Wall clock time and date at job start Tue Mar 31 2020 18:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36592 * 126.58224 * 2 1 4 4 C 1.47524 * 125.76904 * 0.03600 * 3 2 1 5 5 O 1.21596 * 120.00043 * 353.89823 * 4 3 2 6 6 N 1.34779 * 119.99940 * 173.89829 * 4 3 2 7 7 C 1.46925 * 120.63250 * 5.20101 * 6 4 3 8 8 C 1.53186 * 108.77524 * 233.62833 * 7 6 4 9 9 C 1.53039 * 109.31147 * 305.36354 * 8 7 6 10 10 C 1.53038 * 109.54077 * 61.36416 * 9 8 7 11 11 H 1.08998 * 109.49813 * 178.67968 * 10 9 8 12 12 C 1.53007 * 109.49675 * 58.58487 * 10 9 8 13 13 C 1.46927 * 120.62916 * 185.21592 * 6 4 3 14 14 H 1.09004 * 109.58829 * 246.30265 * 13 6 4 15 15 C 1.53001 * 109.58768 * 6.58667 * 13 6 4 16 16 C 1.52999 * 109.47186 * 178.17522 * 15 13 6 17 17 N 1.46496 * 109.47512 * 174.87781 * 16 15 13 18 18 C 1.36936 * 120.00270 * 180.27698 * 17 16 15 19 19 H 1.07994 * 119.99713 * 359.72831 * 18 17 16 20 20 C 1.38811 * 119.99655 * 179.72234 * 18 17 16 21 21 N 1.31616 * 120.00764 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99687 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47167 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47043 * 120.00283 * 22 20 18 25 25 H 1.48501 * 109.47057 * 240.00124 * 22 20 18 26 26 N 1.34395 * 108.46122 * 179.77168 * 3 2 1 27 27 N 1.28764 * 109.51850 * 0.22814 * 26 3 2 28 28 N 1.34817 * 126.57620 * 180.16423 * 2 1 3 29 29 C 1.46499 * 126.59610 * 359.97438 * 28 2 1 30 30 H 1.08999 * 109.46647 * 89.99900 * 1 2 3 31 31 H 1.08999 * 109.47441 * 210.00548 * 1 2 3 32 32 H 1.09002 * 109.46899 * 330.00370 * 1 2 3 33 33 H 1.09010 * 109.58082 * 353.41544 * 7 6 4 34 34 H 1.08997 * 109.58823 * 113.83630 * 7 6 4 35 35 H 1.09005 * 109.49999 * 65.31568 * 8 7 6 36 36 H 1.08993 * 109.50046 * 185.40841 * 8 7 6 37 37 H 1.09005 * 109.45954 * 181.38954 * 9 8 7 38 38 H 1.09001 * 109.45778 * 301.35366 * 9 8 7 39 39 H 1.08992 * 109.47032 * 300.16759 * 12 10 9 40 40 H 1.09000 * 109.46713 * 60.16463 * 12 10 9 41 41 H 1.08996 * 109.47130 * 180.16102 * 12 10 9 42 42 H 1.09002 * 109.47175 * 58.17900 * 15 13 6 43 43 H 1.08998 * 109.46845 * 298.17759 * 15 13 6 44 44 H 1.09006 * 109.47139 * 54.87474 * 16 15 13 45 45 H 1.08999 * 109.47254 * 294.88340 * 16 15 13 46 46 H 0.97002 * 119.99742 * 0.02562 * 17 16 15 47 47 H 0.96996 * 120.01079 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.46676 * 270.29352 * 29 28 2 49 49 H 1.08997 * 109.47029 * 30.29452 * 29 28 2 50 50 H 1.08997 * 109.46766 * 150.29744 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8739 2.5026 0.0008 5 8 0.6917 2.7646 -0.1105 6 7 2.7756 3.4966 0.1247 7 6 4.2151 3.2032 0.1458 8 6 4.8287 3.8343 1.3995 9 6 4.4909 5.3266 1.4320 10 6 2.9724 5.5065 1.4944 11 1 2.7335 6.5689 1.5412 12 6 2.4257 4.8042 2.7390 13 6 2.3378 4.8943 0.2418 14 1 2.6540 5.4514 -0.6402 15 6 0.8133 4.9459 0.3616 16 6 0.3638 6.3987 0.5289 17 7 -1.0998 6.4611 0.5210 18 6 -1.7345 7.6675 0.6514 19 1 -1.1560 8.5724 0.7646 20 6 -3.1212 7.7272 0.6381 21 7 -3.8262 6.6243 0.5006 22 14 -3.9870 9.3728 0.8168 23 1 -2.9760 10.4514 0.9564 24 1 -4.8191 9.6276 -0.3866 25 1 -4.8542 9.3475 2.0220 26 7 3.5984 0.6788 0.0051 27 7 3.6298 -0.6084 0.0034 28 7 2.3104 -1.0827 -0.0031 29 6 1.8863 -2.4849 -0.0066 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 4.3677 2.1241 0.1678 34 1 4.6866 3.6229 -0.7428 35 1 4.4218 3.3498 2.2871 36 1 5.9109 3.7066 1.3787 37 1 4.9471 5.7832 2.3104 38 1 4.8765 5.8059 0.5321 39 1 2.6664 3.7422 2.6922 40 1 2.8775 5.2402 3.6300 41 1 1.3439 4.9301 2.7816 42 1 0.4971 4.3656 1.2285 43 1 0.3638 4.5279 -0.5391 44 1 0.7575 6.9978 -0.2922 45 1 0.7390 6.7884 1.4752 46 1 -1.6194 5.6483 0.4196 47 1 -4.7952 6.6659 0.4916 48 1 1.7765 -2.8338 1.0202 49 1 0.9317 -2.5744 -0.5249 50 1 2.6354 -3.0897 -0.5176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263953163.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:10 Heat of formation + Delta-G solvation = 96.541404 kcal Electronic energy + Delta-G solvation = -30613.446243 eV Core-core repulsion = 26679.304704 eV Total energy + Delta-G solvation = -3934.141539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.53041 -40.41612 -37.63040 -35.50627 -34.93798 -33.40208 -32.82328 -32.29977 -30.69739 -28.86504 -28.02109 -27.69433 -26.51137 -25.15683 -23.67368 -23.17468 -22.37373 -21.32482 -20.55773 -20.07183 -18.54727 -17.43503 -16.83289 -16.64441 -16.01566 -16.00012 -15.22098 -15.15296 -14.59375 -14.36089 -14.24714 -14.09176 -13.84479 -13.56029 -13.51193 -13.26033 -13.20562 -13.04189 -12.88393 -12.72955 -12.68151 -12.25861 -12.23213 -11.76210 -11.70498 -11.17287 -11.14925 -10.94924 -10.77035 -10.74406 -10.62283 -10.47084 -10.30521 -10.12579 -9.91106 -9.82572 -9.55046 -9.27858 -8.80013 -8.69324 -8.32313 -6.74280 -5.62441 -2.89638 0.91938 1.57770 1.76568 3.03870 3.34397 3.51067 3.56189 3.58729 3.97534 4.04205 4.35951 4.51381 4.56025 4.70489 4.80637 4.83789 4.94271 4.96206 5.03672 5.15230 5.25003 5.28886 5.34539 5.46078 5.55463 5.62602 5.68649 5.74664 5.77322 5.82897 5.86353 5.95590 6.00129 6.12259 6.18597 6.24773 6.28410 6.35654 6.38858 6.41757 6.51744 6.60877 6.69070 6.86149 7.16648 7.30485 7.55279 7.77097 7.82589 8.35134 8.57004 9.67643 10.30451 10.65440 11.60697 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.003270 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.842903 B = 8560.660793 C =10358.690579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.125 3.875 3 C -0.098 4.098 4 C 0.597 3.403 5 O -0.513 6.513 6 N -0.589 5.589 7 C 0.067 3.933 8 C -0.132 4.132 9 C -0.116 4.116 10 C -0.103 4.103 11 H 0.087 0.913 12 C -0.146 4.146 13 C 0.157 3.843 14 H 0.071 0.929 15 C -0.119 4.119 16 C 0.148 3.852 17 N -0.731 5.731 18 C -0.232 4.232 19 H 0.069 0.931 20 C -0.018 4.018 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.293 1.293 26 N -0.206 5.206 27 N -0.075 5.075 28 N -0.364 5.364 29 C 0.087 3.913 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.011 0.989 45 H 0.016 0.984 46 H 0.385 0.615 47 H 0.252 0.748 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.577 -19.052 0.169 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.012 4.012 3 C -0.237 4.237 4 C 0.383 3.617 5 O -0.389 6.389 6 N -0.321 5.321 7 C -0.057 4.057 8 C -0.170 4.170 9 C -0.154 4.154 10 C -0.122 4.122 11 H 0.105 0.895 12 C -0.203 4.203 13 C 0.054 3.946 14 H 0.089 0.911 15 C -0.157 4.157 16 C 0.020 3.980 17 N -0.374 5.374 18 C -0.364 4.364 19 H 0.087 0.913 20 C -0.213 4.213 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.220 1.220 26 N -0.078 5.078 27 N -0.054 5.054 28 N -0.150 5.150 29 C -0.054 4.054 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.134 0.866 33 H 0.158 0.842 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.029 0.971 45 H 0.034 0.966 46 H 0.219 0.781 47 H 0.062 0.938 48 H 0.107 0.893 49 H 0.116 0.884 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 18.400 -19.196 0.129 26.590 hybrid contribution -1.446 0.758 0.084 1.634 sum 16.954 -18.438 0.212 25.049 Atomic orbital electron populations 1.20754 0.84278 1.05614 1.04943 1.21980 0.96401 0.86102 0.96693 1.21467 0.88622 0.95934 1.17679 1.16858 0.85530 0.82123 0.77215 1.90926 1.16201 1.81882 1.49842 1.47858 1.06586 1.06335 1.71292 1.22824 0.79280 1.06149 0.97417 1.21905 1.00235 0.96182 0.98724 1.21593 0.95865 0.96169 1.01760 1.21548 0.94519 1.00878 0.95285 0.89472 1.21879 1.02066 1.00035 0.96354 1.21361 0.96377 0.79765 0.97106 0.91066 1.22305 0.91212 0.97201 1.04943 1.20798 0.86433 0.93663 0.97094 1.42360 0.99737 1.07289 1.88064 1.19295 0.89472 0.86584 1.41038 0.91325 1.24723 0.96289 0.96832 1.03471 1.69684 1.05175 1.25552 1.57814 0.86148 0.79610 0.83516 0.77158 1.20653 1.22006 1.22010 1.73994 1.18858 1.03525 1.11413 1.81966 0.96322 1.03946 1.23148 1.50218 1.06366 1.07776 1.50684 1.22168 1.02502 0.76041 1.04697 0.88750 0.90738 0.86596 0.84173 0.92091 0.91465 0.91290 0.91991 0.92004 0.92983 0.93257 0.91436 0.90904 0.88922 0.97086 0.96624 0.78129 0.93758 0.89290 0.88419 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.32 36.01 0.34 -0.53 16 2 C 0.13 1.37 7.02 -81.87 -0.57 0.79 16 3 C -0.10 -1.30 6.78 -83.55 -0.57 -1.87 16 4 C 0.60 9.13 7.53 -12.47 -0.09 9.04 16 5 O -0.51 -9.06 10.34 5.28 0.05 -9.01 16 6 N -0.59 -8.30 2.41 -166.44 -0.40 -8.70 16 7 C 0.07 0.79 6.33 -3.71 -0.02 0.77 16 8 C -0.13 -1.39 5.74 -26.61 -0.15 -1.54 16 9 C -0.12 -1.26 5.43 -26.69 -0.14 -1.41 16 10 C -0.10 -1.38 2.25 -90.50 -0.20 -1.58 16 11 H 0.09 1.22 6.86 -51.93 -0.36 0.86 16 12 C -0.15 -2.04 8.19 37.16 0.30 -1.73 16 13 C 0.16 2.36 2.74 -67.60 -0.19 2.18 16 14 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.12 -2.23 2.75 -26.73 -0.07 -2.30 16 16 C 0.15 3.23 5.69 -4.04 -0.02 3.21 16 17 N -0.73 -19.93 5.60 -59.91 -0.34 -20.27 16 18 C -0.23 -6.85 9.99 -15.06 -0.15 -7.00 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 21 N -0.93 -29.41 13.06 55.49 0.72 -28.68 16 22 Si 0.90 23.22 29.55 -169.99 -5.02 18.20 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 N -0.21 -2.66 8.63 32.84 0.28 -2.38 16 27 N -0.08 -0.90 13.78 60.35 0.83 -0.06 16 28 N -0.36 -3.36 4.03 -63.59 -0.26 -3.62 16 29 C 0.09 0.34 11.17 59.85 0.67 1.01 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.43 7.84 -51.93 -0.41 0.02 16 32 H 0.12 1.33 6.57 -51.93 -0.34 0.99 16 33 H 0.14 1.71 3.59 -132.09 -0.47 1.24 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.76 6.33 -51.93 -0.33 0.43 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.10 6.16 -51.93 -0.32 0.78 16 42 H 0.07 1.45 5.51 -51.93 -0.29 1.17 16 43 H 0.09 1.95 6.24 -51.93 -0.32 1.62 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.02 0.34 6.65 -51.93 -0.35 0.00 16 46 H 0.39 11.17 7.67 -40.82 -0.31 10.86 16 47 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 48 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.10 0.18 7.78 -51.93 -0.40 -0.22 16 50 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -35.36 379.90 -7.36 -42.72 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.98 Total: 7.70 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -0.98 Total: -1.62 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: 0.85 Total: -63.72 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.05 Total: -9.01 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.36 -7.36 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263953163.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.261 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds