Wall clock time and date at job start Tue Mar 31 2020 20:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47070 * 2 1 4 4 C 1.53007 * 109.47273 * 119.99762 * 2 1 3 5 5 N 1.46503 * 109.46869 * 65.00030 * 4 2 1 6 6 C 1.46009 * 118.53785 * 270.02053 * 5 4 2 7 7 C 1.52990 * 110.04122 * 161.81800 * 6 5 4 8 8 N 1.47190 * 108.71514 * 50.30613 * 7 6 5 9 9 C 1.38594 * 110.99830 * 167.62077 * 8 7 6 10 10 N 1.31216 * 126.46994 * 358.91030 * 9 8 7 11 11 N 1.28527 * 109.85402 * 179.97438 * 10 9 8 12 12 C 1.30292 * 110.05794 * 0.02562 * 11 10 9 13 13 C 1.50706 * 126.34831 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46953 * 90.02203 * 13 12 11 15 15 C 1.50706 * 109.46573 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00167 * 359.72054 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99430 * 19 17 15 21 21 H 1.48494 * 109.47031 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99678 * 19 17 15 23 23 N 1.36449 * 126.46931 * 179.22640 * 9 8 7 24 24 C 1.46501 * 127.14121 * 359.97438 * 23 9 8 25 25 C 1.46898 * 110.17387 * 290.98378 * 8 7 6 26 26 C 1.33717 * 118.53592 * 89.99779 * 5 4 2 27 27 O 1.21282 * 118.62139 * 1.70969 * 26 5 4 28 28 H 1.08996 * 109.47643 * 60.00312 * 1 2 3 29 29 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47438 * 299.99583 * 1 2 3 31 31 H 1.08997 * 109.46966 * 240.00025 * 2 1 3 32 32 H 1.09000 * 109.46869 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46954 * 299.99637 * 3 2 1 34 34 H 1.08997 * 109.47206 * 60.00172 * 3 2 1 35 35 H 1.08998 * 109.47194 * 305.00422 * 4 2 1 36 36 H 1.08993 * 109.46887 * 184.99536 * 4 2 1 37 37 H 1.08993 * 109.37281 * 281.99525 * 6 5 4 38 38 H 1.09006 * 109.37120 * 41.75879 * 6 5 4 39 39 H 1.09001 * 109.61316 * 290.52888 * 7 6 5 40 40 H 1.09000 * 109.59011 * 170.06741 * 7 6 5 41 41 H 1.09000 * 109.46974 * 330.01952 * 13 12 11 42 42 H 1.09001 * 109.46547 * 210.02042 * 13 12 11 43 43 H 1.09000 * 109.47486 * 60.00062 * 14 13 12 44 44 H 1.09001 * 109.47362 * 299.99339 * 14 13 12 45 45 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.46986 * 270.19810 * 24 23 9 47 47 H 1.09000 * 109.47120 * 30.20280 * 24 23 9 48 48 H 1.08999 * 109.46802 * 150.19713 * 24 23 9 49 49 H 1.09008 * 109.38737 * 170.45480 * 25 8 7 50 50 H 1.09002 * 109.39237 * 290.24493 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.3717 -2.5292 1.7690 7 6 -0.0484 -3.8962 1.2254 8 7 1.0783 -4.8311 1.3767 9 6 0.6713 -6.1383 1.1611 10 7 -0.5459 -6.5399 0.8801 11 7 -0.5633 -7.8178 0.7436 12 6 0.6317 -8.3033 0.9283 13 6 1.0270 -9.7557 0.8544 14 6 1.4388 -10.0997 -0.5784 15 6 1.8347 -11.5520 -0.6522 16 1 1.8008 -12.1667 0.2351 17 6 2.2453 -12.0944 -1.8515 18 7 2.5913 -13.3616 -1.9157 19 14 2.3115 -11.0292 -3.3846 20 1 3.6529 -10.4015 -3.4938 21 1 2.0592 -11.8697 -4.5825 22 1 1.2749 -9.9696 -3.2961 23 7 1.4595 -7.2511 1.2068 24 6 2.8957 -7.3068 1.4908 25 6 2.1688 -4.4621 0.4644 26 6 2.4872 -3.0008 0.6094 27 8 3.5458 -2.5915 0.1819 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2951 37 1 0.4663 -2.5846 2.8533 38 1 -0.3864 -1.7901 1.5094 39 1 -0.3097 -3.8061 0.1710 40 1 -0.9070 -4.2645 1.7869 41 1 0.1818 -10.3777 1.1489 42 1 1.8648 -9.9388 1.5271 43 1 2.2840 -9.4776 -0.8730 44 1 0.6010 -9.9166 -1.2512 45 1 2.8805 -13.7432 -2.7594 46 1 3.4540 -7.2151 0.5592 47 1 3.1660 -6.4888 2.1586 48 1 3.1354 -8.2581 1.9660 49 1 3.0548 -5.0508 0.7027 50 1 1.8655 -4.6645 -0.5628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262902655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:47 Heat of formation + Delta-G solvation = 33.745292 kcal Electronic energy + Delta-G solvation = -29712.846568 eV Core-core repulsion = 25775.981985 eV Total energy + Delta-G solvation = -3936.864583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -44.13118 -41.85053 -38.76434 -37.87374 -36.46303 -35.76220 -34.92609 -33.74025 -31.20657 -31.04208 -29.21775 -28.24221 -27.99234 -27.20742 -25.90557 -24.99877 -23.32301 -22.23356 -21.55417 -21.16893 -19.89301 -19.09830 -18.65699 -18.28572 -17.62644 -17.30647 -17.15125 -16.67755 -16.34057 -16.14731 -15.64000 -15.56144 -15.23425 -15.05657 -14.76419 -14.71750 -14.46572 -14.29329 -13.85104 -13.73564 -13.57140 -13.45276 -13.18203 -12.98435 -12.94872 -12.79498 -12.72621 -12.52889 -12.26373 -12.21246 -12.02408 -11.86580 -11.80703 -11.62691 -11.60810 -11.42414 -11.31107 -11.10962 -10.83781 -10.78059 -9.78313 -9.45834 -8.30983 -6.34511 0.61871 1.12623 1.30605 1.32671 1.35617 1.45408 1.67938 1.79446 2.32585 2.35605 3.04502 3.16862 3.40943 3.55011 3.61336 3.75890 3.83916 3.91329 3.93929 4.03126 4.09920 4.13509 4.19711 4.27698 4.29794 4.49644 4.50937 4.53744 4.58414 4.68311 4.71874 4.76059 4.80296 4.82616 4.88468 4.91754 5.00152 5.03188 5.17624 5.21179 5.25634 5.29234 5.39188 5.41589 5.42559 5.51425 5.60254 5.99581 6.20105 6.23794 6.72982 6.88610 7.30016 7.65664 8.84935 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.002547 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.540843 B =10990.471211 C =11564.027678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.113 3.887 5 N -0.592 5.592 6 C 0.115 3.885 7 C 0.048 3.952 8 N -0.431 5.431 9 C 0.344 3.656 10 N -0.341 5.341 11 N -0.324 5.324 12 C 0.200 3.800 13 C -0.011 4.011 14 C 0.004 3.996 15 C -0.525 4.525 16 H 0.049 0.951 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.938 3.062 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.261 1.261 23 N -0.478 5.478 24 C 0.061 3.939 25 C 0.036 3.964 26 C 0.528 3.472 27 O -0.577 6.577 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.057 0.943 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.019 0.981 44 H 0.009 0.991 45 H 0.267 0.733 46 H 0.090 0.910 47 H 0.114 0.886 48 H 0.109 0.891 49 H 0.126 0.874 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 31.622 10.004 33.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.199 4.199 4 C -0.009 4.009 5 N -0.323 5.323 6 C -0.007 4.007 7 C -0.079 4.079 8 N -0.157 5.157 9 C -0.013 4.013 10 N -0.186 5.186 11 N -0.163 5.163 12 C -0.068 4.068 13 C -0.050 4.050 14 C -0.034 4.034 15 C -0.563 4.563 16 H 0.067 0.933 17 C -0.184 4.184 18 N -0.583 5.583 19 Si 0.763 3.237 20 H -0.188 1.188 21 H -0.210 1.210 22 H -0.186 1.186 23 N -0.172 5.172 24 C -0.080 4.080 25 C -0.094 4.094 26 C 0.315 3.685 27 O -0.457 6.457 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.135 0.865 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.037 0.963 44 H 0.028 0.972 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.132 0.868 48 H 0.128 0.872 49 H 0.144 0.856 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.505 31.831 9.910 33.431 hybrid contribution 1.271 -0.593 -1.514 2.064 sum -1.234 31.238 8.395 32.370 Atomic orbital electron populations 1.22002 0.93777 1.02018 1.02947 1.21440 0.97187 0.96908 0.97449 1.21735 1.00804 0.94478 1.02884 1.21772 1.01158 0.78691 0.99278 1.47535 1.19836 1.08639 1.56299 1.22020 0.84642 0.94411 0.99631 1.22636 0.92223 0.90540 1.02463 1.59330 1.11152 0.96116 1.49066 1.22647 0.88241 0.87699 1.02692 1.74422 1.17053 1.04941 1.22203 1.73935 1.19570 1.02248 1.20507 1.25214 0.86619 0.93485 1.01522 1.19975 1.02620 0.83118 0.99326 1.19380 0.95846 0.95103 0.93106 1.21308 1.43866 0.95062 0.96047 0.93295 1.25805 0.94492 0.95951 1.02128 1.70028 1.46628 1.14194 1.27499 0.85840 0.79494 0.79247 0.79148 1.18776 1.20959 1.18557 1.46243 1.11873 1.05306 1.53764 1.22539 0.74213 1.07119 1.04152 1.22566 0.96126 0.94349 0.96400 1.19703 0.83639 0.87560 0.77591 1.90746 1.25517 1.78810 1.50643 0.92727 0.92507 0.90422 0.93898 0.93207 0.92282 0.90758 0.87129 0.91167 0.88477 0.85862 0.92426 0.86516 0.89280 0.88436 0.96264 0.97230 0.92410 0.89181 0.86780 0.87244 0.85577 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.20 71.98 0.59 -0.66 16 2 C -0.11 -1.30 3.12 -10.79 -0.03 -1.34 16 3 C -0.14 -1.31 9.19 71.98 0.66 -0.65 16 4 C 0.11 1.34 4.79 86.38 0.41 1.75 16 5 N -0.59 -8.52 2.67 -825.23 -2.20 -10.73 16 6 C 0.11 1.08 5.96 86.47 0.52 1.60 16 7 C 0.05 0.76 5.12 86.24 0.44 1.20 16 8 N -0.43 -8.80 4.78 -710.44 -3.39 -12.19 16 9 C 0.34 9.64 7.17 260.11 1.87 11.51 16 10 N -0.34 -11.75 11.10 -58.00 -0.64 -12.40 16 11 N -0.32 -12.71 12.18 -49.53 -0.60 -13.32 16 12 C 0.20 7.07 7.32 137.64 1.01 8.08 16 13 C -0.01 -0.40 5.53 29.85 0.17 -0.23 16 14 C 0.00 0.19 4.02 29.85 0.12 0.31 16 15 C -0.52 -28.77 9.66 25.60 0.25 -28.52 16 16 H 0.05 2.88 7.99 -2.91 -0.02 2.86 16 17 C 0.01 0.80 5.47 84.66 0.46 1.26 16 18 N -0.94 -57.54 13.96 21.45 0.30 -57.24 16 19 Si 0.94 44.14 27.47 68.60 1.88 46.02 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.26 -12.03 6.54 99.48 0.65 -11.38 16 23 N -0.48 -13.49 3.21 -538.16 -1.73 -15.22 16 24 C 0.06 1.18 9.39 127.77 1.20 2.38 16 25 C 0.04 0.72 5.27 85.42 0.45 1.17 16 26 C 0.53 11.04 7.56 87.68 0.66 11.70 16 27 O -0.58 -16.16 16.30 -3.04 -0.05 -16.21 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.51 5.65 -2.39 -0.01 0.49 16 30 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.11 0.65 8.03 -2.39 -0.02 0.63 16 36 H 0.07 1.14 7.21 -2.39 -0.02 1.12 16 37 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.12 0.58 5.38 -2.38 -0.01 0.57 16 39 H 0.06 1.00 8.08 -2.39 -0.02 0.98 16 40 H 0.12 1.90 7.66 -2.39 -0.02 1.88 16 41 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 42 H 0.10 3.15 7.26 -2.39 -0.02 3.14 16 43 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 44 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 45 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 46 H 0.09 1.64 7.96 -2.39 -0.02 1.62 16 47 H 0.11 1.66 7.51 -2.39 -0.02 1.64 16 48 H 0.11 1.95 7.25 -2.39 -0.02 1.94 16 49 H 0.13 2.36 5.70 -2.38 -0.01 2.35 16 50 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 Total: -1.00 -76.04 392.18 3.21 -72.83 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.88 Total: 8.89 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 8.77 Total: 9.57 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -8.27 Total: -121.09 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.05 Total: -16.21 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -76.04 3.21 -72.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262902655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.574 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds