Wall clock time and date at job start Tue Mar 31 2020 18:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36597 * 126.58343 * 2 1 4 4 C 1.47518 * 125.76801 * 359.75943 * 3 2 1 5 5 O 1.21601 * 120.00236 * 5.99717 * 4 3 2 6 6 N 1.34777 * 120.00226 * 185.99585 * 4 3 2 7 7 C 1.46925 * 120.62644 * 7.29598 * 6 4 3 8 8 C 1.53630 * 108.54214 * 126.37191 * 7 6 4 9 9 C 1.53040 * 109.23948 * 54.85356 * 8 7 6 10 10 C 1.53040 * 109.54123 * 298.51089 * 9 8 7 11 11 H 1.08996 * 109.49499 * 301.41742 * 10 9 8 12 12 C 1.52999 * 109.49852 * 181.31888 * 10 9 8 13 13 C 1.46927 * 120.63546 * 187.58257 * 6 4 3 14 14 H 1.08996 * 109.58929 * 113.79195 * 13 6 4 15 15 C 1.52997 * 109.58317 * 353.50984 * 13 6 4 16 16 C 1.52999 * 109.47357 * 289.71170 * 15 13 6 17 17 N 1.46505 * 109.47009 * 174.31027 * 16 15 13 18 18 C 1.36941 * 119.99677 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00219 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99777 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99898 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47238 * 59.99938 * 22 20 18 24 24 H 1.48502 * 109.46835 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47354 * 299.99810 * 22 20 18 26 26 N 1.34397 * 108.46163 * 179.73650 * 3 2 1 27 27 N 1.28760 * 109.52301 * 0.02562 * 26 3 2 28 28 N 1.34822 * 126.57757 * 179.68799 * 2 1 3 29 29 C 1.46498 * 126.59321 * 0.28286 * 28 2 1 30 30 H 1.09002 * 109.47284 * 90.00120 * 1 2 3 31 31 H 1.09004 * 109.47468 * 210.00238 * 1 2 3 32 32 H 1.09000 * 109.46855 * 330.00062 * 1 2 3 33 33 H 1.08995 * 109.59078 * 246.20055 * 7 6 4 34 34 H 1.09000 * 109.59149 * 6.63290 * 7 6 4 35 35 H 1.08999 * 109.62976 * 294.86747 * 8 7 6 36 36 H 1.08994 * 109.43331 * 174.72533 * 8 7 6 37 37 H 1.09008 * 109.45747 * 178.49341 * 9 8 7 38 38 H 1.09001 * 109.44850 * 58.53544 * 9 8 7 39 39 H 1.09006 * 109.46868 * 300.16238 * 12 10 9 40 40 H 1.08997 * 109.46858 * 60.15967 * 12 10 9 41 41 H 1.08993 * 109.47327 * 180.16675 * 12 10 9 42 42 H 1.09001 * 109.47391 * 49.71434 * 15 13 6 43 43 H 1.09003 * 109.47421 * 169.70904 * 15 13 6 44 44 H 1.08997 * 109.47220 * 294.30736 * 16 15 13 45 45 H 1.08999 * 109.47346 * 54.31406 * 16 15 13 46 46 H 0.97001 * 120.00233 * 359.97438 * 17 16 15 47 47 H 0.96999 * 120.00188 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.46732 * 90.00172 * 29 28 2 49 49 H 1.09001 * 109.46746 * 209.99350 * 29 28 2 50 50 H 1.08990 * 109.47175 * 329.99683 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5026 -0.0050 5 8 0.6911 2.7648 0.1004 6 7 2.7761 3.4964 -0.1264 7 6 4.1854 3.1969 -0.4138 8 6 4.6139 4.0025 -1.6498 9 6 4.3230 5.4858 -1.4106 10 6 2.8200 5.6857 -1.2032 11 1 2.2808 5.3260 -2.0795 12 6 2.5263 7.1730 -0.9969 13 6 2.3702 4.8996 0.0324 14 1 2.8403 5.3175 0.9225 15 6 0.8486 4.9809 0.1697 16 6 0.1966 4.6432 -1.1726 17 7 -1.2582 4.5879 -1.0086 18 6 -2.0578 4.3008 -2.0826 19 1 -1.6160 4.1147 -3.0503 20 6 -3.4362 4.2479 -1.9271 21 7 -3.9746 4.4732 -0.7473 22 14 -4.5270 3.8555 -3.3919 23 1 -4.1745 2.5157 -3.9267 24 1 -5.9493 3.8591 -2.9650 25 1 -4.3242 4.8792 -4.4484 26 7 3.5984 0.6788 0.0059 27 7 3.6298 -0.6084 0.0090 28 7 2.3104 -1.0827 0.0059 29 6 1.8862 -2.4849 0.0077 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 4.8006 3.4788 0.4407 34 1 4.2994 2.1313 -0.6130 35 1 4.0577 3.6586 -2.5218 36 1 5.6814 3.8640 -1.8207 37 1 4.6503 6.0640 -2.2749 38 1 4.8601 5.8226 -0.5240 39 1 3.0671 7.5321 -0.1212 40 1 2.8466 7.7319 -1.8762 41 1 1.4561 7.3146 -0.8462 42 1 0.5134 4.2705 0.9254 43 1 0.5641 5.9899 0.4682 44 1 0.4509 5.4109 -1.9034 45 1 0.5600 3.6761 -1.5200 46 1 -1.6550 4.7547 -0.1393 47 1 -4.9378 4.4366 -0.6387 48 1 1.7852 -2.8352 -1.0195 49 1 2.6310 -3.0890 0.5259 50 1 0.9273 -2.5738 0.5180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263953165.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:19 Heat of formation + Delta-G solvation = 111.324387 kcal Electronic energy + Delta-G solvation = -31286.559221 eV Core-core repulsion = 27353.058721 eV Total energy + Delta-G solvation = -3933.500501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.31516 -40.37508 -37.39867 -35.36876 -34.71744 -33.44609 -32.68883 -32.08909 -30.69554 -28.88971 -27.81563 -27.46494 -26.20789 -25.07280 -23.48397 -22.73361 -22.02638 -21.34115 -20.89163 -19.91787 -18.75416 -17.22692 -16.69356 -16.50594 -16.04087 -15.57932 -15.17316 -14.81224 -14.62853 -14.45066 -14.08458 -14.04045 -13.58938 -13.42156 -13.37580 -13.11228 -12.92312 -12.89842 -12.72335 -12.47808 -12.46299 -12.26508 -11.99000 -11.70986 -11.57901 -11.22738 -11.10032 -10.92033 -10.81833 -10.59698 -10.46942 -10.35953 -10.15951 -10.07901 -9.91421 -9.75141 -9.47628 -9.06277 -8.66093 -8.56381 -8.09004 -6.56833 -5.55197 -2.78564 1.13409 1.79093 1.96767 3.18893 3.52926 3.55584 3.57220 3.58505 4.20450 4.23697 4.57177 4.70760 4.73502 4.77227 4.86947 4.94851 4.98999 5.05110 5.13991 5.21627 5.41270 5.44510 5.59351 5.60814 5.66334 5.75169 5.76131 5.76714 5.83304 5.83946 5.90516 6.03257 6.04703 6.13489 6.23269 6.27304 6.38166 6.42318 6.47081 6.48940 6.64138 6.69369 6.80156 6.90703 7.30844 7.42342 7.70345 7.86944 7.95405 8.58704 8.65335 9.75217 10.42910 10.77466 11.68545 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008425 B = 0.005082 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.700943 B = 5508.610255 C = 8149.988567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.129 3.871 3 C -0.098 4.098 4 C 0.581 3.419 5 O -0.474 6.474 6 N -0.596 5.596 7 C 0.087 3.913 8 C -0.134 4.134 9 C -0.114 4.114 10 C -0.108 4.108 11 H 0.085 0.915 12 C -0.144 4.144 13 C 0.162 3.838 14 H 0.066 0.934 15 C -0.132 4.132 16 C 0.174 3.826 17 N -0.723 5.723 18 C -0.219 4.219 19 H 0.063 0.937 20 C -0.020 4.020 21 N -0.937 5.937 22 Si 0.900 3.100 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.289 1.289 26 N -0.208 5.208 27 N -0.082 5.082 28 N -0.367 5.367 29 C 0.088 3.912 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.052 0.948 44 H -0.001 1.001 45 H 0.029 0.971 46 H 0.381 0.619 47 H 0.251 0.749 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.081 -8.855 3.191 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.008 4.008 3 C -0.238 4.238 4 C 0.366 3.634 5 O -0.347 6.347 6 N -0.329 5.329 7 C -0.037 4.037 8 C -0.172 4.172 9 C -0.152 4.152 10 C -0.127 4.127 11 H 0.103 0.897 12 C -0.202 4.202 13 C 0.059 3.941 14 H 0.084 0.916 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.365 5.365 18 C -0.351 4.351 19 H 0.081 0.919 20 C -0.215 4.215 21 N -0.587 5.587 22 Si 0.732 3.268 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.216 1.216 26 N -0.080 5.080 27 N -0.061 5.061 28 N -0.153 5.153 29 C -0.053 4.053 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.016 0.984 45 H 0.047 0.953 46 H 0.214 0.786 47 H 0.061 0.939 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 18.845 -9.222 3.102 21.209 hybrid contribution -1.565 -0.152 -0.673 1.710 sum 17.280 -9.374 2.430 19.809 Atomic orbital electron populations 1.20809 0.84022 1.05709 1.05244 1.22053 0.96468 0.86078 0.96231 1.21478 0.88519 0.96036 1.17739 1.16862 0.85647 0.82118 0.78737 1.91063 1.15451 1.81171 1.46970 1.47715 1.08758 1.05716 1.70747 1.22522 0.80812 1.03678 0.96687 1.21992 1.00950 0.95663 0.98603 1.21609 0.96131 0.96003 1.01428 1.21653 0.95682 0.95886 0.99514 0.89683 1.21785 1.02626 0.94682 1.01082 1.21307 0.96785 0.79409 0.96632 0.91585 1.22400 0.91099 1.01192 1.02227 1.20783 0.85431 0.96438 0.92633 1.42224 0.99798 1.84596 1.09883 1.19166 0.88241 1.37972 0.89690 0.91927 1.24634 0.96548 1.03953 0.96392 1.69656 1.10099 1.57594 1.21377 0.86366 0.80100 0.77995 0.82368 1.21716 1.21892 1.21621 1.74273 1.19140 1.03615 1.11007 1.81921 0.96335 1.03968 1.23858 1.50202 1.06418 1.07721 1.50966 1.22135 1.02364 0.76178 1.04632 0.88658 0.91047 0.86054 0.92122 0.85680 0.91733 0.91233 0.92089 0.92175 0.93074 0.92816 0.91488 0.88000 0.92974 0.98389 0.95347 0.78578 0.93892 0.89363 0.88316 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 9.64 36.00 0.35 -0.90 16 2 C 0.13 1.73 7.02 -81.87 -0.57 1.15 16 3 C -0.10 -1.51 6.71 -83.55 -0.56 -2.07 16 4 C 0.58 9.82 6.76 -12.48 -0.08 9.73 16 5 O -0.47 -9.31 8.03 5.28 0.04 -9.27 16 6 N -0.60 -8.91 2.93 -166.18 -0.49 -9.39 16 7 C 0.09 1.09 6.12 -3.48 -0.02 1.07 16 8 C -0.13 -1.50 6.10 -26.38 -0.16 -1.66 16 9 C -0.11 -1.27 5.16 -26.69 -0.14 -1.40 16 10 C -0.11 -1.46 1.87 -90.50 -0.17 -1.63 16 11 H 0.08 1.36 6.12 -51.93 -0.32 1.04 16 12 C -0.14 -1.81 8.95 37.16 0.33 -1.48 16 13 C 0.16 2.40 2.66 -67.60 -0.18 2.22 16 14 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.13 -2.42 4.12 -26.73 -0.11 -2.53 16 16 C 0.17 3.85 4.19 -4.04 -0.02 3.83 16 17 N -0.72 -19.51 5.55 -59.91 -0.33 -19.84 16 18 C -0.22 -6.42 9.99 -15.06 -0.15 -6.57 16 19 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 21 N -0.94 -29.32 13.06 55.49 0.72 -28.59 16 22 Si 0.90 23.17 29.55 -169.99 -5.02 18.14 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 26 N -0.21 -3.04 8.77 32.84 0.29 -2.75 16 27 N -0.08 -1.12 13.78 60.35 0.83 -0.29 16 28 N -0.37 -4.18 4.03 -63.59 -0.26 -4.44 16 29 C 0.09 0.53 11.33 59.85 0.68 1.21 16 30 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.64 7.18 -51.93 -0.37 0.27 16 32 H 0.12 1.89 6.33 -51.93 -0.33 1.57 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.13 1.68 4.09 -81.94 -0.34 1.35 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.97 6.86 -51.93 -0.36 0.61 16 42 H 0.10 2.06 5.67 -53.30 -0.30 1.76 16 43 H 0.05 0.94 7.17 -51.93 -0.37 0.57 16 44 H 0.00 -0.03 6.55 -51.93 -0.34 -0.37 16 45 H 0.03 0.67 5.50 -51.93 -0.29 0.39 16 46 H 0.38 10.93 7.67 -40.82 -0.31 10.62 16 47 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 48 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.10 0.41 7.15 -51.93 -0.37 0.03 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -34.74 379.16 -7.30 -42.03 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.89 Total: 8.41 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.90 Total: 0.27 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: 0.77 Total: -65.31 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.04 Total: -9.27 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.74 -7.30 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263953165.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.357 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds