Wall clock time and date at job start Tue Mar 31 2020 20:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47256 * 2 1 4 4 C 1.53001 * 109.47091 * 240.00206 * 2 1 3 5 5 N 1.46503 * 109.46778 * 120.00205 * 2 1 3 6 6 C 1.34807 * 126.59337 * 75.00051 * 5 2 1 7 7 C 1.36597 * 106.83778 * 179.97438 * 6 5 2 8 8 C 1.47528 * 125.77192 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99806 * 353.40513 * 8 7 6 10 10 N 1.34771 * 120.00281 * 173.39876 * 8 7 6 11 11 C 1.46932 * 120.62800 * 354.70950 * 10 8 7 12 12 C 1.53189 * 108.77816 * 126.36755 * 11 10 8 13 13 C 1.53040 * 109.31611 * 54.63142 * 12 11 10 14 14 C 1.53048 * 109.53769 * 298.63940 * 13 12 11 15 15 H 1.09004 * 109.52135 * 301.39707 * 14 13 12 16 16 C 1.52993 * 109.49906 * 181.31636 * 14 13 12 17 17 N 1.46502 * 109.47187 * 175.16021 * 16 14 13 18 18 C 1.36932 * 119.99939 * 179.97438 * 17 16 14 19 19 H 1.08008 * 120.00328 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00076 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00001 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47042 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.46922 * 299.99702 * 22 20 18 25 25 H 1.48490 * 109.47334 * 60.00033 * 22 20 18 26 26 C 1.46927 * 120.63402 * 174.67915 * 10 8 7 27 27 N 1.34398 * 108.45903 * 0.24442 * 7 6 5 28 28 N 1.28758 * 109.52384 * 359.58214 * 27 7 6 29 29 H 1.08999 * 109.46822 * 300.00143 * 1 2 3 30 30 H 1.09002 * 109.46707 * 59.99638 * 1 2 3 31 31 H 1.08990 * 109.47133 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47147 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47067 * 299.99761 * 3 2 1 34 34 H 1.08999 * 109.47322 * 60.00163 * 3 2 1 35 35 H 1.09001 * 109.46607 * 299.99847 * 4 2 1 36 36 H 1.08999 * 109.47528 * 60.00058 * 4 2 1 37 37 H 1.08995 * 109.47241 * 180.02562 * 4 2 1 38 38 H 1.08004 * 126.58636 * 359.97438 * 6 5 2 39 39 H 1.09000 * 109.58263 * 246.15260 * 11 10 8 40 40 H 1.08994 * 109.58729 * 6.42915 * 11 10 8 41 41 H 1.09000 * 109.49843 * 174.58303 * 12 11 10 42 42 H 1.09002 * 109.49388 * 294.64630 * 12 11 10 43 43 H 1.08999 * 109.46264 * 178.61994 * 13 12 11 44 44 H 1.08997 * 109.45732 * 58.65294 * 13 12 11 45 45 H 1.09006 * 109.47220 * 55.15808 * 16 14 13 46 46 H 1.09003 * 109.47168 * 295.16223 * 16 14 13 47 47 H 0.97000 * 119.99830 * 359.97438 * 17 16 14 48 48 H 0.97002 * 120.00005 * 359.97438 * 21 20 18 49 49 H 1.08996 * 109.58867 * 113.84847 * 26 10 8 50 50 H 1.08997 * 109.58274 * 353.41852 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 2.0220 -2.0216 1.4104 7 6 2.5637 -2.2216 2.6484 8 6 2.7650 -3.5295 3.3006 9 8 2.3294 -4.5401 2.7836 10 7 3.4317 -3.6041 4.4694 11 6 4.0636 -2.4106 5.0484 12 6 3.5654 -2.2374 6.4866 13 6 3.8218 -3.5269 7.2699 14 6 3.0477 -4.6795 6.6260 15 1 1.9837 -4.4430 6.6162 16 6 3.2785 -5.9612 7.4289 17 7 2.4478 -7.0366 6.8816 18 6 2.4875 -8.2853 7.4422 19 1 3.1315 -8.4775 8.2876 20 6 1.6999 -9.3041 6.9240 21 7 0.9154 -9.0701 5.8934 22 14 1.7535 -11.0073 7.6892 23 1 0.8277 -11.9084 6.9568 24 1 3.1356 -11.5443 7.6055 25 1 1.3404 -10.9235 9.1130 26 6 3.5401 -4.8803 5.1894 27 7 2.8768 -1.0250 3.1742 28 7 2.5722 -0.0945 2.3380 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 1.6653 -2.7836 0.7333 39 1 5.1465 -2.5346 5.0493 40 1 3.7968 -1.5336 4.4588 41 1 4.0983 -1.4125 6.9594 42 1 2.4967 -2.0228 6.4780 43 1 3.4905 -3.3979 8.3003 44 1 4.8879 -3.7536 7.2570 45 1 3.0108 -5.7900 8.4716 46 1 4.3289 -6.2454 7.3655 47 1 1.8696 -6.8641 6.1221 48 1 0.8873 -8.1855 5.4963 49 1 4.5803 -5.2057 5.2018 50 1 2.9257 -5.6323 4.6943 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266791164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:50 Heat of formation + Delta-G solvation = 76.840349 kcal Electronic energy + Delta-G solvation = -29591.682346 eV Core-core repulsion = 25656.686505 eV Total energy + Delta-G solvation = -3934.995841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.56720 -39.83628 -37.85370 -37.44750 -35.03268 -33.08974 -32.25476 -31.63206 -31.03906 -29.37560 -28.14375 -28.08019 -25.78795 -25.23680 -24.07201 -22.99407 -22.81270 -21.39129 -20.86625 -20.05074 -19.03085 -17.46116 -17.12697 -16.59155 -16.33404 -15.98922 -15.19620 -15.03209 -14.78227 -14.63463 -14.55351 -14.23654 -14.07793 -13.74967 -13.46566 -13.28391 -13.10740 -13.01909 -12.92524 -12.88445 -12.53997 -12.43011 -12.39025 -12.28279 -12.01809 -11.92765 -11.57465 -11.15661 -10.86396 -10.66900 -10.62863 -10.59380 -10.45236 -10.18988 -10.13858 -9.88042 -9.66988 -9.46796 -9.05105 -8.78947 -8.40175 -6.89193 -5.99046 -2.98531 0.93610 1.56836 1.66330 3.07400 3.31579 3.57894 3.62384 3.73268 3.79783 3.98676 4.01421 4.12900 4.41988 4.68477 4.74459 4.80609 4.82701 4.88735 4.96992 4.99374 5.02439 5.10099 5.12548 5.14554 5.18709 5.27232 5.34091 5.36662 5.49724 5.51548 5.62786 5.72329 5.73185 5.89734 5.98468 6.03544 6.07984 6.13381 6.18907 6.23221 6.33879 6.47232 6.52253 6.75052 6.81420 6.90966 7.51189 7.77188 7.90577 8.27001 8.87144 9.34866 10.21110 10.36387 11.49553 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.002519 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.994950 B =11113.681110 C =12355.054679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 C -0.148 4.148 4 C -0.164 4.164 5 N -0.349 5.349 6 C 0.093 3.907 7 C -0.090 4.090 8 C 0.597 3.403 9 O -0.533 6.533 10 N -0.593 5.593 11 C 0.069 3.931 12 C -0.127 4.127 13 C -0.113 4.113 14 C -0.108 4.108 15 H 0.072 0.928 16 C 0.166 3.834 17 N -0.744 5.744 18 C -0.332 4.332 19 H 0.063 0.937 20 C -0.047 4.047 21 N -0.943 5.943 22 Si 1.081 2.919 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.296 1.296 26 C 0.122 3.878 27 N -0.207 5.207 28 N -0.067 5.067 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.202 0.798 39 H 0.060 0.940 40 H 0.139 0.861 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.022 0.978 46 H 0.021 0.979 47 H 0.368 0.632 48 H 0.256 0.744 49 H 0.068 0.932 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.555 25.372 -14.085 29.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.206 4.206 4 C -0.222 4.222 5 N -0.136 5.136 6 C -0.063 4.063 7 C -0.229 4.229 8 C 0.382 3.618 9 O -0.409 6.409 10 N -0.325 5.325 11 C -0.054 4.054 12 C -0.165 4.165 13 C -0.151 4.151 14 C -0.127 4.127 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.390 5.390 18 C -0.463 4.463 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.589 5.589 22 Si 0.912 3.088 23 H -0.211 1.211 24 H -0.223 1.223 25 H -0.224 1.224 26 C 0.000 4.000 27 N -0.080 5.080 28 N -0.045 5.045 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.219 0.781 39 H 0.078 0.922 40 H 0.155 0.845 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.040 0.960 46 H 0.039 0.961 47 H 0.201 0.799 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.226 24.581 -13.646 28.299 hybrid contribution 0.223 0.726 -0.461 0.889 sum 3.449 25.308 -14.106 29.178 Atomic orbital electron populations 1.22299 0.91749 1.03905 1.04079 1.21119 0.95293 0.94095 0.80814 1.21992 1.02525 0.92219 1.03857 1.22309 1.02696 1.01445 0.95738 1.50776 1.42131 1.05226 1.15422 1.23256 0.98152 0.86895 0.98006 1.21526 1.12191 0.93599 0.95613 1.16861 0.78401 0.85718 0.80810 1.90858 1.50966 1.35130 1.63921 1.47931 1.52482 1.11140 1.20919 1.22766 0.96806 0.89984 0.95879 1.21827 1.01801 0.97783 0.95130 1.21543 1.00336 0.94121 0.99117 1.21703 1.00367 0.96126 0.94522 0.90979 1.20574 0.94495 0.86210 0.94889 1.42424 1.50784 1.07671 1.38159 1.20013 1.24233 0.88419 1.13640 0.91850 1.25771 0.96566 1.03396 0.98693 1.70850 1.40369 1.23880 1.23777 0.83238 0.75609 0.75263 0.74713 1.21080 1.22329 1.22369 1.21737 1.01995 0.84482 0.91749 1.74116 1.13921 0.98280 1.21670 1.81942 1.15328 1.17497 0.89757 0.91171 0.89585 0.91200 0.91221 0.90106 0.90611 0.90992 0.89335 0.91111 0.78129 0.92200 0.84478 0.91024 0.91766 0.91686 0.91840 0.95984 0.96135 0.79863 0.93239 0.91421 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 8.74 37.16 0.32 -0.41 16 2 C 0.17 0.93 1.25 -131.81 -0.16 0.77 16 3 C -0.15 -0.69 8.11 37.16 0.30 -0.39 16 4 C -0.16 -0.63 8.30 37.16 0.31 -0.32 16 5 N -0.35 -3.19 3.44 -48.35 -0.17 -3.36 16 6 C 0.09 0.99 10.43 -16.84 -0.18 0.82 16 7 C -0.09 -1.24 6.75 -83.55 -0.56 -1.80 16 8 C 0.60 10.08 7.69 -12.48 -0.10 9.98 16 9 O -0.53 -10.73 16.31 5.29 0.09 -10.64 16 10 N -0.59 -9.54 2.97 -174.00 -0.52 -10.06 16 11 C 0.07 0.91 6.32 -3.71 -0.02 0.89 16 12 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 13 C -0.11 -1.57 5.17 -26.69 -0.14 -1.71 16 14 C -0.11 -1.90 2.38 -90.50 -0.21 -2.11 16 15 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 16 C 0.17 3.55 5.65 -4.04 -0.02 3.53 16 17 N -0.74 -19.89 5.37 -59.91 -0.32 -20.21 16 18 C -0.33 -9.84 9.99 -15.06 -0.15 -9.99 16 19 H 0.06 1.84 7.83 -52.48 -0.41 1.42 16 20 C -0.05 -1.42 5.50 -17.43 -0.10 -1.51 16 21 N -0.94 -30.65 13.70 55.49 0.76 -29.89 16 22 Si 1.08 26.98 29.92 -169.99 -5.09 21.90 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.12 2.21 5.50 -3.71 -0.02 2.19 16 27 N -0.21 -2.73 8.70 32.85 0.29 -2.44 16 28 N -0.07 -0.78 12.91 60.35 0.78 0.00 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 35 H 0.07 0.27 7.44 -51.93 -0.39 -0.11 16 36 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.20 1.67 7.63 -52.48 -0.40 1.27 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.14 1.79 3.64 -123.58 -0.45 1.34 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.37 10.20 5.72 -40.82 -0.23 9.97 16 48 H 0.26 8.31 6.77 -40.82 -0.28 8.04 16 49 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.10 2.14 6.24 -51.93 -0.32 1.81 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -36.56 396.11 -7.56 -44.13 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.46 Total: 6.43 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -0.89 Total: -1.82 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: 0.82 Total: -65.95 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 26.98 SS G_CDS: -5.09 Total: 21.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.56 -7.56 -44.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266791164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.966 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds