Wall clock time and date at job start Tue Mar 31 2020 20:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47070 * 2 1 4 4 C 1.53007 * 109.47273 * 119.99762 * 2 1 3 5 5 N 1.46503 * 109.46869 * 65.00030 * 4 2 1 6 6 C 1.46009 * 118.53785 * 270.02053 * 5 4 2 7 7 C 1.52990 * 110.04122 * 161.81800 * 6 5 4 8 8 N 1.47190 * 108.71514 * 50.30613 * 7 6 5 9 9 C 1.38594 * 110.99830 * 167.62077 * 8 7 6 10 10 N 1.31216 * 126.46994 * 358.91030 * 9 8 7 11 11 N 1.28527 * 109.85402 * 179.97438 * 10 9 8 12 12 C 1.30292 * 110.05794 * 0.02562 * 11 10 9 13 13 C 1.50706 * 126.34831 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46953 * 90.02203 * 13 12 11 15 15 C 1.50706 * 109.46573 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00167 * 359.72054 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99430 * 19 17 15 21 21 H 1.48494 * 109.47031 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99678 * 19 17 15 23 23 N 1.36449 * 126.46931 * 179.22640 * 9 8 7 24 24 C 1.46501 * 127.14121 * 359.97438 * 23 9 8 25 25 C 1.46898 * 110.17387 * 290.98378 * 8 7 6 26 26 C 1.33717 * 118.53592 * 89.99779 * 5 4 2 27 27 O 1.21282 * 118.62139 * 1.70969 * 26 5 4 28 28 H 1.08996 * 109.47643 * 60.00312 * 1 2 3 29 29 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47438 * 299.99583 * 1 2 3 31 31 H 1.08997 * 109.46966 * 240.00025 * 2 1 3 32 32 H 1.09000 * 109.46869 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46954 * 299.99637 * 3 2 1 34 34 H 1.08997 * 109.47206 * 60.00172 * 3 2 1 35 35 H 1.08998 * 109.47194 * 305.00422 * 4 2 1 36 36 H 1.08993 * 109.46887 * 184.99536 * 4 2 1 37 37 H 1.08993 * 109.37281 * 281.99525 * 6 5 4 38 38 H 1.09006 * 109.37120 * 41.75879 * 6 5 4 39 39 H 1.09001 * 109.61316 * 290.52888 * 7 6 5 40 40 H 1.09000 * 109.59011 * 170.06741 * 7 6 5 41 41 H 1.09000 * 109.46974 * 330.01952 * 13 12 11 42 42 H 1.09001 * 109.46547 * 210.02042 * 13 12 11 43 43 H 1.09000 * 109.47486 * 60.00062 * 14 13 12 44 44 H 1.09001 * 109.47362 * 299.99339 * 14 13 12 45 45 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.46986 * 270.19810 * 24 23 9 47 47 H 1.09000 * 109.47120 * 30.20280 * 24 23 9 48 48 H 1.08999 * 109.46802 * 150.19713 * 24 23 9 49 49 H 1.09008 * 109.38737 * 170.45480 * 25 8 7 50 50 H 1.09002 * 109.39237 * 290.24493 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.3717 -2.5292 1.7690 7 6 -0.0484 -3.8962 1.2254 8 7 1.0783 -4.8311 1.3767 9 6 0.6713 -6.1383 1.1611 10 7 -0.5459 -6.5399 0.8801 11 7 -0.5633 -7.8178 0.7436 12 6 0.6317 -8.3033 0.9283 13 6 1.0270 -9.7557 0.8544 14 6 1.4388 -10.0997 -0.5784 15 6 1.8347 -11.5520 -0.6522 16 1 1.8008 -12.1667 0.2351 17 6 2.2453 -12.0944 -1.8515 18 7 2.5913 -13.3616 -1.9157 19 14 2.3115 -11.0292 -3.3846 20 1 3.6529 -10.4015 -3.4938 21 1 2.0592 -11.8697 -4.5825 22 1 1.2749 -9.9696 -3.2961 23 7 1.4595 -7.2511 1.2068 24 6 2.8957 -7.3068 1.4908 25 6 2.1688 -4.4621 0.4644 26 6 2.4872 -3.0008 0.6094 27 8 3.5458 -2.5915 0.1819 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2951 37 1 0.4663 -2.5846 2.8533 38 1 -0.3864 -1.7901 1.5094 39 1 -0.3097 -3.8061 0.1710 40 1 -0.9070 -4.2645 1.7869 41 1 0.1818 -10.3777 1.1489 42 1 1.8648 -9.9388 1.5271 43 1 2.2840 -9.4776 -0.8730 44 1 0.6010 -9.9166 -1.2512 45 1 2.8805 -13.7432 -2.7594 46 1 3.4540 -7.2151 0.5592 47 1 3.1660 -6.4888 2.1586 48 1 3.1354 -8.2581 1.9660 49 1 3.0548 -5.0508 0.7027 50 1 1.8655 -4.6645 -0.5628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262902655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:49 Heat of formation + Delta-G solvation = 53.861363 kcal Electronic energy + Delta-G solvation = -29711.974269 eV Core-core repulsion = 25775.981985 eV Total energy + Delta-G solvation = -3935.992284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -42.89265 -41.03431 -37.83202 -37.18792 -35.12641 -34.55394 -33.75879 -31.91521 -30.44189 -29.75640 -28.06188 -27.62949 -27.22194 -25.71493 -25.02079 -24.18983 -21.60216 -21.15671 -20.67645 -20.04725 -19.10587 -17.79450 -17.48898 -16.97745 -16.67779 -16.33893 -16.11590 -15.75185 -15.30102 -15.00849 -14.80418 -14.33471 -14.02740 -13.96927 -13.54474 -13.40291 -13.36499 -13.20956 -12.99492 -12.88943 -12.69327 -12.64598 -12.32734 -12.10191 -11.88639 -11.70661 -11.64142 -11.37626 -11.29044 -11.13108 -11.11045 -10.65662 -10.49568 -10.28110 -10.13732 -10.02544 -9.87444 -9.66054 -9.33785 -9.10413 -8.62651 -8.23004 -6.13171 -4.12892 1.80636 2.15728 2.25769 2.50917 2.98593 3.24560 3.34021 3.37759 3.38741 3.95175 4.23704 4.37983 4.38749 4.41101 4.49075 4.61208 4.68146 4.75507 4.78310 4.85233 4.85910 5.00956 5.06320 5.10870 5.17513 5.20713 5.21960 5.22934 5.31803 5.36497 5.39859 5.45217 5.50579 5.52546 5.69374 5.79044 5.82557 5.85023 6.03814 6.14201 6.19892 6.27214 6.40461 6.64674 6.94249 7.05997 7.12346 7.24348 7.65215 7.69494 8.40550 8.89884 8.95411 9.48391 10.99640 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.002547 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.540843 B =10990.471211 C =11564.027678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.114 3.886 5 N -0.600 5.600 6 C 0.109 3.891 7 C 0.052 3.948 8 N -0.440 5.440 9 C 0.327 3.673 10 N -0.315 5.315 11 N -0.291 5.291 12 C 0.213 3.787 13 C -0.023 4.023 14 C -0.004 4.004 15 C -0.524 4.524 16 H 0.076 0.924 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.876 3.124 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.265 1.265 23 N -0.481 5.481 24 C 0.071 3.929 25 C 0.032 3.968 26 C 0.529 3.471 27 O -0.541 6.541 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.008 0.992 44 H 0.025 0.975 45 H 0.265 0.735 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.120 0.880 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 28.526 9.089 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.133 4.133 3 C -0.202 4.202 4 C -0.009 4.009 5 N -0.332 5.332 6 C -0.014 4.014 7 C -0.076 4.076 8 N -0.166 5.166 9 C -0.029 4.029 10 N -0.160 5.160 11 N -0.129 5.129 12 C -0.054 4.054 13 C -0.062 4.062 14 C -0.042 4.042 15 C -0.561 4.561 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.703 3.297 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.190 1.190 23 N -0.175 5.175 24 C -0.072 4.072 25 C -0.098 4.098 26 C 0.316 3.684 27 O -0.417 6.417 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.027 0.973 44 H 0.044 0.956 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.119 0.881 49 H 0.137 0.863 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.405 28.699 8.966 30.163 hybrid contribution 1.260 0.301 -1.323 1.852 sum -1.145 29.000 7.643 30.012 Atomic orbital electron populations 1.22018 0.95066 1.01961 1.01983 1.21497 0.96189 0.96600 0.98976 1.21757 1.01303 0.95158 1.01966 1.21641 1.01906 0.79454 0.97853 1.47445 1.19778 1.08357 1.57633 1.21857 0.85084 0.95469 0.98950 1.22488 0.92789 0.89779 1.02498 1.59186 1.10377 0.97447 1.49544 1.22330 0.88936 0.86542 1.05128 1.74506 1.15394 1.05722 1.20409 1.74026 1.18238 1.01022 1.19629 1.25626 0.86234 0.93424 1.00155 1.20265 1.02153 0.82254 1.01567 1.19547 0.96291 0.97754 0.90630 1.20996 1.44937 0.93147 0.97067 0.90561 1.24964 0.94512 0.94811 0.98776 1.69897 1.44891 1.12325 1.26529 0.86839 0.78855 0.80943 0.83078 1.20331 1.21123 1.18982 1.46108 1.10692 1.06139 1.54592 1.22186 0.76484 1.05492 1.03021 1.22599 0.96192 0.94025 0.97001 1.19729 0.83744 0.87394 0.77516 1.90757 1.23864 1.78347 1.48746 0.92529 0.92186 0.92473 0.90810 0.92377 0.92367 0.92529 0.90247 0.89350 0.90293 0.88608 0.91850 0.86552 0.88521 0.90498 0.97334 0.95640 0.92557 0.89998 0.89216 0.88147 0.86255 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.20 37.16 0.30 -0.54 16 2 C -0.11 -0.76 3.12 -90.62 -0.28 -1.05 16 3 C -0.14 -0.80 9.19 37.16 0.34 -0.46 16 4 C 0.11 0.81 4.79 -4.04 -0.02 0.79 16 5 N -0.60 -5.01 2.67 -174.58 -0.47 -5.47 16 6 C 0.11 0.70 5.96 -4.31 -0.03 0.67 16 7 C 0.05 0.46 5.12 -3.67 -0.02 0.45 16 8 N -0.44 -4.94 4.78 -175.90 -0.84 -5.78 16 9 C 0.33 4.82 7.17 -318.86 -2.29 2.54 16 10 N -0.32 -5.55 11.10 30.32 0.34 -5.21 16 11 N -0.29 -5.74 12.18 32.99 0.40 -5.34 16 12 C 0.21 3.84 7.32 -154.01 -1.13 2.72 16 13 C -0.02 -0.42 5.53 -27.88 -0.15 -0.58 16 14 C 0.00 -0.08 4.02 -27.88 -0.11 -0.20 16 15 C -0.52 -14.20 9.66 -34.44 -0.33 -14.53 16 16 H 0.08 2.18 7.99 -52.49 -0.42 1.77 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 19 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 23 N -0.48 -7.19 3.21 -121.45 -0.39 -7.58 16 24 C 0.07 0.78 9.39 59.85 0.56 1.34 16 25 C 0.03 0.35 5.27 -5.19 -0.03 0.32 16 26 C 0.53 5.88 7.56 -11.67 -0.09 5.79 16 27 O -0.54 -7.67 16.30 5.56 0.09 -7.58 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.35 5.65 -51.93 -0.29 0.06 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.40 8.03 -51.93 -0.42 -0.02 16 36 H 0.09 0.77 7.21 -51.93 -0.37 0.40 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.42 5.38 -51.93 -0.28 0.15 16 39 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 40 H 0.12 1.07 7.66 -51.93 -0.40 0.67 16 41 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 42 H 0.08 1.29 7.26 -51.93 -0.38 0.91 16 43 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 44 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.08 0.85 7.96 -51.93 -0.41 0.43 16 47 H 0.09 0.79 7.51 -51.93 -0.39 0.40 16 48 H 0.10 1.02 7.25 -51.93 -0.38 0.64 16 49 H 0.12 1.23 5.70 -51.92 -0.30 0.94 16 50 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -34.38 392.18 -10.41 -44.79 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -8.19 Total: -3.54 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.37 Total: -0.82 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.18 Total: -55.54 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.09 Total: -7.58 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.38 -10.41 -44.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262902655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.650 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds