Wall clock time and date at job start Tue Mar 31 2020 18:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30858 * 125.41797 * 2 1 4 4 C 1.33317 * 109.68093 * 179.74215 * 3 2 1 5 5 C 1.36657 * 107.78832 * 0.37557 * 4 3 2 6 6 C 1.46771 * 126.84545 * 179.89188 * 5 4 3 7 7 O 1.21679 * 119.99819 * 188.22861 * 6 5 4 8 8 N 1.34782 * 119.99640 * 8.23454 * 6 5 4 9 9 C 1.46493 * 120.00114 * 5.70182 * 8 6 5 10 10 C 1.46496 * 119.99756 * 185.70429 * 8 6 5 11 11 C 1.53003 * 109.47390 * 89.99544 * 10 8 6 12 12 N 1.46898 * 109.47205 * 179.97438 * 11 10 8 13 13 C 1.46901 * 110.99826 * 170.00539 * 12 11 10 14 14 C 1.53237 * 109.33669 * 172.74725 * 13 12 11 15 15 N 1.47075 * 108.52390 * 53.82863 * 14 13 12 16 16 C 1.36940 * 120.88066 * 128.78961 * 15 14 13 17 17 H 1.08005 * 119.99798 * 207.58701 * 16 15 14 18 18 C 1.38809 * 120.00140 * 27.59065 * 16 15 14 19 19 N 1.31622 * 119.99800 * 7.33450 * 18 16 15 20 20 Si 1.86793 * 120.00101 * 187.33293 * 18 16 15 21 21 H 1.48503 * 109.47300 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47107 * 120.00321 * 20 18 16 23 23 H 1.48504 * 109.47288 * 239.99848 * 20 18 16 24 24 C 1.47080 * 118.24040 * 308.81369 * 15 14 13 25 25 C 1.46903 * 111.00103 * 45.70091 * 12 11 10 26 26 N 1.34488 * 125.41580 * 179.97438 * 2 1 3 27 27 C 1.46498 * 126.47562 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.47138 * 270.02402 * 1 2 3 29 29 H 1.09003 * 109.47262 * 30.02236 * 1 2 3 30 30 H 1.08999 * 109.47102 * 150.02486 * 1 2 3 31 31 H 1.08006 * 126.10185 * 180.27063 * 4 3 2 32 32 H 1.09001 * 109.47714 * 274.14284 * 9 8 6 33 33 H 1.09004 * 109.47214 * 34.14236 * 9 8 6 34 34 H 1.08999 * 109.47156 * 154.13920 * 9 8 6 35 35 H 1.09008 * 109.47044 * 330.00236 * 10 8 6 36 36 H 1.08998 * 109.47087 * 210.00055 * 10 8 6 37 37 H 1.09008 * 109.46462 * 60.00335 * 11 10 8 38 38 H 1.08998 * 109.47423 * 300.00305 * 11 10 8 39 39 H 1.09000 * 109.49410 * 52.79004 * 13 12 11 40 40 H 1.08996 * 109.48944 * 292.70250 * 13 12 11 41 41 H 1.09001 * 109.62740 * 173.53654 * 14 13 12 42 42 H 1.09005 * 109.63011 * 293.92070 * 14 13 12 43 43 H 0.97003 * 119.99623 * 179.97438 * 19 18 16 44 44 H 1.08989 * 109.63038 * 170.89362 * 24 15 14 45 45 H 1.08999 * 109.62602 * 291.47928 * 24 15 14 46 46 H 1.09002 * 109.49023 * 67.29239 * 25 12 11 47 47 H 1.08997 * 109.51323 * 307.22962 * 25 12 11 48 48 H 1.08999 * 109.47469 * 274.74532 * 27 26 2 49 49 H 1.08997 * 109.47094 * 34.74700 * 27 26 2 50 50 H 1.09002 * 109.47500 * 154.74001 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0056 5 6 3.5975 -0.6608 0.0009 6 6 4.8029 -1.4983 0.0021 7 8 4.7079 -2.7014 -0.1534 8 7 6.0148 -0.9348 0.1757 9 6 6.1210 0.4927 0.4872 10 6 7.2259 -1.7497 0.0527 11 6 7.7084 -1.7305 -1.3992 12 7 8.9232 -2.5472 -1.5224 13 6 9.2819 -2.7478 -2.9327 14 6 10.6440 -3.4449 -3.0156 15 7 10.5909 -4.6721 -2.2068 16 6 10.9793 -5.8764 -2.7304 17 1 10.5518 -6.7930 -2.3516 18 6 11.9224 -5.9190 -3.7480 19 7 12.5492 -4.8199 -4.1108 20 14 12.3022 -7.5361 -4.6024 21 1 11.4683 -8.6147 -4.0138 22 1 12.0011 -7.4130 -6.0513 23 1 13.7388 -7.8659 -4.4217 24 6 10.1090 -4.5718 -0.8208 25 6 8.7679 -3.8304 -0.8242 26 7 2.2864 -1.0960 0.0005 27 6 1.8311 -2.4885 0.0006 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 4.3978 1.3722 0.0111 32 1 6.1166 1.0681 -0.4385 33 1 5.2754 0.7935 1.1059 34 1 7.0499 0.6788 1.0263 35 1 7.0053 -2.7754 0.3486 36 1 8.0039 -1.3443 0.6995 37 1 7.9290 -0.7048 -1.6951 38 1 6.9304 -2.1359 -2.0460 39 1 9.3363 -1.7820 -3.4351 40 1 8.5262 -3.3674 -3.4155 41 1 10.8626 -3.6992 -4.0528 42 1 11.4187 -2.7820 -2.6301 43 1 13.2085 -4.8497 -4.8217 44 1 9.9739 -5.5710 -0.4069 45 1 10.8317 -4.0185 -0.2211 46 1 8.0194 -4.4349 -1.3365 47 1 8.4493 -3.6501 0.2024 48 1 1.6369 -2.8072 1.0247 49 1 0.9158 -2.5714 -0.5854 50 1 2.6016 -3.1228 -0.4375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267574636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:33 Heat of formation + Delta-G solvation = 89.081852 kcal Electronic energy + Delta-G solvation = -29471.247813 eV Core-core repulsion = 25536.782804 eV Total energy + Delta-G solvation = -3934.465009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.65901 -39.83759 -38.09510 -36.19954 -34.60615 -34.13550 -32.44190 -31.40629 -30.34002 -29.26410 -28.06468 -27.39442 -26.90256 -25.75793 -23.68154 -22.68704 -22.34135 -21.53114 -20.34256 -19.61689 -19.00464 -17.37628 -17.00751 -16.84038 -16.53754 -16.15089 -15.45200 -14.91346 -14.63086 -14.52111 -14.34347 -14.12423 -13.87211 -13.73117 -13.56702 -13.42255 -13.37357 -13.26163 -13.20413 -12.92237 -12.79611 -12.75671 -12.30379 -11.93696 -11.77825 -11.36274 -11.07277 -10.86463 -10.70382 -10.60657 -10.42180 -10.24958 -10.10833 -10.00935 -9.98525 -9.73225 -9.61991 -8.92863 -8.74316 -8.49082 -7.79005 -6.60654 -5.72679 -3.19245 0.99683 2.08410 2.47486 2.88056 3.04222 3.38651 3.45675 3.47919 3.97325 4.14106 4.42697 4.48125 4.52762 4.53467 4.77588 4.79244 4.89482 5.00356 5.02927 5.05795 5.11278 5.22695 5.25533 5.38082 5.39700 5.44646 5.46682 5.57066 5.76155 5.87846 5.95890 5.97836 6.00314 6.14946 6.20946 6.29547 6.33092 6.42258 6.58464 6.67862 6.75594 6.96504 7.05867 7.34197 7.56104 7.62284 7.71003 7.77760 7.87677 7.89373 8.50084 9.26456 9.88042 10.45964 11.34089 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023949 B = 0.002190 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.864823 B =12780.411467 C =13301.477463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.225 3.775 3 N -0.496 5.496 4 C 0.021 3.979 5 C -0.086 4.086 6 C 0.592 3.408 7 O -0.542 6.542 8 N -0.600 5.600 9 C 0.059 3.941 10 C 0.114 3.886 11 C 0.041 3.959 12 N -0.528 5.528 13 C 0.036 3.964 14 C 0.174 3.826 15 N -0.597 5.597 16 C -0.244 4.244 17 H 0.066 0.934 18 C -0.003 4.003 19 N -0.909 5.909 20 Si 0.907 3.093 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.149 3.851 25 C 0.037 3.963 26 N -0.424 5.424 27 C 0.061 3.939 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.197 0.803 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.059 0.941 40 H 0.024 0.976 41 H 0.102 0.898 42 H 0.024 0.976 43 H 0.253 0.747 44 H 0.054 0.946 45 H 0.026 0.974 46 H 0.029 0.971 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.087 0.913 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.216 12.477 10.548 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.037 4.037 3 N -0.215 5.215 4 C -0.132 4.132 5 C -0.203 4.203 6 C 0.381 3.619 7 O -0.420 6.420 8 N -0.332 5.332 9 C -0.084 4.084 10 C -0.008 4.008 11 C -0.088 4.088 12 N -0.254 5.254 13 C -0.093 4.093 14 C 0.048 3.952 15 N -0.321 5.321 16 C -0.374 4.374 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.737 3.263 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.022 3.978 25 C -0.093 4.093 26 N -0.104 5.104 27 C -0.081 4.081 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.213 0.787 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.119 0.881 42 H 0.042 0.958 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.047 0.953 47 H 0.083 0.917 48 H 0.099 0.901 49 H 0.105 0.895 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.082 12.669 10.561 27.562 hybrid contribution -0.096 -1.926 -0.940 2.146 sum -22.178 10.743 9.621 26.454 Atomic orbital electron populations 1.20282 0.84366 1.04412 1.03899 1.23480 0.95972 0.81250 1.03006 1.70169 1.02264 1.28068 1.20971 1.23605 0.95529 0.91778 1.02327 1.20706 0.85263 0.94999 1.19284 1.16798 0.82015 0.86345 0.76765 1.90792 1.86240 1.14398 1.50572 1.47442 1.05426 1.10512 1.69848 1.22497 1.04079 0.80554 1.01276 1.21818 0.84551 0.96766 0.97636 1.22425 0.92031 0.98836 0.95525 1.62101 1.31183 1.16790 1.15322 1.22944 1.00987 0.99087 0.86308 1.21038 0.89356 0.85818 0.98979 1.44123 1.75798 1.05243 1.06914 1.19291 1.16514 0.85141 1.16460 0.91610 1.25107 0.96637 0.97132 1.01137 1.69930 1.27880 1.25949 1.31788 0.86140 0.77806 0.83175 0.79189 1.20371 1.21683 1.21644 1.20991 0.91871 0.96885 0.88042 1.22747 0.99610 0.89776 0.97141 1.45084 1.05120 1.08405 1.51819 1.22362 1.02767 0.78944 1.04050 0.89694 0.88718 0.90538 0.78672 0.91647 0.89645 0.90038 0.88972 0.89124 0.91114 0.95289 0.92253 0.95790 0.88053 0.95769 0.93676 0.92705 0.95638 0.95310 0.91677 0.90144 0.89481 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.18 36.01 0.37 0.00 16 2 C 0.22 2.17 7.88 -155.62 -1.23 0.95 16 3 N -0.50 -5.65 11.20 -10.58 -0.12 -5.77 16 4 C 0.02 0.23 9.77 -17.48 -0.17 0.05 16 5 C -0.09 -1.02 6.73 -82.14 -0.55 -1.57 16 6 C 0.59 7.88 7.63 -12.81 -0.10 7.78 16 7 O -0.54 -8.82 14.33 5.21 0.07 -8.74 16 8 N -0.60 -6.75 2.87 -183.10 -0.53 -7.28 16 9 C 0.06 0.42 8.73 59.84 0.52 0.95 16 10 C 0.11 1.46 4.74 -4.04 -0.02 1.44 16 11 C 0.04 0.62 5.59 -3.82 -0.02 0.60 16 12 N -0.53 -9.70 4.78 -234.32 -1.12 -10.82 16 13 C 0.04 0.74 5.58 -3.70 -0.02 0.72 16 14 C 0.17 4.33 5.40 -3.61 -0.02 4.31 16 15 N -0.60 -15.56 3.05 -172.02 -0.52 -16.09 16 16 C -0.24 -6.87 9.67 -15.06 -0.15 -7.01 16 17 H 0.07 1.82 7.84 -52.48 -0.41 1.41 16 18 C 0.00 -0.08 5.16 -17.43 -0.09 -0.17 16 19 N -0.91 -26.64 10.65 55.49 0.59 -26.05 16 20 Si 0.91 22.08 29.56 -169.99 -5.02 17.05 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 C 0.15 3.25 6.69 -3.60 -0.02 3.23 16 25 C 0.04 0.69 5.04 -3.70 -0.02 0.67 16 26 N -0.42 -4.43 3.17 -117.27 -0.37 -4.80 16 27 C 0.06 0.48 10.62 59.85 0.64 1.12 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.26 7.13 -51.93 -0.37 -0.11 16 31 H 0.20 1.49 4.49 -52.48 -0.24 1.26 16 32 H 0.07 0.41 7.44 -51.93 -0.39 0.02 16 33 H 0.09 0.55 5.22 -51.93 -0.27 0.28 16 34 H 0.08 0.47 7.84 -51.93 -0.41 0.07 16 35 H 0.09 1.35 5.39 -51.92 -0.28 1.07 16 36 H 0.09 1.02 7.86 -51.93 -0.41 0.61 16 37 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 38 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 2.79 5.85 -51.93 -0.30 2.49 16 42 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 44 H 0.05 1.15 7.95 -51.94 -0.41 0.74 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 1.05 5.73 -51.93 -0.30 0.75 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.09 0.43 7.17 -51.93 -0.37 0.06 16 50 H 0.11 1.15 6.12 -51.93 -0.32 0.83 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -35.05 386.03 -9.92 -44.97 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.83 Total: -1.35 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -0.88 Total: 13.06 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -2.07 Total: -70.80 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.05 -9.92 -44.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267574636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.049 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds