Wall clock time and date at job start Tue Mar 31 2020 18:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36592 * 126.58224 * 2 1 4 4 C 1.47524 * 125.76904 * 0.03600 * 3 2 1 5 5 O 1.21596 * 120.00043 * 353.89823 * 4 3 2 6 6 N 1.34779 * 119.99940 * 173.89829 * 4 3 2 7 7 C 1.46925 * 120.63250 * 5.20101 * 6 4 3 8 8 C 1.53186 * 108.77524 * 233.62833 * 7 6 4 9 9 C 1.53039 * 109.31147 * 305.36354 * 8 7 6 10 10 C 1.53038 * 109.54077 * 61.36416 * 9 8 7 11 11 H 1.08998 * 109.49813 * 178.67968 * 10 9 8 12 12 C 1.53007 * 109.49675 * 58.58487 * 10 9 8 13 13 C 1.46927 * 120.62916 * 185.21592 * 6 4 3 14 14 H 1.09004 * 109.58829 * 246.30265 * 13 6 4 15 15 C 1.53001 * 109.58768 * 6.58667 * 13 6 4 16 16 C 1.52999 * 109.47186 * 178.17522 * 15 13 6 17 17 N 1.46496 * 109.47512 * 174.87781 * 16 15 13 18 18 C 1.36936 * 120.00270 * 180.27698 * 17 16 15 19 19 H 1.07994 * 119.99713 * 359.72831 * 18 17 16 20 20 C 1.38811 * 119.99655 * 179.72234 * 18 17 16 21 21 N 1.31616 * 120.00764 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99687 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47167 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47043 * 120.00283 * 22 20 18 25 25 H 1.48501 * 109.47057 * 240.00124 * 22 20 18 26 26 N 1.34395 * 108.46122 * 179.77168 * 3 2 1 27 27 N 1.28764 * 109.51850 * 0.22814 * 26 3 2 28 28 N 1.34817 * 126.57620 * 180.16423 * 2 1 3 29 29 C 1.46499 * 126.59610 * 359.97438 * 28 2 1 30 30 H 1.08999 * 109.46647 * 89.99900 * 1 2 3 31 31 H 1.08999 * 109.47441 * 210.00548 * 1 2 3 32 32 H 1.09002 * 109.46899 * 330.00370 * 1 2 3 33 33 H 1.09010 * 109.58082 * 353.41544 * 7 6 4 34 34 H 1.08997 * 109.58823 * 113.83630 * 7 6 4 35 35 H 1.09005 * 109.49999 * 65.31568 * 8 7 6 36 36 H 1.08993 * 109.50046 * 185.40841 * 8 7 6 37 37 H 1.09005 * 109.45954 * 181.38954 * 9 8 7 38 38 H 1.09001 * 109.45778 * 301.35366 * 9 8 7 39 39 H 1.08992 * 109.47032 * 300.16759 * 12 10 9 40 40 H 1.09000 * 109.46713 * 60.16463 * 12 10 9 41 41 H 1.08996 * 109.47130 * 180.16102 * 12 10 9 42 42 H 1.09002 * 109.47175 * 58.17900 * 15 13 6 43 43 H 1.08998 * 109.46845 * 298.17759 * 15 13 6 44 44 H 1.09006 * 109.47139 * 54.87474 * 16 15 13 45 45 H 1.08999 * 109.47254 * 294.88340 * 16 15 13 46 46 H 0.97002 * 119.99742 * 0.02562 * 17 16 15 47 47 H 0.96996 * 120.01079 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.46676 * 270.29352 * 29 28 2 49 49 H 1.08997 * 109.47029 * 30.29452 * 29 28 2 50 50 H 1.08997 * 109.46766 * 150.29744 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8739 2.5026 0.0008 5 8 0.6917 2.7646 -0.1105 6 7 2.7756 3.4966 0.1247 7 6 4.2151 3.2032 0.1458 8 6 4.8287 3.8343 1.3995 9 6 4.4909 5.3266 1.4320 10 6 2.9724 5.5065 1.4944 11 1 2.7335 6.5689 1.5412 12 6 2.4257 4.8042 2.7390 13 6 2.3378 4.8943 0.2418 14 1 2.6540 5.4514 -0.6402 15 6 0.8133 4.9459 0.3616 16 6 0.3638 6.3987 0.5289 17 7 -1.0998 6.4611 0.5210 18 6 -1.7345 7.6675 0.6514 19 1 -1.1560 8.5724 0.7646 20 6 -3.1212 7.7272 0.6381 21 7 -3.8262 6.6243 0.5006 22 14 -3.9870 9.3728 0.8168 23 1 -2.9760 10.4514 0.9564 24 1 -4.8191 9.6276 -0.3866 25 1 -4.8542 9.3475 2.0220 26 7 3.5984 0.6788 0.0051 27 7 3.6298 -0.6084 0.0034 28 7 2.3104 -1.0827 -0.0031 29 6 1.8863 -2.4849 -0.0066 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 4.3677 2.1241 0.1678 34 1 4.6866 3.6229 -0.7428 35 1 4.4218 3.3498 2.2871 36 1 5.9109 3.7066 1.3787 37 1 4.9471 5.7832 2.3104 38 1 4.8765 5.8059 0.5321 39 1 2.6664 3.7422 2.6922 40 1 2.8775 5.2402 3.6300 41 1 1.3439 4.9301 2.7816 42 1 0.4971 4.3656 1.2285 43 1 0.3638 4.5279 -0.5391 44 1 0.7575 6.9978 -0.2922 45 1 0.7390 6.7884 1.4752 46 1 -1.6194 5.6483 0.4196 47 1 -4.7952 6.6659 0.4916 48 1 1.7765 -2.8338 1.0202 49 1 0.9317 -2.5744 -0.5249 50 1 2.6354 -3.0897 -0.5176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263953163.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:08 Heat of formation + Delta-G solvation = 72.773170 kcal Electronic energy + Delta-G solvation = -30614.476910 eV Core-core repulsion = 26679.304704 eV Total energy + Delta-G solvation = -3935.172207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.40455 -41.55961 -38.77940 -36.99214 -36.05810 -34.76186 -34.11283 -33.26719 -32.47417 -30.02727 -29.17571 -28.39127 -27.64942 -26.53413 -25.27785 -24.30002 -23.68115 -22.43473 -21.78967 -21.13419 -19.59206 -19.16898 -18.23768 -17.48980 -17.19957 -16.88113 -16.64936 -16.35785 -16.11882 -15.46504 -15.38559 -15.28758 -15.10614 -14.74642 -14.69644 -14.34633 -14.24338 -14.08136 -14.00816 -13.90850 -13.54168 -13.34501 -13.18899 -13.05854 -12.88363 -12.85172 -12.58028 -12.45579 -12.31278 -12.09201 -12.04310 -11.76663 -11.68145 -11.55798 -11.27634 -11.16077 -10.91985 -10.83589 -10.21870 -10.08137 -9.45554 -8.96494 -7.91691 -5.21303 0.09298 0.57540 1.10057 1.46878 1.49104 1.59239 1.95409 2.24156 2.57773 3.09797 3.34864 3.40677 3.60322 3.63286 3.78048 3.83041 3.97074 4.10013 4.16212 4.26479 4.30188 4.33735 4.48504 4.53602 4.55351 4.59833 4.62483 4.64838 4.68956 4.74223 4.77279 4.82851 4.85624 4.90302 5.01465 5.03179 5.11431 5.20783 5.26740 5.29169 5.41015 5.46426 5.47050 5.49836 5.55411 5.62195 5.85115 6.29904 6.43063 6.85035 7.21075 7.34966 8.12614 8.37026 9.32549 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.003270 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.842903 B = 8560.660793 C =10358.690579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.129 3.871 3 C -0.124 4.124 4 C 0.590 3.410 5 O -0.549 6.549 6 N -0.588 5.588 7 C 0.064 3.936 8 C -0.127 4.127 9 C -0.109 4.109 10 C -0.101 4.101 11 H 0.082 0.918 12 C -0.139 4.139 13 C 0.160 3.840 14 H 0.076 0.924 15 C -0.095 4.095 16 C 0.151 3.849 17 N -0.746 5.746 18 C -0.244 4.244 19 H 0.076 0.924 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.977 3.023 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.292 1.292 26 N -0.215 5.215 27 N -0.089 5.089 28 N -0.350 5.350 29 C 0.072 3.928 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.015 0.985 45 H 0.024 0.976 46 H 0.371 0.629 47 H 0.251 0.749 48 H 0.108 0.892 49 H 0.123 0.877 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.286 -19.575 0.482 27.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.010 4.010 3 C -0.264 4.264 4 C 0.377 3.623 5 O -0.427 6.427 6 N -0.319 5.319 7 C -0.059 4.059 8 C -0.165 4.165 9 C -0.147 4.147 10 C -0.120 4.120 11 H 0.100 0.900 12 C -0.196 4.196 13 C 0.057 3.943 14 H 0.094 0.906 15 C -0.133 4.133 16 C 0.024 3.976 17 N -0.388 5.388 18 C -0.376 4.376 19 H 0.094 0.906 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.219 1.219 26 N -0.086 5.086 27 N -0.067 5.067 28 N -0.136 5.136 29 C -0.067 4.067 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.158 0.842 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.032 0.968 45 H 0.042 0.958 46 H 0.203 0.797 47 H 0.060 0.940 48 H 0.127 0.873 49 H 0.141 0.859 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 20.188 -19.735 0.447 28.236 hybrid contribution -1.950 0.775 -0.024 2.099 sum 18.238 -18.961 0.423 26.312 Atomic orbital electron populations 1.20755 0.83030 1.05901 1.05458 1.22189 0.97111 0.86037 0.95639 1.21317 0.89582 0.95474 1.20028 1.17196 0.85241 0.83222 0.76652 1.90910 1.17571 1.82627 1.51585 1.47930 1.07635 1.05562 1.70788 1.23000 0.77701 1.06504 0.98681 1.21882 1.01584 0.95567 0.97422 1.21561 0.93374 0.96649 1.03112 1.21529 0.96613 1.00097 0.93751 0.89969 1.21796 1.00072 1.00216 0.97542 1.21225 0.93663 0.80967 0.98434 0.90565 1.21979 0.94036 0.94461 1.02830 1.20934 0.83662 0.95769 0.97262 1.42610 1.01839 1.06240 1.88132 1.19711 0.90099 0.87476 1.40308 0.90594 1.25640 0.97085 1.00695 1.03741 1.69860 1.05205 1.27948 1.59168 0.85017 0.78339 0.79313 0.76752 1.18912 1.21924 1.21862 1.73946 1.18702 1.04084 1.11912 1.81861 0.97850 1.03575 1.23437 1.50526 1.05135 1.09184 1.48758 1.22721 1.04155 0.73180 1.06625 0.88031 0.87026 0.89645 0.84238 0.91075 0.92362 0.88741 0.90355 0.90886 0.93180 0.91564 0.94571 0.92605 0.91508 0.96757 0.95831 0.79745 0.94039 0.87327 0.85891 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 9.32 71.24 0.66 -0.95 16 2 C 0.13 2.75 7.02 41.72 0.29 3.04 16 3 C -0.12 -3.37 6.78 40.82 0.28 -3.10 16 4 C 0.59 18.84 7.53 86.69 0.65 19.50 16 5 O -0.55 -20.81 10.34 -4.02 -0.04 -20.85 16 6 N -0.59 -16.80 2.41 -798.76 -1.93 -18.73 16 7 C 0.06 1.44 6.33 86.36 0.55 1.98 16 8 C -0.13 -2.39 5.74 30.67 0.18 -2.21 16 9 C -0.11 -2.12 5.43 30.62 0.17 -1.95 16 10 C -0.10 -2.62 2.25 -10.72 -0.02 -2.65 16 11 H 0.08 2.23 6.86 -2.39 -0.02 2.21 16 12 C -0.14 -3.88 8.19 71.98 0.59 -3.29 16 13 C 0.16 4.90 2.74 44.97 0.12 5.02 16 14 H 0.08 2.25 8.14 -2.38 -0.02 2.24 16 15 C -0.10 -3.76 2.75 30.59 0.08 -3.68 16 16 C 0.15 6.75 5.69 86.38 0.49 7.25 16 17 N -0.75 -42.14 5.60 -343.46 -1.92 -44.06 16 18 C -0.24 -14.60 9.99 84.03 0.84 -13.76 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 20 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 21 N -0.97 -62.72 13.06 21.65 0.28 -62.44 16 22 Si 0.98 48.13 29.55 68.60 2.03 50.16 16 23 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 N -0.21 -5.48 8.63 -50.00 -0.43 -5.91 16 27 N -0.09 -2.01 13.78 37.02 0.51 -1.50 16 28 N -0.35 -5.88 4.03 -355.10 -1.43 -7.32 16 29 C 0.07 0.35 11.17 127.77 1.43 1.78 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.11 1.04 7.84 -2.39 -0.02 1.02 16 32 H 0.08 2.10 6.57 -2.39 -0.02 2.08 16 33 H 0.14 3.31 3.59 -106.11 -0.38 2.93 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.23 6.33 -2.38 -0.02 1.21 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.40 5.97 -2.39 -0.01 1.39 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.04 1.22 6.16 -2.39 -0.01 1.20 16 42 H 0.06 2.39 5.51 -2.39 -0.01 2.37 16 43 H 0.07 3.00 6.24 -2.39 -0.01 2.99 16 44 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.02 1.04 6.65 -2.39 -0.02 1.02 16 46 H 0.37 22.66 7.67 -92.71 -0.71 21.94 16 47 H 0.25 15.53 8.31 -92.71 -0.77 14.75 16 48 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 49 H 0.12 0.03 7.78 -2.39 -0.02 0.01 16 50 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -79.08 379.90 3.72 -75.36 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.12 Total: 32.68 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 6.77 Total: 2.60 kcal Atomic # 7 Polarization: -135.03 SS G_CDS: -4.92 Total: -139.95 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.04 Total: -20.85 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -79.08 3.72 -75.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263953163.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.132 kcal (2) G-P(sol) polarization free energy of solvation -79.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds