Wall clock time and date at job start Tue Mar 31 2020 18:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36599 * 126.58008 * 2 1 4 4 C 1.47524 * 125.76994 * 0.02562 * 3 2 1 5 5 O 1.21602 * 119.99958 * 6.46442 * 4 3 2 6 6 N 1.34776 * 120.00158 * 186.46101 * 4 3 2 7 7 C 1.46928 * 120.62670 * 7.58836 * 6 4 3 8 8 C 1.53195 * 108.77042 * 126.37113 * 7 6 4 9 9 C 1.53030 * 109.31507 * 54.63347 * 8 7 6 10 10 C 1.53042 * 109.53846 * 298.63478 * 9 8 7 11 11 H 1.09003 * 109.49523 * 181.35216 * 10 9 8 12 12 C 1.53007 * 109.49619 * 301.41010 * 10 9 8 13 13 C 1.46919 * 120.62878 * 187.30730 * 6 4 3 14 14 H 1.09010 * 109.58420 * 113.84893 * 13 6 4 15 15 C 1.52999 * 109.59185 * 353.42104 * 13 6 4 16 16 C 1.52992 * 109.47306 * 178.92112 * 15 13 6 17 17 N 1.46506 * 109.47370 * 176.61081 * 16 15 13 18 18 C 1.36932 * 120.00096 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99824 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00180 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00220 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46639 * 60.00342 * 22 20 18 24 24 H 1.48499 * 109.47410 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47105 * 300.00660 * 22 20 18 26 26 N 1.34403 * 108.45921 * 179.86614 * 3 2 1 27 27 N 1.28764 * 109.51827 * 0.40212 * 26 3 2 28 28 N 1.34814 * 126.58127 * 180.30520 * 2 1 3 29 29 C 1.46500 * 126.59683 * 0.02562 * 28 2 1 30 30 H 1.08997 * 109.47138 * 269.70816 * 1 2 3 31 31 H 1.09007 * 109.46677 * 149.71572 * 1 2 3 32 32 H 1.08997 * 109.46969 * 29.71302 * 1 2 3 33 33 H 1.08997 * 109.58413 * 246.15190 * 7 6 4 34 34 H 1.08993 * 109.58987 * 6.44164 * 7 6 4 35 35 H 1.09002 * 109.49271 * 174.58671 * 8 7 6 36 36 H 1.09004 * 109.49619 * 294.67562 * 8 7 6 37 37 H 1.09002 * 109.46470 * 58.65590 * 9 8 7 38 38 H 1.08999 * 109.46229 * 178.61287 * 9 8 7 39 39 H 1.08996 * 109.46653 * 60.00191 * 12 10 9 40 40 H 1.08994 * 109.47103 * 179.97438 * 12 10 9 41 41 H 1.08999 * 109.47487 * 300.00100 * 12 10 9 42 42 H 1.09000 * 109.47289 * 298.92629 * 15 13 6 43 43 H 1.09001 * 109.46844 * 58.92001 * 15 13 6 44 44 H 1.09002 * 109.47669 * 296.61028 * 16 15 13 45 45 H 1.09002 * 109.47335 * 56.61112 * 16 15 13 46 46 H 0.97004 * 119.99351 * 359.97438 * 17 16 15 47 47 H 0.96989 * 120.00303 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.47199 * 89.99144 * 29 28 2 49 49 H 1.08996 * 109.47191 * 209.99579 * 29 28 2 50 50 H 1.09004 * 109.46626 * 329.99489 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6923 2.7648 0.1196 6 7 2.7746 3.4966 -0.1309 7 6 4.1793 3.1975 -0.4408 8 6 4.5937 4.0028 -1.6764 9 6 4.3056 5.4860 -1.4339 10 6 2.8052 5.6857 -1.2082 11 1 2.5975 6.7454 -1.0594 12 6 2.0334 5.1807 -2.4291 13 6 2.3692 4.8999 0.0270 14 1 2.8470 5.3209 0.9118 15 6 0.8485 4.9812 0.1740 16 6 0.4319 6.4408 0.3651 17 7 -1.0294 6.5279 0.4248 18 6 -1.6366 7.7438 0.5923 19 1 -1.0384 8.6387 0.6799 20 6 -3.0211 7.8262 0.6483 21 7 -3.7503 6.7357 0.5409 22 14 -3.8496 9.4848 0.8774 23 1 -3.4820 10.3812 -0.2480 24 1 -5.3231 9.3026 0.9048 25 1 -3.4020 10.0889 2.1580 26 7 3.5984 0.6789 0.0030 27 7 3.6299 -0.6083 -0.0037 28 7 2.3105 -1.0826 -0.0058 29 6 1.8865 -2.4848 -0.0138 30 1 -0.3633 -0.0052 1.0276 31 1 -0.3633 -0.8875 -0.5183 32 1 -0.3633 0.8925 -0.5094 33 1 4.8075 3.4768 0.4050 34 1 4.2902 2.1321 -0.6423 35 1 5.6592 3.8644 -1.8602 36 1 4.0272 3.6587 -2.5417 37 1 4.8532 5.8232 -0.5538 38 1 4.6224 6.0641 -2.3019 39 1 2.2405 4.1208 -2.5768 40 1 0.9649 5.3227 -2.2677 41 1 2.3452 5.7384 -3.3122 42 1 0.3749 4.5827 -0.7232 43 1 0.5354 4.3976 1.0397 44 1 0.8567 6.8214 1.2940 45 1 0.7973 7.0357 -0.4720 46 1 -1.5667 5.7242 0.3450 47 1 -4.7177 6.7933 0.5797 48 1 1.7816 -2.8269 -1.0434 49 1 2.6331 -3.0931 0.4969 50 1 0.9293 -2.5779 0.4993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263953164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:14 Heat of formation + Delta-G solvation = 95.166157 kcal Electronic energy + Delta-G solvation = -30584.828921 eV Core-core repulsion = 26650.627747 eV Total energy + Delta-G solvation = -3934.201174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.50563 -40.44342 -37.62900 -35.47806 -34.94014 -33.41900 -32.82420 -32.29542 -30.70325 -28.84583 -27.99658 -27.68706 -26.51304 -25.15083 -23.67210 -23.18877 -22.35035 -21.28798 -20.56808 -20.07221 -18.57373 -17.40309 -16.80717 -16.65838 -15.98624 -15.95555 -15.32117 -15.08105 -14.66409 -14.31995 -14.24509 -14.06637 -13.80143 -13.60409 -13.42620 -13.26694 -13.18216 -13.06676 -12.88722 -12.72312 -12.69548 -12.25953 -12.18378 -11.72061 -11.68331 -11.20226 -11.10174 -11.00375 -10.75802 -10.73462 -10.66491 -10.48272 -10.29328 -10.16485 -9.96213 -9.85870 -9.53953 -9.25446 -8.81436 -8.70507 -8.29693 -6.73898 -5.61838 -2.89064 0.93036 1.59316 1.78353 3.03859 3.32920 3.52266 3.55843 3.57377 4.00271 4.05095 4.36792 4.51599 4.56499 4.70862 4.80833 4.84124 4.93944 4.95022 5.03975 5.13595 5.27893 5.31319 5.34419 5.46607 5.54894 5.61227 5.68573 5.75082 5.77314 5.83474 5.86992 5.94625 5.99269 6.10558 6.19315 6.24206 6.27700 6.29023 6.37611 6.43313 6.52495 6.62669 6.70038 6.83866 7.18383 7.30939 7.54137 7.76888 7.81870 8.33890 8.57663 9.68085 10.30902 10.66010 11.61176 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.003255 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.936450 B = 8598.800857 C =10387.744191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.125 3.875 3 C -0.100 4.100 4 C 0.597 3.403 5 O -0.512 6.512 6 N -0.590 5.590 7 C 0.086 3.914 8 C -0.135 4.135 9 C -0.115 4.115 10 C -0.104 4.104 11 H 0.088 0.912 12 C -0.146 4.146 13 C 0.157 3.843 14 H 0.071 0.929 15 C -0.116 4.116 16 C 0.146 3.854 17 N -0.730 5.730 18 C -0.234 4.234 19 H 0.068 0.932 20 C -0.017 4.017 21 N -0.934 5.934 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 N -0.205 5.205 27 N -0.077 5.077 28 N -0.365 5.365 29 C 0.087 3.913 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.011 0.989 45 H 0.017 0.983 46 H 0.385 0.615 47 H 0.254 0.746 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.986 -18.981 -4.050 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.012 4.012 3 C -0.240 4.240 4 C 0.382 3.618 5 O -0.387 6.387 6 N -0.322 5.322 7 C -0.038 4.038 8 C -0.174 4.174 9 C -0.153 4.153 10 C -0.123 4.123 11 H 0.106 0.894 12 C -0.203 4.203 13 C 0.054 3.946 14 H 0.089 0.911 15 C -0.153 4.153 16 C 0.018 3.982 17 N -0.374 5.374 18 C -0.366 4.366 19 H 0.086 0.914 20 C -0.213 4.213 21 N -0.583 5.583 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 N -0.077 5.077 27 N -0.056 5.056 28 N -0.152 5.152 29 C -0.054 4.054 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.028 0.972 45 H 0.035 0.965 46 H 0.219 0.781 47 H 0.063 0.937 48 H 0.107 0.893 49 H 0.119 0.881 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.797 -19.127 -3.949 26.423 hybrid contribution -1.421 0.727 0.130 1.601 sum 16.376 -18.401 -3.819 24.927 Atomic orbital electron populations 1.20746 0.84325 1.05523 1.04954 1.21985 0.96378 0.86163 0.96692 1.21463 0.88691 0.95918 1.17878 1.16851 0.85481 0.82129 0.77305 1.90948 1.16006 1.81912 1.49803 1.47827 1.09183 1.05931 1.69283 1.22453 0.80860 1.03507 0.96969 1.21957 1.01045 0.95833 0.98517 1.21581 0.96115 0.96032 1.01587 1.21493 0.94600 1.00663 0.95583 0.89389 1.21882 1.01388 1.00493 0.96534 1.21259 0.97300 0.79022 0.96987 0.91120 1.22303 0.91229 0.97025 1.04772 1.20828 0.86611 0.93712 0.97027 1.42332 0.99869 1.07296 1.87885 1.19206 0.89704 0.86470 1.41173 0.91437 1.24722 0.96232 0.96869 1.03427 1.69666 1.04645 1.26207 1.57748 0.86294 0.78461 0.83732 0.77875 1.21408 1.21783 1.21416 1.74338 1.19009 1.03613 1.10782 1.81963 0.96244 1.03918 1.23428 1.50226 1.06415 1.07753 1.50773 1.22159 1.02490 0.76090 1.04647 0.88721 0.90784 0.86674 0.91828 0.85823 0.91201 0.91424 0.91972 0.91940 0.93026 0.91257 0.93329 0.89948 0.89958 0.97159 0.96533 0.78122 0.93658 0.89322 0.88123 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.32 36.01 0.34 -0.52 16 2 C 0.13 1.37 7.02 -81.87 -0.57 0.79 16 3 C -0.10 -1.35 6.70 -83.55 -0.56 -1.90 16 4 C 0.60 9.10 7.59 -12.48 -0.09 9.01 16 5 O -0.51 -9.00 10.21 5.28 0.05 -8.95 16 6 N -0.59 -8.27 2.42 -166.70 -0.40 -8.67 16 7 C 0.09 1.00 6.08 -3.71 -0.02 0.98 16 8 C -0.14 -1.40 5.74 -26.61 -0.15 -1.55 16 9 C -0.12 -1.24 5.43 -26.69 -0.14 -1.39 16 10 C -0.10 -1.40 2.32 -90.72 -0.21 -1.61 16 11 H 0.09 1.24 6.70 -51.93 -0.35 0.89 16 12 C -0.15 -2.06 8.18 37.16 0.30 -1.75 16 13 C 0.16 2.35 2.69 -67.83 -0.18 2.17 16 14 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 15 C -0.12 -2.16 2.78 -26.74 -0.07 -2.24 16 16 C 0.15 3.19 6.03 -4.04 -0.02 3.16 16 17 N -0.73 -19.91 5.60 -59.91 -0.34 -20.24 16 18 C -0.23 -6.90 9.99 -15.06 -0.15 -7.05 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 21 N -0.93 -29.42 13.06 55.49 0.72 -28.69 16 22 Si 0.90 23.22 29.55 -169.99 -5.02 18.20 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 N -0.20 -2.68 8.79 32.85 0.29 -2.39 16 27 N -0.08 -0.92 13.78 60.35 0.83 -0.09 16 28 N -0.37 -3.42 4.03 -63.59 -0.26 -3.67 16 29 C 0.09 0.35 11.18 59.85 0.67 1.02 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.42 7.82 -51.93 -0.41 0.01 16 32 H 0.11 1.30 6.57 -51.93 -0.34 0.96 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.12 1.50 4.12 -78.07 -0.32 1.18 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.75 6.34 -51.93 -0.33 0.42 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 40 H 0.07 1.16 6.30 -51.93 -0.33 0.83 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.66 5.15 -51.93 -0.27 1.39 16 43 H 0.08 1.71 6.42 -51.93 -0.33 1.37 16 44 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.02 0.36 6.43 -51.93 -0.33 0.03 16 46 H 0.39 11.17 7.67 -40.82 -0.31 10.85 16 47 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 48 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.10 0.20 7.76 -51.93 -0.40 -0.21 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -35.32 380.14 -7.18 -42.50 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.81 Total: 7.78 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -0.98 Total: -1.50 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: 0.85 Total: -63.76 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.05 Total: -8.95 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.32 -7.18 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263953164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.668 kcal (2) G-P(sol) polarization free energy of solvation -35.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds