17 C 0.17 5.61 3.08 46.27 0.14 5.75 16 18 H 0.07 2.25 8.00 -2.39 -0.02 2.23 16 19 N -0.72 -31.52 5.18 -316.92 -1.64 -33.16 16 20 C -0.24 -11.61 9.98 84.03 0.84 -10.77 16 21 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 22 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 23 N -0.97 -54.93 13.06 21.65 0.28 -54.64 16 24 Si 0.97 42.67 29.55 68.60 2.03 44.69 16 25 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 26 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 C 0.09 2.45 6.23 86.73 0.54 2.99 16 29 N -0.35 -9.47 12.70 -51.33 -0.65 -10.12 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 0.84 7.76 -2.39 -0.02 0.82 16 36 H 0.13 1.12 7.72 -2.39 -0.02 1.10 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.29 8.10 -2.38 -0.02 1.27 16 39 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 40 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 43 H 0.08 1.89 8.04 -2.39 -0.02 1.88 16 44 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 45 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.38 18.11 7.72 -92.71 -0.72 17.40 16 48 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 49 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.07 2.06 8.03 -2.39 -0.02 2.04 16 Total: -1.00 -72.83 413.57 2.62 -70.21 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.21 Total: 30.50 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 8.39 Total: 19.15 kcal Atomic # 7 Polarization: -135.86 SS G_CDS: -7.95 Total: -143.81 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -72.83 2.62 -70.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216323829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.238 kcal (2) G-P(sol) polarization free energy of solvation -72.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds