Wall clock time and date at job start Tue Mar 31 2020 19:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50690 * 109.47515 * 2 1 4 4 C 1.35373 * 126.38710 * 85.00255 * 3 2 1 5 5 C 1.41501 * 105.50517 * 179.97438 * 4 3 2 6 6 C 1.47709 * 126.52044 * 179.97438 * 5 4 3 7 7 O 1.21576 * 119.99383 * 353.80450 * 6 5 4 8 8 N 1.34771 * 120.00395 * 173.80427 * 6 5 4 9 9 C 1.46503 * 119.99814 * 3.60525 * 8 6 5 10 10 C 1.46499 * 120.00373 * 183.60537 * 8 6 5 11 11 C 1.52993 * 109.47143 * 89.99621 * 10 8 6 12 12 N 1.46904 * 109.47345 * 180.02562 * 11 10 8 13 13 C 1.46900 * 110.99887 * 294.30618 * 12 11 10 14 14 C 1.53239 * 109.33492 * 172.74333 * 13 12 11 15 15 N 1.47078 * 108.52460 * 53.82995 * 14 13 12 16 16 C 1.36937 * 120.87871 * 128.83179 * 15 14 13 17 17 H 1.08003 * 119.99727 * 210.44174 * 16 15 14 18 18 C 1.38810 * 120.00636 * 30.44506 * 16 15 14 19 19 N 1.31627 * 119.99476 * 10.07036 * 18 16 15 20 20 Si 1.86796 * 120.00671 * 190.06772 * 18 16 15 21 21 H 1.48504 * 109.46971 * 59.99884 * 20 18 16 22 22 H 1.48498 * 109.47516 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46980 * 300.00417 * 20 18 16 24 24 C 1.47075 * 118.23701 * 308.81648 * 15 14 13 25 25 C 1.46898 * 111.00115 * 169.99861 * 12 11 10 26 26 N 1.31808 * 106.96290 * 359.97438 * 5 4 3 27 27 N 1.28466 * 110.07477 * 359.75835 * 26 5 4 28 28 H 0.96998 * 124.88479 * 180.23831 * 27 26 5 29 29 H 1.09004 * 109.47142 * 59.99515 * 1 2 3 30 30 H 1.08997 * 109.47183 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46647 * 299.99993 * 1 2 3 32 32 H 1.09004 * 109.47142 * 120.00485 * 2 1 3 33 33 H 1.09008 * 109.46773 * 240.00036 * 2 1 3 34 34 H 1.07992 * 127.24531 * 359.94169 * 4 3 2 35 35 H 1.08995 * 109.47220 * 84.24913 * 9 8 6 36 36 H 1.08997 * 109.46903 * 204.25008 * 9 8 6 37 37 H 1.09004 * 109.47218 * 324.24681 * 9 8 6 38 38 H 1.08995 * 109.47423 * 210.00245 * 10 8 6 39 39 H 1.09003 * 109.46526 * 330.00081 * 10 8 6 40 40 H 1.09004 * 109.47701 * 300.00527 * 11 10 8 41 41 H 1.09001 * 109.47465 * 60.00470 * 11 10 8 42 42 H 1.08995 * 109.49134 * 292.70044 * 13 12 11 43 43 H 1.09003 * 109.49254 * 52.78280 * 13 12 11 44 44 H 1.09004 * 109.63159 * 294.11359 * 14 13 12 45 45 H 1.09002 * 109.62624 * 173.53800 * 14 13 12 46 46 H 0.96996 * 119.99685 * 180.02562 * 19 18 16 47 47 H 1.09001 * 109.62328 * 291.46868 * 24 15 14 48 48 H 1.09003 * 109.78828 * 170.99031 * 24 15 14 49 49 H 1.08994 * 109.49897 * 307.21729 * 25 12 11 50 50 H 1.09002 * 109.48909 * 67.29989 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2107 2.2095 1.0856 5 6 2.6934 3.4410 0.5832 6 6 3.0427 4.6375 1.3760 7 8 2.8186 4.6617 2.5706 8 7 3.6098 5.7022 0.7750 9 6 3.8075 5.7046 -0.6766 10 6 4.0284 6.8571 1.5732 11 6 5.4766 6.6649 2.0276 12 7 5.8963 7.8227 2.8285 13 6 5.9380 9.0418 2.0099 14 6 6.2012 10.2510 2.9137 15 7 7.4149 9.9896 3.7023 16 6 8.4343 10.9028 3.7469 17 1 9.4533 10.5687 3.8757 18 6 8.1582 12.2578 3.6267 19 7 6.9128 12.6819 3.6693 20 14 9.5537 13.4795 3.4048 21 1 10.3032 13.1548 2.1646 22 1 8.9980 14.8528 3.3027 23 1 10.4695 13.4020 4.5712 24 6 7.5044 8.7215 4.4419 25 6 7.1898 7.5724 3.4782 26 7 2.7722 3.3176 -0.7267 27 7 2.3950 2.1422 -1.0823 28 1 2.3712 1.8203 -1.9970 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 2.0233 1.9529 2.1178 35 1 2.8913 6.0325 -1.1676 36 1 4.6199 6.3852 -0.9315 37 1 4.0586 4.6979 -1.0109 38 1 3.9538 7.7619 0.9701 39 1 3.3826 6.9483 2.4466 40 1 5.5513 5.7601 2.6307 41 1 6.1224 6.5737 1.1543 42 1 6.7366 8.9578 1.2729 43 1 4.9834 9.1700 1.4995 44 1 5.3541 10.3989 3.5835 45 1 6.3471 11.1409 2.3013 46 1 6.7198 13.6287 3.5849 47 1 6.7826 8.7224 5.2587 48 1 8.5105 8.5983 4.8427 49 1 7.1432 6.6352 4.0325 50 1 7.9710 7.5090 2.7206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267606307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:34 Heat of formation + Delta-G solvation = 58.111422 kcal Electronic energy + Delta-G solvation = -28889.325087 eV Core-core repulsion = 24953.517099 eV Total energy + Delta-G solvation = -3935.807988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.73987 -40.79854 -39.63068 -37.09589 -35.98991 -35.16348 -33.52193 -32.88149 -31.64958 -30.89107 -30.07089 -28.07213 -27.49442 -25.53754 -24.66457 -24.42790 -24.08187 -22.46768 -22.03652 -20.84170 -20.00730 -18.84058 -18.71879 -17.73742 -17.44494 -17.04207 -16.81839 -16.24137 -16.01049 -15.83558 -15.32261 -15.30500 -15.20912 -14.98210 -14.87580 -14.86230 -14.50539 -14.16441 -14.00127 -13.89074 -13.40899 -13.25713 -13.23194 -13.04969 -12.87122 -12.63408 -12.47474 -12.43157 -12.16423 -12.00686 -11.97120 -11.85005 -11.61488 -11.54902 -11.39721 -11.20423 -10.58595 -10.45046 -9.96989 -9.76340 -9.27057 -8.62099 -7.85777 -5.36858 0.46988 1.09345 1.47363 1.49576 1.56654 1.71450 2.10445 2.28771 2.51099 3.03628 3.27355 3.30938 3.67671 3.68614 3.82520 3.97363 4.07286 4.24545 4.27805 4.33651 4.37572 4.42988 4.43945 4.52546 4.54940 4.60904 4.67878 4.69509 4.72502 4.80620 4.82049 4.88587 4.95877 5.01281 5.04875 5.09272 5.19903 5.21039 5.28739 5.37620 5.40797 5.48625 5.61456 5.71495 6.08082 6.16250 6.21841 6.30329 6.40733 6.80660 7.07471 7.15273 7.83505 8.40263 9.20568 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.036268 B = 0.001901 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.852069 B =14728.565385 C =14962.873912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C 0.039 3.961 4 C -0.202 4.202 5 C -0.033 4.033 6 C 0.591 3.409 7 O -0.571 6.571 8 N -0.600 5.600 9 C 0.075 3.925 10 C 0.125 3.875 11 C 0.057 3.943 12 N -0.542 5.542 13 C 0.049 3.951 14 C 0.186 3.814 15 N -0.614 5.614 16 C -0.267 4.267 17 H 0.066 0.934 18 C -0.050 4.050 19 N -0.937 5.937 20 Si 0.974 3.026 21 H -0.276 1.276 22 H -0.292 1.292 23 H -0.276 1.276 24 C 0.145 3.855 25 C 0.058 3.942 26 N -0.256 5.256 27 N -0.365 5.365 28 H 0.461 0.539 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.156 0.844 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.023 0.977 43 H 0.085 0.915 44 H -0.003 1.003 45 H 0.061 0.939 46 H 0.251 0.749 47 H 0.013 0.987 48 H 0.062 0.938 49 H 0.085 0.915 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.592 -28.128 -15.564 34.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.087 4.087 4 C -0.230 4.230 5 C -0.192 4.192 6 C 0.379 3.621 7 O -0.449 6.449 8 N -0.332 5.332 9 C -0.067 4.067 10 C 0.002 3.998 11 C -0.072 4.072 12 N -0.268 5.268 13 C -0.080 4.080 14 C 0.060 3.940 15 N -0.338 5.338 16 C -0.397 4.397 17 H 0.084 0.916 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.801 3.199 21 H -0.202 1.202 22 H -0.219 1.219 23 H -0.202 1.202 24 C 0.019 3.981 25 C -0.071 4.071 26 N -0.094 5.094 27 N -0.082 5.082 28 H 0.310 0.690 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.174 0.826 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.041 0.959 43 H 0.103 0.897 44 H 0.015 0.985 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.031 0.969 48 H 0.080 0.920 49 H 0.104 0.896 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -11.790 -27.243 -15.508 33.492 hybrid contribution 0.940 0.589 -0.039 1.110 sum -10.849 -26.654 -15.547 32.709 Atomic orbital electron populations 1.21782 0.93744 1.03180 1.02008 1.20291 0.96469 0.86481 1.05811 1.21817 1.02931 0.97780 0.86200 1.21649 1.08025 0.92514 1.00816 1.21692 1.10134 0.96660 0.90723 1.17418 0.76998 0.81874 0.85841 1.90786 1.56047 1.81967 1.16051 1.47765 1.59227 1.16494 1.09706 1.22278 1.02311 1.05083 0.77059 1.21385 0.94732 0.87513 0.96207 1.22271 0.95796 0.93214 0.95967 1.61794 1.29860 1.02938 1.32174 1.22679 0.99871 0.90756 0.94648 1.20639 0.86954 0.94318 0.92091 1.44340 1.18182 1.17610 1.53693 1.19489 0.87929 0.87144 1.45146 0.91641 1.25955 0.98550 0.98924 1.01090 1.70147 1.19003 1.14058 1.55037 0.85256 0.78630 0.77654 0.78333 1.20233 1.21851 1.20183 1.21104 0.98578 0.85565 0.92825 1.22435 0.88799 0.98824 0.97090 1.73644 1.18497 1.03393 1.13818 1.43563 1.45716 1.07937 1.10939 0.69013 0.92650 0.90071 0.93321 0.88242 0.87838 0.82582 0.91637 0.90189 0.88272 0.88774 0.90960 0.91726 0.94342 0.95908 0.89652 0.98493 0.92110 0.93993 0.96878 0.91958 0.89642 0.95524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.90 71.98 0.71 0.01 16 2 C -0.05 -0.22 6.49 29.85 0.19 -0.03 16 3 C 0.04 0.46 6.48 41.40 0.27 0.73 16 4 C -0.20 -3.98 10.73 22.41 0.24 -3.74 16 5 C -0.03 -0.79 6.82 42.46 0.29 -0.50 16 6 C 0.59 17.62 7.68 86.75 0.67 18.29 16 7 O -0.57 -21.31 16.49 -3.95 -0.07 -21.37 16 8 N -0.60 -15.64 2.87 -850.37 -2.44 -18.08 16 9 C 0.07 1.41 9.64 127.77 1.23 2.64 16 10 C 0.12 3.60 5.34 86.38 0.46 4.06 16 11 C 0.06 1.75 5.28 86.30 0.46 2.20 16 12 N -0.54 -20.30 4.63 -895.27 -4.14 -24.44 16 13 C 0.05 1.97 5.46 86.38 0.47 2.44 16 14 C 0.19 9.49 5.36 86.35 0.46 9.95 16 15 N -0.61 -32.71 3.03 -698.14 -2.11 -34.82 16 16 C -0.27 -15.19 9.63 84.03 0.81 -14.38 16 17 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 18 C -0.05 -2.85 5.08 84.86 0.43 -2.42 16 19 N -0.94 -56.65 11.02 21.65 0.24 -56.41 16 20 Si 0.97 45.61 29.57 68.60 2.03 47.64 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 C 0.15 6.54 6.69 86.35 0.58 7.12 16 25 C 0.06 2.17 5.62 86.38 0.49 2.66 16 26 N -0.26 -4.54 8.75 -48.18 -0.42 -4.96 16 27 N -0.36 -3.83 6.83 -47.93 -0.33 -4.15 16 28 H 0.46 1.00 8.96 -220.00 -1.97 -0.97 16 29 H 0.05 0.26 8.14 -2.39 -0.02 0.25 16 30 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.10 -0.07 8.14 -2.38 -0.02 -0.09 16 34 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.33 8.03 -2.39 -0.02 1.31 16 37 H 0.10 1.78 5.33 -2.39 -0.01 1.77 16 38 H 0.09 2.46 6.33 -2.39 -0.02 2.44 16 39 H 0.07 2.46 7.37 -2.39 -0.02 2.45 16 40 H 0.06 2.10 7.97 -2.38 -0.02 2.08 16 41 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 42 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 2.95 6.16 -2.39 -0.01 2.94 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.06 3.42 6.19 -2.39 -0.01 3.40 16 46 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 47 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.06 2.66 7.96 -2.39 -0.02 2.64 16 49 H 0.09 2.81 7.99 -2.39 -0.02 2.79 16 50 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -76.73 396.75 -0.53 -77.25 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -1.03 Total: 10.33 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 7.76 Total: 29.03 kcal Atomic # 7 Polarization: -133.66 SS G_CDS: -9.21 Total: -142.87 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.07 Total: -21.37 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -76.73 -0.53 -77.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267606307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.363 kcal (2) G-P(sol) polarization free energy of solvation -76.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds