Wall clock time and date at job start Tue Mar 31 2020 18:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30858 * 125.41797 * 2 1 4 4 C 1.33317 * 109.68093 * 179.74215 * 3 2 1 5 5 C 1.36657 * 107.78832 * 0.37557 * 4 3 2 6 6 C 1.46771 * 126.84545 * 179.89188 * 5 4 3 7 7 O 1.21679 * 119.99819 * 188.22861 * 6 5 4 8 8 N 1.34782 * 119.99640 * 8.23454 * 6 5 4 9 9 C 1.46493 * 120.00114 * 5.70182 * 8 6 5 10 10 C 1.46496 * 119.99756 * 185.70429 * 8 6 5 11 11 C 1.53003 * 109.47390 * 89.99544 * 10 8 6 12 12 N 1.46898 * 109.47205 * 179.97438 * 11 10 8 13 13 C 1.46901 * 110.99826 * 170.00539 * 12 11 10 14 14 C 1.53237 * 109.33669 * 172.74725 * 13 12 11 15 15 N 1.47075 * 108.52390 * 53.82863 * 14 13 12 16 16 C 1.36940 * 120.88066 * 128.78961 * 15 14 13 17 17 H 1.08005 * 119.99798 * 207.58701 * 16 15 14 18 18 C 1.38809 * 120.00140 * 27.59065 * 16 15 14 19 19 N 1.31622 * 119.99800 * 7.33450 * 18 16 15 20 20 Si 1.86793 * 120.00101 * 187.33293 * 18 16 15 21 21 H 1.48503 * 109.47300 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47107 * 120.00321 * 20 18 16 23 23 H 1.48504 * 109.47288 * 239.99848 * 20 18 16 24 24 C 1.47080 * 118.24040 * 308.81369 * 15 14 13 25 25 C 1.46903 * 111.00103 * 45.70091 * 12 11 10 26 26 N 1.34488 * 125.41580 * 179.97438 * 2 1 3 27 27 C 1.46498 * 126.47562 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.47138 * 270.02402 * 1 2 3 29 29 H 1.09003 * 109.47262 * 30.02236 * 1 2 3 30 30 H 1.08999 * 109.47102 * 150.02486 * 1 2 3 31 31 H 1.08006 * 126.10185 * 180.27063 * 4 3 2 32 32 H 1.09001 * 109.47714 * 274.14284 * 9 8 6 33 33 H 1.09004 * 109.47214 * 34.14236 * 9 8 6 34 34 H 1.08999 * 109.47156 * 154.13920 * 9 8 6 35 35 H 1.09008 * 109.47044 * 330.00236 * 10 8 6 36 36 H 1.08998 * 109.47087 * 210.00055 * 10 8 6 37 37 H 1.09008 * 109.46462 * 60.00335 * 11 10 8 38 38 H 1.08998 * 109.47423 * 300.00305 * 11 10 8 39 39 H 1.09000 * 109.49410 * 52.79004 * 13 12 11 40 40 H 1.08996 * 109.48944 * 292.70250 * 13 12 11 41 41 H 1.09001 * 109.62740 * 173.53654 * 14 13 12 42 42 H 1.09005 * 109.63011 * 293.92070 * 14 13 12 43 43 H 0.97003 * 119.99623 * 179.97438 * 19 18 16 44 44 H 1.08989 * 109.63038 * 170.89362 * 24 15 14 45 45 H 1.08999 * 109.62602 * 291.47928 * 24 15 14 46 46 H 1.09002 * 109.49023 * 67.29239 * 25 12 11 47 47 H 1.08997 * 109.51323 * 307.22962 * 25 12 11 48 48 H 1.08999 * 109.47469 * 274.74532 * 27 26 2 49 49 H 1.08997 * 109.47094 * 34.74700 * 27 26 2 50 50 H 1.09002 * 109.47500 * 154.74001 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0056 5 6 3.5975 -0.6608 0.0009 6 6 4.8029 -1.4983 0.0021 7 8 4.7079 -2.7014 -0.1534 8 7 6.0148 -0.9348 0.1757 9 6 6.1210 0.4927 0.4872 10 6 7.2259 -1.7497 0.0527 11 6 7.7084 -1.7305 -1.3992 12 7 8.9232 -2.5472 -1.5224 13 6 9.2819 -2.7478 -2.9327 14 6 10.6440 -3.4449 -3.0156 15 7 10.5909 -4.6721 -2.2068 16 6 10.9793 -5.8764 -2.7304 17 1 10.5518 -6.7930 -2.3516 18 6 11.9224 -5.9190 -3.7480 19 7 12.5492 -4.8199 -4.1108 20 14 12.3022 -7.5361 -4.6024 21 1 11.4683 -8.6147 -4.0138 22 1 12.0011 -7.4130 -6.0513 23 1 13.7388 -7.8659 -4.4217 24 6 10.1090 -4.5718 -0.8208 25 6 8.7679 -3.8304 -0.8242 26 7 2.2864 -1.0960 0.0005 27 6 1.8311 -2.4885 0.0006 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 4.3978 1.3722 0.0111 32 1 6.1166 1.0681 -0.4385 33 1 5.2754 0.7935 1.1059 34 1 7.0499 0.6788 1.0263 35 1 7.0053 -2.7754 0.3486 36 1 8.0039 -1.3443 0.6995 37 1 7.9290 -0.7048 -1.6951 38 1 6.9304 -2.1359 -2.0460 39 1 9.3363 -1.7820 -3.4351 40 1 8.5262 -3.3674 -3.4155 41 1 10.8626 -3.6992 -4.0528 42 1 11.4187 -2.7820 -2.6301 43 1 13.2085 -4.8497 -4.8217 44 1 9.9739 -5.5710 -0.4069 45 1 10.8317 -4.0185 -0.2211 46 1 8.0194 -4.4349 -1.3365 47 1 8.4493 -3.6501 0.2024 48 1 1.6369 -2.8072 1.0247 49 1 0.9158 -2.5714 -0.5854 50 1 2.6016 -3.1228 -0.4375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267574636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:32 Heat of formation + Delta-G solvation = 64.994846 kcal Electronic energy + Delta-G solvation = -29472.292304 eV Core-core repulsion = 25536.782804 eV Total energy + Delta-G solvation = -3935.509500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.40558 -40.83781 -39.66046 -37.28366 -36.17265 -34.99636 -33.54438 -32.92918 -31.88741 -30.63425 -28.86253 -28.52487 -27.58585 -27.17029 -25.31659 -24.24312 -23.56062 -22.69691 -21.27077 -20.79786 -20.40844 -18.81316 -18.20907 -17.76827 -17.44065 -17.15854 -16.92167 -16.31911 -15.93343 -15.85308 -15.53980 -15.30094 -15.19846 -15.09291 -14.94732 -14.56065 -14.29529 -14.22848 -14.03831 -13.89082 -13.81176 -13.40218 -13.19356 -13.17388 -13.12353 -12.93624 -12.66992 -12.50961 -12.32390 -12.10581 -11.99427 -11.91366 -11.55610 -11.50169 -11.45008 -10.99085 -10.78411 -10.61892 -9.86157 -9.51626 -9.36485 -8.67406 -7.86236 -5.36625 0.18880 1.33638 1.44938 1.45423 1.56456 1.69729 2.07142 2.17149 2.48576 3.00431 3.28786 3.35755 3.44922 3.66446 3.82877 3.88568 3.90615 4.01510 4.18789 4.23960 4.26817 4.29909 4.31077 4.43708 4.50108 4.53930 4.57783 4.63859 4.66096 4.68057 4.71774 4.77036 4.84052 4.88649 4.91268 5.01396 5.02370 5.12254 5.18741 5.34483 5.40549 5.45474 5.57775 5.73950 6.01308 6.09284 6.15887 6.19277 6.39271 6.79944 6.97497 7.13360 7.82510 8.35825 9.18481 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023949 B = 0.002190 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.864823 B =12780.411467 C =13301.477463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.229 3.771 3 N -0.525 5.525 4 C 0.031 3.969 5 C -0.117 4.117 6 C 0.586 3.414 7 O -0.583 6.583 8 N -0.596 5.596 9 C 0.051 3.949 10 C 0.122 3.878 11 C 0.050 3.950 12 N -0.528 5.528 13 C 0.050 3.950 14 C 0.182 3.818 15 N -0.618 5.618 16 C -0.260 4.260 17 H 0.066 0.934 18 C -0.055 4.055 19 N -0.937 5.937 20 Si 0.973 3.027 21 H -0.269 1.269 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.145 3.855 25 C 0.050 3.950 26 N -0.432 5.432 27 C 0.060 3.940 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.220 0.780 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.007 0.993 39 H 0.082 0.918 40 H 0.007 0.993 41 H 0.070 0.930 42 H 0.003 0.997 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.026 0.974 46 H 0.008 0.992 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.118 0.882 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.941 13.733 11.614 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.033 4.033 3 N -0.245 5.245 4 C -0.123 4.123 5 C -0.233 4.233 6 C 0.376 3.624 7 O -0.465 6.465 8 N -0.327 5.327 9 C -0.090 4.090 10 C 0.000 4.000 11 C -0.079 4.079 12 N -0.253 5.253 13 C -0.079 4.079 14 C 0.056 3.944 15 N -0.342 5.342 16 C -0.390 4.390 17 H 0.083 0.917 18 C -0.249 4.249 19 N -0.584 5.584 20 Si 0.801 3.199 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.216 1.216 24 C 0.019 3.981 25 C -0.079 4.079 26 N -0.113 5.113 27 C -0.081 4.081 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.236 0.764 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.025 0.975 39 H 0.101 0.899 40 H 0.026 0.974 41 H 0.088 0.912 42 H 0.022 0.978 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.044 0.956 46 H 0.026 0.974 47 H 0.117 0.883 48 H 0.111 0.889 49 H 0.136 0.864 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.825 13.956 11.661 29.973 hybrid contribution 0.376 -2.246 -1.221 2.584 sum -23.449 11.711 10.439 28.213 Atomic orbital electron populations 1.20509 0.81364 1.05723 1.05354 1.24324 0.97579 0.80630 1.00765 1.70222 1.02777 1.29011 1.22495 1.24047 0.96130 0.91559 1.00610 1.20675 0.85483 0.95387 1.21741 1.17121 0.83018 0.86042 0.76218 1.90768 1.86922 1.16147 1.52695 1.47488 1.04259 1.11976 1.68974 1.22771 1.05624 0.78082 1.02474 1.21637 0.85715 0.96487 0.96197 1.22439 0.89776 0.98766 0.96926 1.62050 1.33160 1.16607 1.13525 1.22633 0.97878 0.99343 0.88051 1.20767 0.91153 0.85547 0.96926 1.44404 1.76114 1.04943 1.08747 1.19590 1.16561 0.86042 1.16853 0.91661 1.25883 0.96724 1.00385 1.01951 1.70109 1.28332 1.27792 1.32181 0.85107 0.77415 0.79524 0.77808 1.19342 1.21627 1.21551 1.21141 0.93192 0.97736 0.86004 1.22590 0.96997 0.89476 0.98883 1.45318 1.04886 1.09344 1.51755 1.22452 1.02947 0.77567 1.05173 0.88019 0.88127 0.88488 0.76408 0.90182 0.88752 0.87940 0.91000 0.86683 0.89021 0.97511 0.89948 0.97425 0.91193 0.97845 0.93988 0.92337 0.95581 0.97353 0.88311 0.88938 0.86405 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.18 71.24 0.73 0.18 16 2 C 0.23 4.01 7.88 138.20 1.09 5.10 16 3 N -0.53 -11.10 11.20 -187.39 -2.10 -13.19 16 4 C 0.03 0.59 9.77 84.10 0.82 1.41 16 5 C -0.12 -2.67 6.73 40.01 0.27 -2.40 16 6 C 0.59 15.40 7.63 86.47 0.66 16.06 16 7 O -0.58 -19.51 14.33 -4.28 -0.06 -19.57 16 8 N -0.60 -12.42 2.87 -851.41 -2.45 -14.87 16 9 C 0.05 0.59 8.73 127.77 1.12 1.71 16 10 C 0.12 2.89 4.74 86.38 0.41 3.30 16 11 C 0.05 1.43 5.59 86.30 0.48 1.91 16 12 N -0.53 -18.90 4.78 -895.25 -4.28 -23.17 16 13 C 0.05 2.08 5.58 86.38 0.48 2.57 16 14 C 0.18 9.31 5.40 86.35 0.47 9.77 16 15 N -0.62 -32.87 3.05 -698.15 -2.13 -35.00 16 16 C -0.26 -14.91 9.67 84.03 0.81 -14.10 16 17 H 0.07 3.66 7.84 -2.91 -0.02 3.63 16 18 C -0.05 -3.15 5.16 84.86 0.44 -2.71 16 19 N -0.94 -56.29 10.65 21.65 0.23 -56.06 16 20 Si 0.97 46.04 29.56 68.60 2.03 48.07 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 C 0.14 6.35 6.69 86.35 0.58 6.93 16 25 C 0.05 1.85 5.04 86.38 0.44 2.28 16 26 N -0.43 -8.58 3.17 -524.95 -1.67 -10.24 16 27 C 0.06 0.90 10.62 127.77 1.36 2.25 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.10 0.35 7.13 -2.39 -0.02 0.33 16 31 H 0.22 2.79 4.49 -2.91 -0.01 2.78 16 32 H 0.08 0.73 7.44 -2.39 -0.02 0.71 16 33 H 0.09 0.95 5.22 -2.38 -0.01 0.94 16 34 H 0.10 0.79 7.84 -2.39 -0.02 0.77 16 35 H 0.07 2.03 5.39 -2.38 -0.01 2.02 16 36 H 0.12 2.20 7.86 -2.39 -0.02 2.18 16 37 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.01 0.22 8.08 -2.39 -0.02 0.20 16 39 H 0.08 3.00 8.11 -2.39 -0.02 2.98 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.07 4.01 5.85 -2.39 -0.01 4.00 16 42 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.06 2.47 7.95 -2.39 -0.02 2.45 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 47 H 0.10 3.02 5.73 -2.39 -0.01 3.01 16 48 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.12 0.94 7.17 -2.39 -0.02 0.92 16 50 H 0.08 1.78 6.12 -2.39 -0.01 1.76 16 Total: -1.00 -78.78 386.03 0.67 -78.11 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.94 Total: 11.64 kcal Atomic # 6 Polarization: 24.13 SS G_CDS: 10.14 Total: 34.27 kcal Atomic # 7 Polarization: -140.15 SS G_CDS: -12.39 Total: -152.54 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.06 Total: -19.57 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -78.78 0.67 -78.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267574636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.109 kcal (2) G-P(sol) polarization free energy of solvation -78.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds