Wall clock time and date at job start Tue Mar 31 2020 20:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47256 * 2 1 4 4 C 1.53001 * 109.47091 * 240.00206 * 2 1 3 5 5 N 1.46503 * 109.46778 * 120.00205 * 2 1 3 6 6 C 1.34807 * 126.59337 * 75.00051 * 5 2 1 7 7 C 1.36597 * 106.83778 * 179.97438 * 6 5 2 8 8 C 1.47528 * 125.77192 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99806 * 353.40513 * 8 7 6 10 10 N 1.34771 * 120.00281 * 173.39876 * 8 7 6 11 11 C 1.46932 * 120.62800 * 354.70950 * 10 8 7 12 12 C 1.53189 * 108.77816 * 126.36755 * 11 10 8 13 13 C 1.53040 * 109.31611 * 54.63142 * 12 11 10 14 14 C 1.53048 * 109.53769 * 298.63940 * 13 12 11 15 15 H 1.09004 * 109.52135 * 301.39707 * 14 13 12 16 16 C 1.52993 * 109.49906 * 181.31636 * 14 13 12 17 17 N 1.46502 * 109.47187 * 175.16021 * 16 14 13 18 18 C 1.36932 * 119.99939 * 179.97438 * 17 16 14 19 19 H 1.08008 * 120.00328 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00076 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00001 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47042 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.46922 * 299.99702 * 22 20 18 25 25 H 1.48490 * 109.47334 * 60.00033 * 22 20 18 26 26 C 1.46927 * 120.63402 * 174.67915 * 10 8 7 27 27 N 1.34398 * 108.45903 * 0.24442 * 7 6 5 28 28 N 1.28758 * 109.52384 * 359.58214 * 27 7 6 29 29 H 1.08999 * 109.46822 * 300.00143 * 1 2 3 30 30 H 1.09002 * 109.46707 * 59.99638 * 1 2 3 31 31 H 1.08990 * 109.47133 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47147 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47067 * 299.99761 * 3 2 1 34 34 H 1.08999 * 109.47322 * 60.00163 * 3 2 1 35 35 H 1.09001 * 109.46607 * 299.99847 * 4 2 1 36 36 H 1.08999 * 109.47528 * 60.00058 * 4 2 1 37 37 H 1.08995 * 109.47241 * 180.02562 * 4 2 1 38 38 H 1.08004 * 126.58636 * 359.97438 * 6 5 2 39 39 H 1.09000 * 109.58263 * 246.15260 * 11 10 8 40 40 H 1.08994 * 109.58729 * 6.42915 * 11 10 8 41 41 H 1.09000 * 109.49843 * 174.58303 * 12 11 10 42 42 H 1.09002 * 109.49388 * 294.64630 * 12 11 10 43 43 H 1.08999 * 109.46264 * 178.61994 * 13 12 11 44 44 H 1.08997 * 109.45732 * 58.65294 * 13 12 11 45 45 H 1.09006 * 109.47220 * 55.15808 * 16 14 13 46 46 H 1.09003 * 109.47168 * 295.16223 * 16 14 13 47 47 H 0.97000 * 119.99830 * 359.97438 * 17 16 14 48 48 H 0.97002 * 120.00005 * 359.97438 * 21 20 18 49 49 H 1.08996 * 109.58867 * 113.84847 * 26 10 8 50 50 H 1.08997 * 109.58274 * 353.41852 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 2.0220 -2.0216 1.4104 7 6 2.5637 -2.2216 2.6484 8 6 2.7650 -3.5295 3.3006 9 8 2.3294 -4.5401 2.7836 10 7 3.4317 -3.6041 4.4694 11 6 4.0636 -2.4106 5.0484 12 6 3.5654 -2.2374 6.4866 13 6 3.8218 -3.5269 7.2699 14 6 3.0477 -4.6795 6.6260 15 1 1.9837 -4.4430 6.6162 16 6 3.2785 -5.9612 7.4289 17 7 2.4478 -7.0366 6.8816 18 6 2.4875 -8.2853 7.4422 19 1 3.1315 -8.4775 8.2876 20 6 1.6999 -9.3041 6.9240 21 7 0.9154 -9.0701 5.8934 22 14 1.7535 -11.0073 7.6892 23 1 0.8277 -11.9084 6.9568 24 1 3.1356 -11.5443 7.6055 25 1 1.3404 -10.9235 9.1130 26 6 3.5401 -4.8803 5.1894 27 7 2.8768 -1.0250 3.1742 28 7 2.5722 -0.0945 2.3380 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 1.6653 -2.7836 0.7333 39 1 5.1465 -2.5346 5.0493 40 1 3.7968 -1.5336 4.4588 41 1 4.0983 -1.4125 6.9594 42 1 2.4967 -2.0228 6.4780 43 1 3.4905 -3.3979 8.3003 44 1 4.8879 -3.7536 7.2570 45 1 3.0108 -5.7900 8.4716 46 1 4.3289 -6.2454 7.3655 47 1 1.8696 -6.8641 6.1221 48 1 0.8873 -8.1855 5.4963 49 1 4.5803 -5.2057 5.2018 50 1 2.9257 -5.6323 4.6943 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266791164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:48 Heat of formation + Delta-G solvation = 52.101163 kcal Electronic energy + Delta-G solvation = -29592.755118 eV Core-core repulsion = 25656.686505 eV Total energy + Delta-G solvation = -3936.068612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.47061 -41.11807 -38.92988 -38.35872 -36.88413 -34.69190 -33.14168 -33.06275 -32.16550 -31.08059 -28.52935 -28.44857 -27.21249 -26.74839 -25.16403 -24.73328 -23.91071 -22.79413 -21.80166 -21.26752 -20.12364 -19.34430 -18.27434 -17.69163 -17.20088 -17.16711 -16.71185 -16.17519 -16.01280 -15.95950 -15.68884 -15.32378 -15.23292 -15.00388 -14.98227 -14.35980 -14.27015 -14.06745 -13.85311 -13.67614 -13.42592 -13.37611 -13.19796 -13.07397 -12.79799 -12.70149 -12.63805 -12.49274 -12.42970 -12.08886 -12.04085 -11.91514 -11.84830 -11.58179 -11.50072 -11.33725 -11.21169 -10.94710 -10.80289 -10.46160 -9.70114 -9.12952 -8.41183 -5.34972 0.06754 0.48718 0.95019 1.56957 1.68636 1.84164 1.84886 2.09598 2.71822 2.99180 3.17556 3.39426 3.52007 3.61634 3.63374 3.74362 3.80044 3.85082 3.87035 4.02064 4.08456 4.11220 4.20918 4.29010 4.46929 4.54481 4.56867 4.61818 4.65741 4.67059 4.70823 4.74994 4.77510 4.78701 4.85019 4.93344 5.03759 5.05728 5.10108 5.16543 5.17229 5.24458 5.30624 5.42086 5.46622 5.56962 5.61644 6.26138 6.45828 6.77069 7.01487 7.07228 7.97275 8.10215 9.10123 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.002519 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.994950 B =11113.681110 C =12355.054679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 C -0.146 4.146 4 C -0.162 4.162 5 N -0.334 5.334 6 C 0.106 3.894 7 C -0.115 4.115 8 C 0.591 3.409 9 O -0.579 6.579 10 N -0.593 5.593 11 C 0.066 3.934 12 C -0.120 4.120 13 C -0.106 4.106 14 C -0.094 4.094 15 H 0.051 0.949 16 C 0.165 3.835 17 N -0.759 5.759 18 C -0.336 4.336 19 H 0.070 0.930 20 C -0.109 4.109 21 N -0.975 5.975 22 Si 1.133 2.867 23 H -0.293 1.293 24 H -0.275 1.275 25 H -0.275 1.275 26 C 0.130 3.870 27 N -0.216 5.216 28 N -0.073 5.073 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.063 0.937 38 H 0.222 0.778 39 H 0.075 0.925 40 H 0.144 0.856 41 H 0.106 0.894 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.357 0.643 48 H 0.240 0.760 49 H 0.073 0.927 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 27.293 -14.316 31.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.078 3.922 3 C -0.204 4.204 4 C -0.220 4.220 5 N -0.120 5.120 6 C -0.052 4.052 7 C -0.254 4.254 8 C 0.378 3.622 9 O -0.458 6.458 10 N -0.324 5.324 11 C -0.056 4.056 12 C -0.158 4.158 13 C -0.144 4.144 14 C -0.114 4.114 15 H 0.069 0.931 16 C 0.038 3.962 17 N -0.404 5.404 18 C -0.467 4.467 19 H 0.088 0.912 20 C -0.300 4.300 21 N -0.623 5.623 22 Si 0.956 3.044 23 H -0.219 1.219 24 H -0.201 1.201 25 H -0.201 1.201 26 C 0.007 3.993 27 N -0.089 5.089 28 N -0.052 5.052 29 H 0.075 0.925 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.238 0.762 39 H 0.094 0.906 40 H 0.161 0.839 41 H 0.124 0.876 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.189 0.811 48 H 0.050 0.950 49 H 0.091 0.909 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.167 26.599 -13.847 30.276 hybrid contribution -0.049 0.267 -0.462 0.536 sum 4.118 26.866 -14.309 30.716 Atomic orbital electron populations 1.22330 0.90686 1.03932 1.04869 1.21634 0.96075 0.94571 0.79913 1.22023 1.01984 0.91609 1.04744 1.22355 1.02260 1.01699 0.95671 1.51137 1.40549 1.04735 1.15579 1.23519 0.96612 0.87886 0.97165 1.21191 1.14808 0.92521 0.96919 1.17307 0.77627 0.86464 0.80763 1.90822 1.52848 1.36947 1.65175 1.48016 1.52419 1.11220 1.20725 1.23008 0.97482 0.88787 0.96350 1.21807 1.01585 0.97956 0.94440 1.21524 1.00440 0.92914 0.99474 1.21549 0.99825 0.95968 0.94037 0.93058 1.20756 0.93686 0.86407 0.95301 1.42685 1.51398 1.08345 1.37977 1.20431 1.23405 0.89575 1.13305 0.91164 1.27385 0.96327 1.07595 0.98691 1.70982 1.42536 1.23095 1.25665 0.82592 0.76420 0.70625 0.74740 1.21927 1.20141 1.20086 1.21443 1.01188 0.84825 0.91866 1.74031 1.14497 0.98024 1.22337 1.81857 1.15544 1.17362 0.90467 0.92515 0.86656 0.91577 0.92059 0.87115 0.91838 0.90906 0.86566 0.91834 0.76165 0.90627 0.83916 0.87595 0.92913 0.90498 0.90343 0.95556 0.95520 0.81067 0.94951 0.90913 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.74 71.98 0.63 -0.49 16 2 C 0.16 1.43 1.25 3.60 0.00 1.44 16 3 C -0.15 -1.06 8.11 71.98 0.58 -0.47 16 4 C -0.16 -0.85 8.30 71.98 0.60 -0.25 16 5 N -0.33 -5.78 3.44 -306.89 -1.06 -6.83 16 6 C 0.11 2.22 10.43 83.85 0.87 3.10 16 7 C -0.12 -3.21 6.75 40.82 0.28 -2.94 16 8 C 0.59 20.90 7.69 86.69 0.67 21.57 16 9 O -0.58 -24.90 16.31 -4.00 -0.07 -24.96 16 10 N -0.59 -19.59 2.97 -822.68 -2.45 -22.03 16 11 C 0.07 1.66 6.32 86.36 0.55 2.21 16 12 C -0.12 -2.74 6.08 30.67 0.19 -2.55 16 13 C -0.11 -2.74 5.17 30.62 0.16 -2.58 16 14 C -0.09 -3.37 2.38 -10.72 -0.03 -3.39 16 15 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 16 C 0.17 7.11 5.65 86.38 0.49 7.60 16 17 N -0.76 -41.87 5.37 -343.45 -1.85 -43.72 16 18 C -0.34 -20.15 9.99 84.03 0.84 -19.31 16 19 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.11 -6.75 5.50 84.86 0.47 -6.28 16 21 N -0.97 -65.41 13.70 21.65 0.30 -65.12 16 22 Si 1.13 54.46 29.92 68.60 2.05 56.52 16 23 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 26 C 0.13 4.89 5.50 86.36 0.48 5.37 16 27 N -0.22 -5.62 8.70 -49.99 -0.43 -6.05 16 28 N -0.07 -1.66 12.91 37.02 0.48 -1.18 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.06 0.64 8.06 -2.39 -0.02 0.62 16 35 H 0.07 0.40 7.44 -2.39 -0.02 0.38 16 36 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.22 3.58 7.63 -2.91 -0.02 3.56 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.14 3.59 3.64 -95.09 -0.35 3.24 16 41 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.36 21.00 5.72 -92.71 -0.53 20.47 16 48 H 0.24 16.41 6.77 -92.71 -0.63 15.78 16 49 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 50 H 0.05 2.58 6.24 -2.39 -0.01 2.56 16 Total: -1.00 -82.80 396.11 3.95 -78.85 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.21 Total: 31.53 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 6.77 Total: 3.00 kcal Atomic # 7 Polarization: -139.93 SS G_CDS: -5.01 Total: -144.93 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.07 Total: -24.96 kcal Atomic # 14 Polarization: 54.46 SS G_CDS: 2.05 Total: 56.52 kcal Total: -82.80 3.95 -78.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266791164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.952 kcal (2) G-P(sol) polarization free energy of solvation -82.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds