Wall clock time and date at job start Tue Mar 31 2020 18:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36597 * 126.58343 * 2 1 4 4 C 1.47518 * 125.76801 * 359.75943 * 3 2 1 5 5 O 1.21601 * 120.00236 * 5.99717 * 4 3 2 6 6 N 1.34777 * 120.00226 * 185.99585 * 4 3 2 7 7 C 1.46925 * 120.62644 * 7.29598 * 6 4 3 8 8 C 1.53630 * 108.54214 * 126.37191 * 7 6 4 9 9 C 1.53040 * 109.23948 * 54.85356 * 8 7 6 10 10 C 1.53040 * 109.54123 * 298.51089 * 9 8 7 11 11 H 1.08996 * 109.49499 * 301.41742 * 10 9 8 12 12 C 1.52999 * 109.49852 * 181.31888 * 10 9 8 13 13 C 1.46927 * 120.63546 * 187.58257 * 6 4 3 14 14 H 1.08996 * 109.58929 * 113.79195 * 13 6 4 15 15 C 1.52997 * 109.58317 * 353.50984 * 13 6 4 16 16 C 1.52999 * 109.47357 * 289.71170 * 15 13 6 17 17 N 1.46505 * 109.47009 * 174.31027 * 16 15 13 18 18 C 1.36941 * 119.99677 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00219 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99777 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99898 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47238 * 59.99938 * 22 20 18 24 24 H 1.48502 * 109.46835 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47354 * 299.99810 * 22 20 18 26 26 N 1.34397 * 108.46163 * 179.73650 * 3 2 1 27 27 N 1.28760 * 109.52301 * 0.02562 * 26 3 2 28 28 N 1.34822 * 126.57757 * 179.68799 * 2 1 3 29 29 C 1.46498 * 126.59321 * 0.28286 * 28 2 1 30 30 H 1.09002 * 109.47284 * 90.00120 * 1 2 3 31 31 H 1.09004 * 109.47468 * 210.00238 * 1 2 3 32 32 H 1.09000 * 109.46855 * 330.00062 * 1 2 3 33 33 H 1.08995 * 109.59078 * 246.20055 * 7 6 4 34 34 H 1.09000 * 109.59149 * 6.63290 * 7 6 4 35 35 H 1.08999 * 109.62976 * 294.86747 * 8 7 6 36 36 H 1.08994 * 109.43331 * 174.72533 * 8 7 6 37 37 H 1.09008 * 109.45747 * 178.49341 * 9 8 7 38 38 H 1.09001 * 109.44850 * 58.53544 * 9 8 7 39 39 H 1.09006 * 109.46868 * 300.16238 * 12 10 9 40 40 H 1.08997 * 109.46858 * 60.15967 * 12 10 9 41 41 H 1.08993 * 109.47327 * 180.16675 * 12 10 9 42 42 H 1.09001 * 109.47391 * 49.71434 * 15 13 6 43 43 H 1.09003 * 109.47421 * 169.70904 * 15 13 6 44 44 H 1.08997 * 109.47220 * 294.30736 * 16 15 13 45 45 H 1.08999 * 109.47346 * 54.31406 * 16 15 13 46 46 H 0.97001 * 120.00233 * 359.97438 * 17 16 15 47 47 H 0.96999 * 120.00188 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.46732 * 90.00172 * 29 28 2 49 49 H 1.09001 * 109.46746 * 209.99350 * 29 28 2 50 50 H 1.08990 * 109.47175 * 329.99683 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5026 -0.0050 5 8 0.6911 2.7648 0.1004 6 7 2.7761 3.4964 -0.1264 7 6 4.1854 3.1969 -0.4138 8 6 4.6139 4.0025 -1.6498 9 6 4.3230 5.4858 -1.4106 10 6 2.8200 5.6857 -1.2032 11 1 2.2808 5.3260 -2.0795 12 6 2.5263 7.1730 -0.9969 13 6 2.3702 4.8996 0.0324 14 1 2.8403 5.3175 0.9225 15 6 0.8486 4.9809 0.1697 16 6 0.1966 4.6432 -1.1726 17 7 -1.2582 4.5879 -1.0086 18 6 -2.0578 4.3008 -2.0826 19 1 -1.6160 4.1147 -3.0503 20 6 -3.4362 4.2479 -1.9271 21 7 -3.9746 4.4732 -0.7473 22 14 -4.5270 3.8555 -3.3919 23 1 -4.1745 2.5157 -3.9267 24 1 -5.9493 3.8591 -2.9650 25 1 -4.3242 4.8792 -4.4484 26 7 3.5984 0.6788 0.0059 27 7 3.6298 -0.6084 0.0090 28 7 2.3104 -1.0827 0.0059 29 6 1.8862 -2.4849 0.0077 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 4.8006 3.4788 0.4407 34 1 4.2994 2.1313 -0.6130 35 1 4.0577 3.6586 -2.5218 36 1 5.6814 3.8640 -1.8207 37 1 4.6503 6.0640 -2.2749 38 1 4.8601 5.8226 -0.5240 39 1 3.0671 7.5321 -0.1212 40 1 2.8466 7.7319 -1.8762 41 1 1.4561 7.3146 -0.8462 42 1 0.5134 4.2705 0.9254 43 1 0.5641 5.9899 0.4682 44 1 0.4509 5.4109 -1.9034 45 1 0.5600 3.6761 -1.5200 46 1 -1.6550 4.7547 -0.1393 47 1 -4.9378 4.4366 -0.6387 48 1 1.7852 -2.8352 -1.0195 49 1 2.6310 -3.0890 0.5259 50 1 0.9273 -2.5738 0.5180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263953165.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:18 Heat of formation + Delta-G solvation = 87.660165 kcal Electronic energy + Delta-G solvation = -31287.585379 eV Core-core repulsion = 27353.058721 eV Total energy + Delta-G solvation = -3934.526658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.35985 -41.60723 -38.59013 -36.84286 -35.98897 -34.85984 -34.02052 -33.17320 -32.51784 -30.17392 -29.00433 -28.38053 -27.34178 -26.55413 -25.10111 -23.95991 -23.57447 -22.46713 -21.93775 -21.07677 -19.99912 -19.02060 -18.16405 -17.49947 -17.10706 -16.87360 -16.65563 -16.24863 -15.81439 -15.71360 -15.47309 -15.27265 -14.96878 -14.57346 -14.45971 -14.26794 -14.15125 -14.10745 -13.95592 -13.77148 -13.45773 -13.24190 -13.20693 -12.94440 -12.83127 -12.78067 -12.56609 -12.40184 -12.22324 -12.15752 -12.03065 -11.86483 -11.61469 -11.39188 -11.26335 -11.17153 -10.90684 -10.79455 -10.14897 -9.96476 -9.34022 -8.76210 -7.85000 -5.10000 0.11472 0.63953 1.12005 1.45847 1.49796 1.56126 2.03701 2.32359 2.61419 3.16496 3.39303 3.46622 3.63020 3.69468 3.82668 3.86196 3.97103 4.15108 4.19178 4.27179 4.31216 4.37391 4.46371 4.54038 4.60222 4.62986 4.63779 4.68539 4.73563 4.77741 4.82160 4.90940 4.93058 5.02067 5.04862 5.08572 5.14348 5.23233 5.29477 5.36220 5.40645 5.48930 5.51091 5.56195 5.57933 5.62644 5.92559 6.37097 6.49753 6.87997 7.33106 7.42478 8.25555 8.50003 9.39234 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008425 B = 0.005082 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.700943 B = 5508.610255 C = 8149.988567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.126 3.874 3 C -0.122 4.122 4 C 0.574 3.426 5 O -0.514 6.514 6 N -0.595 5.595 7 C 0.085 3.915 8 C -0.129 4.129 9 C -0.107 4.107 10 C -0.105 4.105 11 H 0.053 0.947 12 C -0.140 4.140 13 C 0.165 3.835 14 H 0.089 0.911 15 C -0.118 4.118 16 C 0.187 3.813 17 N -0.732 5.732 18 C -0.231 4.231 19 H 0.062 0.938 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.969 3.031 23 H -0.279 1.279 24 H -0.293 1.293 25 H -0.281 1.281 26 N -0.213 5.213 27 N -0.091 5.091 28 N -0.352 5.352 29 C 0.073 3.927 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.045 0.955 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.051 0.949 44 H -0.007 1.007 45 H 0.017 0.983 46 H 0.369 0.631 47 H 0.249 0.751 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.923 -9.823 2.685 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.012 4.012 3 C -0.262 4.262 4 C 0.361 3.639 5 O -0.390 6.390 6 N -0.328 5.328 7 C -0.038 4.038 8 C -0.167 4.167 9 C -0.144 4.144 10 C -0.124 4.124 11 H 0.072 0.928 12 C -0.198 4.198 13 C 0.062 3.938 14 H 0.107 0.893 15 C -0.155 4.155 16 C 0.061 3.939 17 N -0.373 5.373 18 C -0.363 4.363 19 H 0.080 0.920 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.798 3.202 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.208 1.208 26 N -0.085 5.085 27 N -0.070 5.070 28 N -0.138 5.138 29 C -0.066 4.066 30 H 0.106 0.894 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.011 0.989 45 H 0.035 0.965 46 H 0.200 0.800 47 H 0.058 0.942 48 H 0.124 0.876 49 H 0.136 0.864 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 20.762 -10.212 2.574 23.281 hybrid contribution -2.083 0.048 -0.502 2.143 sum 18.680 -10.164 2.072 21.367 Atomic orbital electron populations 1.20686 0.83634 1.05902 1.04745 1.22095 0.96743 0.86391 0.96020 1.21419 0.89423 0.95801 1.19531 1.17189 0.85459 0.83165 0.78119 1.91049 1.16924 1.81930 1.49060 1.47856 1.09646 1.05350 1.69912 1.22675 0.79400 1.03717 0.98011 1.21977 1.02271 0.95488 0.97007 1.21573 0.93877 0.96012 1.02955 1.21589 0.97461 0.96100 0.97269 0.92813 1.21750 1.01221 0.94124 1.02669 1.21303 0.94143 0.79975 0.98399 0.89346 1.22167 0.93718 1.00266 0.99372 1.20775 0.83076 0.95448 0.94633 1.42411 1.01649 1.84461 1.08784 1.19488 0.89015 1.37583 0.90218 0.91992 1.25450 0.97820 1.04310 0.99283 1.69831 1.10087 1.58813 1.23512 0.85277 0.77758 0.78154 0.78998 1.20574 1.21869 1.20768 1.74266 1.18781 1.04069 1.11432 1.81820 0.97604 1.03699 1.23883 1.50504 1.05227 1.09061 1.49014 1.22686 1.04069 0.73365 1.06473 0.89431 0.87174 0.89505 0.90389 0.86361 0.93636 0.88492 0.90703 0.90196 0.90884 0.91609 0.94104 0.89906 0.93078 0.98903 0.96497 0.79996 0.94245 0.87580 0.86444 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.31 9.64 71.23 0.69 -1.63 16 2 C 0.13 3.37 7.02 41.71 0.29 3.66 16 3 C -0.12 -3.82 6.71 40.82 0.27 -3.54 16 4 C 0.57 20.18 6.76 86.69 0.59 20.77 16 5 O -0.51 -21.48 8.03 -4.03 -0.03 -21.52 16 6 N -0.59 -17.86 2.93 -797.93 -2.34 -20.20 16 7 C 0.08 2.02 6.12 86.51 0.53 2.55 16 8 C -0.13 -2.65 6.10 30.82 0.19 -2.46 16 9 C -0.11 -2.09 5.16 30.62 0.16 -1.93 16 10 C -0.10 -2.75 1.87 -10.72 -0.02 -2.77 16 11 H 0.05 1.75 6.12 -2.39 -0.01 1.74 16 12 C -0.14 -3.35 8.95 71.98 0.64 -2.71 16 13 C 0.16 4.86 2.66 44.97 0.12 4.98 16 14 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 15 C -0.12 -4.51 4.12 30.59 0.13 -4.38 16 16 C 0.19 8.67 4.19 86.38 0.36 9.03 16 17 N -0.73 -41.37 5.55 -343.44 -1.91 -43.28 16 18 C -0.23 -13.94 9.99 84.03 0.84 -13.10 16 19 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 21 N -0.97 -62.27 13.06 21.65 0.28 -61.98 16 22 Si 0.97 48.23 29.55 68.60 2.03 50.26 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 25 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 26 N -0.21 -6.15 8.77 -50.00 -0.44 -6.59 16 27 N -0.09 -2.39 13.78 37.02 0.51 -1.88 16 28 N -0.35 -7.50 4.03 -355.11 -1.43 -8.93 16 29 C 0.07 0.68 11.33 127.77 1.45 2.12 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.11 1.82 7.18 -2.38 -0.02 1.80 16 32 H 0.09 2.89 6.33 -2.39 -0.02 2.88 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.12 3.09 4.09 -41.22 -0.17 2.93 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.04 1.18 6.86 -2.39 -0.02 1.16 16 42 H 0.08 3.55 5.67 -24.04 -0.14 3.42 16 43 H 0.05 1.92 7.17 -2.39 -0.02 1.91 16 44 H -0.01 -0.31 6.55 -2.39 -0.02 -0.33 16 45 H 0.02 0.85 5.50 -2.39 -0.01 0.84 16 46 H 0.37 22.29 7.67 -92.71 -0.71 21.58 16 47 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 48 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.12 0.70 8.14 -2.39 -0.02 0.69 16 50 H 0.12 0.60 7.15 -2.39 -0.02 0.58 16 Total: -1.00 -78.10 379.16 3.34 -74.76 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.03 Total: 32.99 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 6.70 Total: 6.38 kcal Atomic # 7 Polarization: -137.55 SS G_CDS: -5.32 Total: -142.87 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.03 Total: -21.52 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -78.10 3.34 -74.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263953165.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.419 kcal (2) G-P(sol) polarization free energy of solvation -78.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds