Wall clock time and date at job start Tue Mar 31 2020 19:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50690 * 109.47515 * 2 1 4 4 C 1.35373 * 126.38710 * 85.00255 * 3 2 1 5 5 C 1.41501 * 105.50517 * 179.97438 * 4 3 2 6 6 C 1.47709 * 126.52044 * 179.97438 * 5 4 3 7 7 O 1.21576 * 119.99383 * 353.80450 * 6 5 4 8 8 N 1.34771 * 120.00395 * 173.80427 * 6 5 4 9 9 C 1.46503 * 119.99814 * 3.60525 * 8 6 5 10 10 C 1.46499 * 120.00373 * 183.60537 * 8 6 5 11 11 C 1.52993 * 109.47143 * 89.99621 * 10 8 6 12 12 N 1.46904 * 109.47345 * 180.02562 * 11 10 8 13 13 C 1.46900 * 110.99887 * 294.30618 * 12 11 10 14 14 C 1.53239 * 109.33492 * 172.74333 * 13 12 11 15 15 N 1.47078 * 108.52460 * 53.82995 * 14 13 12 16 16 C 1.36937 * 120.87871 * 128.83179 * 15 14 13 17 17 H 1.08003 * 119.99727 * 210.44174 * 16 15 14 18 18 C 1.38810 * 120.00636 * 30.44506 * 16 15 14 19 19 N 1.31627 * 119.99476 * 10.07036 * 18 16 15 20 20 Si 1.86796 * 120.00671 * 190.06772 * 18 16 15 21 21 H 1.48504 * 109.46971 * 59.99884 * 20 18 16 22 22 H 1.48498 * 109.47516 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46980 * 300.00417 * 20 18 16 24 24 C 1.47075 * 118.23701 * 308.81648 * 15 14 13 25 25 C 1.46898 * 111.00115 * 169.99861 * 12 11 10 26 26 N 1.31808 * 106.96290 * 359.97438 * 5 4 3 27 27 N 1.28466 * 110.07477 * 359.75835 * 26 5 4 28 28 H 0.96998 * 124.88479 * 180.23831 * 27 26 5 29 29 H 1.09004 * 109.47142 * 59.99515 * 1 2 3 30 30 H 1.08997 * 109.47183 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46647 * 299.99993 * 1 2 3 32 32 H 1.09004 * 109.47142 * 120.00485 * 2 1 3 33 33 H 1.09008 * 109.46773 * 240.00036 * 2 1 3 34 34 H 1.07992 * 127.24531 * 359.94169 * 4 3 2 35 35 H 1.08995 * 109.47220 * 84.24913 * 9 8 6 36 36 H 1.08997 * 109.46903 * 204.25008 * 9 8 6 37 37 H 1.09004 * 109.47218 * 324.24681 * 9 8 6 38 38 H 1.08995 * 109.47423 * 210.00245 * 10 8 6 39 39 H 1.09003 * 109.46526 * 330.00081 * 10 8 6 40 40 H 1.09004 * 109.47701 * 300.00527 * 11 10 8 41 41 H 1.09001 * 109.47465 * 60.00470 * 11 10 8 42 42 H 1.08995 * 109.49134 * 292.70044 * 13 12 11 43 43 H 1.09003 * 109.49254 * 52.78280 * 13 12 11 44 44 H 1.09004 * 109.63159 * 294.11359 * 14 13 12 45 45 H 1.09002 * 109.62624 * 173.53800 * 14 13 12 46 46 H 0.96996 * 119.99685 * 180.02562 * 19 18 16 47 47 H 1.09001 * 109.62328 * 291.46868 * 24 15 14 48 48 H 1.09003 * 109.78828 * 170.99031 * 24 15 14 49 49 H 1.08994 * 109.49897 * 307.21729 * 25 12 11 50 50 H 1.09002 * 109.48909 * 67.29989 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2107 2.2095 1.0856 5 6 2.6934 3.4410 0.5832 6 6 3.0427 4.6375 1.3760 7 8 2.8186 4.6617 2.5706 8 7 3.6098 5.7022 0.7750 9 6 3.8075 5.7046 -0.6766 10 6 4.0284 6.8571 1.5732 11 6 5.4766 6.6649 2.0276 12 7 5.8963 7.8227 2.8285 13 6 5.9380 9.0418 2.0099 14 6 6.2012 10.2510 2.9137 15 7 7.4149 9.9896 3.7023 16 6 8.4343 10.9028 3.7469 17 1 9.4533 10.5687 3.8757 18 6 8.1582 12.2578 3.6267 19 7 6.9128 12.6819 3.6693 20 14 9.5537 13.4795 3.4048 21 1 10.3032 13.1548 2.1646 22 1 8.9980 14.8528 3.3027 23 1 10.4695 13.4020 4.5712 24 6 7.5044 8.7215 4.4419 25 6 7.1898 7.5724 3.4782 26 7 2.7722 3.3176 -0.7267 27 7 2.3950 2.1422 -1.0823 28 1 2.3712 1.8203 -1.9970 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 2.0233 1.9529 2.1178 35 1 2.8913 6.0325 -1.1676 36 1 4.6199 6.3852 -0.9315 37 1 4.0586 4.6979 -1.0109 38 1 3.9538 7.7619 0.9701 39 1 3.3826 6.9483 2.4466 40 1 5.5513 5.7601 2.6307 41 1 6.1224 6.5737 1.1543 42 1 6.7366 8.9578 1.2729 43 1 4.9834 9.1700 1.4995 44 1 5.3541 10.3989 3.5835 45 1 6.3471 11.1409 2.3013 46 1 6.7198 13.6287 3.5849 47 1 6.7826 8.7224 5.2587 48 1 8.5105 8.5983 4.8427 49 1 7.1432 6.6352 4.0325 50 1 7.9710 7.5090 2.7206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267606307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:35 Heat of formation + Delta-G solvation = 81.686888 kcal Electronic energy + Delta-G solvation = -28888.302778 eV Core-core repulsion = 24953.517099 eV Total energy + Delta-G solvation = -3934.785679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.04798 -39.66435 -38.00768 -35.80002 -34.81855 -34.20566 -32.29575 -31.42457 -29.93649 -29.84787 -29.00585 -26.82624 -26.07846 -24.25641 -24.08129 -22.91949 -22.37850 -21.41683 -21.13098 -19.08389 -18.96592 -18.15772 -16.89503 -16.76680 -16.21706 -16.10919 -15.21575 -14.97727 -14.85488 -14.56113 -14.32677 -14.24615 -13.83024 -13.64524 -13.47433 -13.38452 -13.31844 -13.00502 -12.97434 -12.80333 -12.62351 -12.17284 -12.11644 -11.76803 -11.66820 -11.36114 -10.95364 -10.87261 -10.81640 -10.70730 -10.39546 -10.22411 -10.10862 -9.96595 -9.71036 -9.69141 -9.56484 -9.31795 -8.67114 -8.45413 -7.73094 -6.53775 -5.71964 -3.18605 1.31604 1.78140 2.44482 2.94043 3.28745 3.41321 3.46321 3.47385 4.02768 4.18284 4.37171 4.51655 4.57933 4.70463 4.80939 4.99309 5.10845 5.18044 5.23320 5.30295 5.34645 5.35323 5.46826 5.51288 5.55131 5.59940 5.66065 5.69270 5.78027 5.90130 5.99050 6.05752 6.11074 6.19988 6.23886 6.30482 6.40802 6.50905 6.62190 6.65016 6.78872 7.03496 7.27973 7.34593 7.53179 7.68986 7.74251 7.78693 7.88457 8.12579 8.52550 9.28562 9.90058 10.50940 11.36447 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.036268 B = 0.001901 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.852069 B =14728.565385 C =14962.873912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C 0.017 3.983 4 C -0.175 4.175 5 C -0.003 4.003 6 C 0.597 3.403 7 O -0.526 6.526 8 N -0.602 5.602 9 C 0.075 3.925 10 C 0.118 3.882 11 C 0.045 3.955 12 N -0.529 5.529 13 C 0.031 3.969 14 C 0.179 3.821 15 N -0.595 5.595 16 C -0.251 4.251 17 H 0.063 0.937 18 C 0.003 3.997 19 N -0.906 5.906 20 Si 0.905 3.095 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.149 3.851 25 C 0.047 3.953 26 N -0.256 5.256 27 N -0.385 5.385 28 H 0.443 0.557 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.162 0.838 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.025 0.975 42 H 0.023 0.977 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.089 0.911 46 H 0.254 0.746 47 H 0.026 0.974 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.966 -25.809 -13.159 31.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.109 4.109 4 C -0.203 4.203 5 C -0.164 4.164 6 C 0.383 3.617 7 O -0.400 6.400 8 N -0.335 5.335 9 C -0.069 4.069 10 C -0.004 4.004 11 C -0.085 4.085 12 N -0.255 5.255 13 C -0.098 4.098 14 C 0.053 3.947 15 N -0.319 5.319 16 C -0.381 4.381 17 H 0.081 0.919 18 C -0.196 4.196 19 N -0.550 5.550 20 Si 0.735 3.265 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.022 3.978 25 C -0.082 4.082 26 N -0.093 5.093 27 N -0.099 5.099 28 H 0.287 0.713 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.180 0.820 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.073 0.927 49 H 0.079 0.921 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.172 -24.888 -13.054 30.626 hybrid contribution 1.114 -0.024 -0.771 1.355 sum -11.058 -24.911 -13.825 30.561 Atomic orbital electron populations 1.21787 0.93917 1.02333 1.02739 1.20131 0.96525 0.88647 1.04049 1.21456 1.05197 0.96920 0.87347 1.21513 1.06564 0.92294 0.99886 1.21977 1.07673 0.96904 0.89828 1.16995 0.77615 0.81056 0.86068 1.90826 1.54075 1.81004 1.14084 1.47696 1.59869 1.17300 1.08605 1.22125 1.01376 1.04292 0.79083 1.21575 0.96053 0.86334 0.96472 1.22365 0.94995 0.94997 0.96143 1.61873 1.29917 1.02234 1.31441 1.22997 0.98687 0.92200 0.95875 1.20873 0.88291 0.93039 0.92496 1.44058 1.18353 1.16724 1.52754 1.19140 0.87195 0.86344 1.45445 0.91929 1.25156 0.96193 0.97196 1.01026 1.69965 1.17030 1.14069 1.53962 0.86334 0.81585 0.80438 0.78133 1.21132 1.21605 1.20902 1.20984 0.98445 0.85833 0.92528 1.22598 0.88646 0.99409 0.97580 1.73749 1.18388 1.02077 1.15042 1.43465 1.47577 1.08931 1.09877 0.71318 0.92703 0.91677 0.91762 0.88941 0.90644 0.82021 0.92597 0.91344 0.88881 0.90049 0.88597 0.91183 0.95663 0.95835 0.92085 0.95488 0.89331 0.93573 0.95560 0.92678 0.92060 0.95606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.90 37.16 0.37 -0.16 16 2 C -0.05 -0.20 6.49 -27.89 -0.18 -0.38 16 3 C 0.02 0.11 6.48 -82.21 -0.53 -0.42 16 4 C -0.17 -1.76 10.73 -39.36 -0.42 -2.18 16 5 C 0.00 -0.04 6.82 -82.77 -0.56 -0.60 16 6 C 0.60 8.78 7.68 -12.39 -0.10 8.69 16 7 O -0.53 -9.41 16.49 5.30 0.09 -9.32 16 8 N -0.60 -8.04 2.87 -182.75 -0.53 -8.57 16 9 C 0.07 0.77 9.64 59.85 0.58 1.35 16 10 C 0.12 1.74 5.34 -4.05 -0.02 1.72 16 11 C 0.04 0.72 5.28 -3.83 -0.02 0.70 16 12 N -0.53 -10.09 4.63 -234.33 -1.08 -11.18 16 13 C 0.03 0.63 5.46 -3.70 -0.02 0.61 16 14 C 0.18 4.45 5.36 -3.60 -0.02 4.43 16 15 N -0.60 -15.60 3.03 -172.02 -0.52 -16.12 16 16 C -0.25 -7.08 9.63 -15.06 -0.15 -7.23 16 17 H 0.06 1.73 7.85 -52.48 -0.41 1.31 16 18 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16 19 N -0.91 -26.70 11.02 55.49 0.61 -26.09 16 20 Si 0.91 22.02 29.57 -169.99 -5.03 16.99 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.15 3.34 6.69 -3.61 -0.02 3.31 16 25 C 0.05 0.91 5.62 -3.70 -0.02 0.89 16 26 N -0.26 -2.50 8.75 33.42 0.29 -2.21 16 27 N -0.38 -2.53 6.83 33.50 0.23 -2.30 16 28 H 0.44 1.26 8.96 -190.44 -1.71 -0.45 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.14 8.14 -51.92 -0.42 -0.28 16 34 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 37 H 0.09 0.93 5.33 -51.93 -0.28 0.65 16 38 H 0.08 1.12 6.33 -51.93 -0.33 0.79 16 39 H 0.10 1.60 7.37 -51.93 -0.38 1.22 16 40 H 0.07 1.17 7.97 -51.93 -0.41 0.76 16 41 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 1.09 6.16 -51.93 -0.32 0.77 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 2.41 6.19 -51.93 -0.32 2.09 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.05 1.18 7.96 -51.93 -0.41 0.77 16 49 H 0.06 1.06 7.99 -51.93 -0.41 0.64 16 50 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -34.32 396.75 -10.78 -45.10 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -9.62 Total: -3.00 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -1.21 Total: 10.71 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -1.00 Total: -66.46 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.32 -10.78 -45.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267606307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.790 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds