Wall clock time and date at job start Tue Mar 31 2020 18:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36599 * 126.58008 * 2 1 4 4 C 1.47524 * 125.76994 * 0.02562 * 3 2 1 5 5 O 1.21602 * 119.99958 * 6.46442 * 4 3 2 6 6 N 1.34776 * 120.00158 * 186.46101 * 4 3 2 7 7 C 1.46928 * 120.62670 * 7.58836 * 6 4 3 8 8 C 1.53195 * 108.77042 * 126.37113 * 7 6 4 9 9 C 1.53030 * 109.31507 * 54.63347 * 8 7 6 10 10 C 1.53042 * 109.53846 * 298.63478 * 9 8 7 11 11 H 1.09003 * 109.49523 * 181.35216 * 10 9 8 12 12 C 1.53007 * 109.49619 * 301.41010 * 10 9 8 13 13 C 1.46919 * 120.62878 * 187.30730 * 6 4 3 14 14 H 1.09010 * 109.58420 * 113.84893 * 13 6 4 15 15 C 1.52999 * 109.59185 * 353.42104 * 13 6 4 16 16 C 1.52992 * 109.47306 * 178.92112 * 15 13 6 17 17 N 1.46506 * 109.47370 * 176.61081 * 16 15 13 18 18 C 1.36932 * 120.00096 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99824 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00180 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00220 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46639 * 60.00342 * 22 20 18 24 24 H 1.48499 * 109.47410 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47105 * 300.00660 * 22 20 18 26 26 N 1.34403 * 108.45921 * 179.86614 * 3 2 1 27 27 N 1.28764 * 109.51827 * 0.40212 * 26 3 2 28 28 N 1.34814 * 126.58127 * 180.30520 * 2 1 3 29 29 C 1.46500 * 126.59683 * 0.02562 * 28 2 1 30 30 H 1.08997 * 109.47138 * 269.70816 * 1 2 3 31 31 H 1.09007 * 109.46677 * 149.71572 * 1 2 3 32 32 H 1.08997 * 109.46969 * 29.71302 * 1 2 3 33 33 H 1.08997 * 109.58413 * 246.15190 * 7 6 4 34 34 H 1.08993 * 109.58987 * 6.44164 * 7 6 4 35 35 H 1.09002 * 109.49271 * 174.58671 * 8 7 6 36 36 H 1.09004 * 109.49619 * 294.67562 * 8 7 6 37 37 H 1.09002 * 109.46470 * 58.65590 * 9 8 7 38 38 H 1.08999 * 109.46229 * 178.61287 * 9 8 7 39 39 H 1.08996 * 109.46653 * 60.00191 * 12 10 9 40 40 H 1.08994 * 109.47103 * 179.97438 * 12 10 9 41 41 H 1.08999 * 109.47487 * 300.00100 * 12 10 9 42 42 H 1.09000 * 109.47289 * 298.92629 * 15 13 6 43 43 H 1.09001 * 109.46844 * 58.92001 * 15 13 6 44 44 H 1.09002 * 109.47669 * 296.61028 * 16 15 13 45 45 H 1.09002 * 109.47335 * 56.61112 * 16 15 13 46 46 H 0.97004 * 119.99351 * 359.97438 * 17 16 15 47 47 H 0.96989 * 120.00303 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.47199 * 89.99144 * 29 28 2 49 49 H 1.08996 * 109.47191 * 209.99579 * 29 28 2 50 50 H 1.09004 * 109.46626 * 329.99489 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6923 2.7648 0.1196 6 7 2.7746 3.4966 -0.1309 7 6 4.1793 3.1975 -0.4408 8 6 4.5937 4.0028 -1.6764 9 6 4.3056 5.4860 -1.4339 10 6 2.8052 5.6857 -1.2082 11 1 2.5975 6.7454 -1.0594 12 6 2.0334 5.1807 -2.4291 13 6 2.3692 4.8999 0.0270 14 1 2.8470 5.3209 0.9118 15 6 0.8485 4.9812 0.1740 16 6 0.4319 6.4408 0.3651 17 7 -1.0294 6.5279 0.4248 18 6 -1.6366 7.7438 0.5923 19 1 -1.0384 8.6387 0.6799 20 6 -3.0211 7.8262 0.6483 21 7 -3.7503 6.7357 0.5409 22 14 -3.8496 9.4848 0.8774 23 1 -3.4820 10.3812 -0.2480 24 1 -5.3231 9.3026 0.9048 25 1 -3.4020 10.0889 2.1580 26 7 3.5984 0.6789 0.0030 27 7 3.6299 -0.6083 -0.0037 28 7 2.3105 -1.0826 -0.0058 29 6 1.8865 -2.4848 -0.0138 30 1 -0.3633 -0.0052 1.0276 31 1 -0.3633 -0.8875 -0.5183 32 1 -0.3633 0.8925 -0.5094 33 1 4.8075 3.4768 0.4050 34 1 4.2902 2.1321 -0.6423 35 1 5.6592 3.8644 -1.8602 36 1 4.0272 3.6587 -2.5417 37 1 4.8532 5.8232 -0.5538 38 1 4.6224 6.0641 -2.3019 39 1 2.2405 4.1208 -2.5768 40 1 0.9649 5.3227 -2.2677 41 1 2.3452 5.7384 -3.3122 42 1 0.3749 4.5827 -0.7232 43 1 0.5354 4.3976 1.0397 44 1 0.8567 6.8214 1.2940 45 1 0.7973 7.0357 -0.4720 46 1 -1.5667 5.7242 0.3450 47 1 -4.7177 6.7933 0.5797 48 1 1.7816 -2.8269 -1.0434 49 1 2.6331 -3.0931 0.4969 50 1 0.9293 -2.5779 0.4993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263953164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:13 Heat of formation + Delta-G solvation = 71.444931 kcal Electronic energy + Delta-G solvation = -30585.857551 eV Core-core repulsion = 26650.627747 eV Total energy + Delta-G solvation = -3935.229804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.38541 -41.58444 -38.77494 -36.98214 -36.03853 -34.77776 -34.11834 -33.25853 -32.47994 -30.02669 -29.14981 -28.37509 -27.65696 -26.52883 -25.26816 -24.32068 -23.66471 -22.40326 -21.78299 -21.13873 -19.61567 -19.16742 -18.16931 -17.50321 -17.17115 -16.86628 -16.63581 -16.44527 -16.06923 -15.54932 -15.35207 -15.26701 -15.02906 -14.73609 -14.67001 -14.35262 -14.19738 -14.09441 -14.04379 -13.90796 -13.54304 -13.34358 -13.13019 -13.03272 -12.89558 -12.79167 -12.54250 -12.48046 -12.30669 -12.13718 -12.09766 -11.75711 -11.67005 -11.58978 -11.29183 -11.20065 -10.92733 -10.83251 -10.19840 -10.12937 -9.43589 -8.95810 -7.91062 -5.20674 0.09758 0.58579 1.11213 1.46735 1.51477 1.57431 1.95877 2.22748 2.58283 3.12649 3.35186 3.40919 3.61378 3.63580 3.78614 3.83535 3.96274 4.11068 4.14910 4.27736 4.31689 4.34051 4.48154 4.53658 4.56073 4.59988 4.64093 4.64935 4.68551 4.73979 4.78452 4.83095 4.85114 4.90359 5.01768 5.02820 5.11148 5.19701 5.27248 5.28277 5.36337 5.46297 5.47823 5.50027 5.54409 5.61602 5.82846 6.30180 6.42421 6.84582 7.20334 7.35305 8.13170 8.37697 9.32775 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.003255 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.936450 B = 8598.800857 C =10387.744191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.129 3.871 3 C -0.127 4.127 4 C 0.590 3.410 5 O -0.547 6.547 6 N -0.589 5.589 7 C 0.084 3.916 8 C -0.130 4.130 9 C -0.109 4.109 10 C -0.102 4.102 11 H 0.082 0.918 12 C -0.139 4.139 13 C 0.161 3.839 14 H 0.078 0.922 15 C -0.092 4.092 16 C 0.148 3.852 17 N -0.745 5.745 18 C -0.247 4.247 19 H 0.076 0.924 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.277 1.277 26 N -0.214 5.214 27 N -0.091 5.091 28 N -0.351 5.351 29 C 0.072 3.928 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.012 0.988 45 H 0.026 0.974 46 H 0.371 0.629 47 H 0.251 0.749 48 H 0.109 0.891 49 H 0.114 0.886 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.686 -19.469 -4.418 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.010 4.010 3 C -0.266 4.266 4 C 0.377 3.623 5 O -0.425 6.425 6 N -0.321 5.321 7 C -0.039 4.039 8 C -0.168 4.168 9 C -0.146 4.146 10 C -0.121 4.121 11 H 0.100 0.900 12 C -0.196 4.196 13 C 0.058 3.942 14 H 0.096 0.904 15 C -0.130 4.130 16 C 0.021 3.979 17 N -0.387 5.387 18 C -0.379 4.379 19 H 0.094 0.906 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.203 1.203 26 N -0.087 5.087 27 N -0.070 5.070 28 N -0.137 5.137 29 C -0.067 4.067 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.030 0.970 45 H 0.044 0.956 46 H 0.202 0.798 47 H 0.060 0.940 48 H 0.127 0.873 49 H 0.132 0.868 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 19.579 -19.632 -4.323 28.061 hybrid contribution -1.922 0.734 0.243 2.072 sum 17.656 -18.899 -4.080 26.183 Atomic orbital electron populations 1.20751 0.83033 1.05937 1.05381 1.22203 0.97111 0.86081 0.95624 1.21329 0.89619 0.95506 1.20187 1.17181 0.85204 0.83202 0.76743 1.90931 1.17380 1.82647 1.51532 1.47900 1.10168 1.05146 1.68846 1.22617 0.79323 1.03855 0.98077 1.21939 1.02484 0.95089 0.97251 1.21548 0.93582 0.96596 1.02879 1.21473 0.96780 0.99741 0.94118 0.89952 1.21794 0.99310 1.00772 0.97694 1.21125 0.94390 0.80326 0.98374 0.90373 1.21981 0.94129 0.94166 1.02722 1.20972 0.83828 0.95954 0.97127 1.42577 1.01950 1.06246 1.87965 1.19647 0.90348 0.87417 1.40465 0.90622 1.25644 0.96922 1.00825 1.03712 1.69851 1.04599 1.28596 1.59120 0.85152 0.76854 0.79117 0.78269 1.20207 1.21983 1.20329 1.74296 1.18908 1.04177 1.11300 1.81858 0.97798 1.03562 1.23766 1.50535 1.05187 1.09178 1.48839 1.22710 1.04095 0.73224 1.06626 0.88226 0.86984 0.89534 0.90836 0.85994 0.88557 0.92276 0.90745 0.90343 0.93150 0.94660 0.91709 0.91805 0.92415 0.96979 0.95575 0.79754 0.94032 0.87252 0.86756 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.32 71.24 0.66 -0.94 16 2 C 0.13 2.75 7.02 41.72 0.29 3.05 16 3 C -0.13 -3.46 6.70 40.82 0.27 -3.18 16 4 C 0.59 18.78 7.59 86.69 0.66 19.43 16 5 O -0.55 -20.67 10.21 -4.04 -0.04 -20.71 16 6 N -0.59 -16.70 2.42 -799.57 -1.93 -18.63 16 7 C 0.08 1.86 6.08 86.36 0.53 2.39 16 8 C -0.13 -2.39 5.74 30.67 0.18 -2.21 16 9 C -0.11 -2.07 5.43 30.62 0.17 -1.91 16 10 C -0.10 -2.66 2.32 -10.86 -0.03 -2.69 16 11 H 0.08 2.25 6.70 -2.39 -0.02 2.23 16 12 C -0.14 -3.94 8.18 71.98 0.59 -3.35 16 13 C 0.16 4.88 2.69 44.83 0.12 5.00 16 14 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 15 C -0.09 -3.63 2.78 30.59 0.09 -3.55 16 16 C 0.15 6.64 6.03 86.38 0.52 7.16 16 17 N -0.75 -42.11 5.60 -343.45 -1.92 -44.03 16 18 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 19 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 20 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 21 N -0.97 -62.74 13.06 21.65 0.28 -62.46 16 22 Si 0.98 48.11 29.55 68.60 2.03 50.13 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 N -0.21 -5.54 8.79 -49.99 -0.44 -5.98 16 27 N -0.09 -2.09 13.78 37.02 0.51 -1.58 16 28 N -0.35 -6.00 4.03 -355.09 -1.43 -7.43 16 29 C 0.07 0.37 11.18 127.77 1.43 1.80 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.11 1.02 7.82 -2.38 -0.02 1.00 16 32 H 0.09 2.08 6.57 -2.39 -0.02 2.07 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.12 2.87 4.12 -36.22 -0.15 2.72 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.21 6.34 -2.38 -0.02 1.20 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.42 5.97 -2.39 -0.01 1.41 16 40 H 0.03 1.23 6.30 -2.39 -0.02 1.21 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 2.76 5.15 -2.39 -0.01 2.75 16 43 H 0.06 2.56 6.42 -2.39 -0.02 2.54 16 44 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.03 1.14 6.43 -2.39 -0.02 1.12 16 46 H 0.37 22.67 7.67 -92.71 -0.71 21.96 16 47 H 0.25 15.61 8.31 -92.72 -0.77 14.84 16 48 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 49 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 50 H 0.12 0.06 7.76 -2.39 -0.02 0.04 16 Total: -1.00 -79.16 380.14 3.95 -75.21 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.12 Total: 32.77 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 6.78 Total: 2.72 kcal Atomic # 7 Polarization: -135.18 SS G_CDS: -4.94 Total: -140.12 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.04 Total: -20.71 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.13 kcal Total: -79.16 3.95 -75.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263953164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.654 kcal (2) G-P(sol) polarization free energy of solvation -79.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds