Wall clock time and date at job start Tue Mar 31 2020 20:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46768 * 2 1 4 4 C 1.53002 * 109.47074 * 119.99775 * 2 1 3 5 5 H 1.09008 * 109.46793 * 300.00478 * 4 2 1 6 6 C 1.53000 * 109.46776 * 60.00090 * 4 2 1 7 7 N 1.46499 * 109.46840 * 174.99842 * 6 4 2 8 8 C 1.34779 * 119.99872 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00071 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.50701 * 109.47064 * 180.02562 * 10 8 7 12 12 N 1.30825 * 125.95970 * 90.02509 * 11 10 8 13 13 C 1.33253 * 109.82675 * 180.02562 * 12 11 10 14 14 C 1.50697 * 125.52472 * 180.02562 * 13 12 11 15 15 C 1.53004 * 117.49606 * 188.74933 * 14 13 12 16 16 C 1.53001 * 117.49746 * 120.08837 * 14 13 12 17 17 N 1.30710 * 108.94363 * 359.97438 * 13 12 11 18 18 N 1.34427 * 125.95671 * 269.71561 * 11 10 8 19 19 C 1.46501 * 126.82998 * 0.02562 * 18 11 10 20 20 N 1.46496 * 109.47348 * 180.02562 * 4 2 1 21 21 C 1.36941 * 120.00198 * 84.99697 * 20 4 2 22 22 H 1.07996 * 119.99379 * 0.02562 * 21 20 4 23 23 C 1.38810 * 119.99828 * 180.02562 * 21 20 4 24 24 N 1.31617 * 120.00148 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99611 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47258 * 90.00522 * 25 23 21 27 27 H 1.48502 * 109.47182 * 210.00165 * 25 23 21 28 28 H 1.48501 * 109.47539 * 330.00366 * 25 23 21 29 29 H 1.08994 * 109.47439 * 300.00339 * 1 2 3 30 30 H 1.09001 * 109.46964 * 60.00077 * 1 2 3 31 31 H 1.08993 * 109.46700 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47420 * 240.00218 * 2 1 3 33 33 H 1.09001 * 109.46946 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47016 * 299.99680 * 3 2 1 35 35 H 1.09003 * 109.47072 * 60.00148 * 3 2 1 36 36 H 1.09002 * 109.47398 * 295.00168 * 6 4 2 37 37 H 1.09001 * 109.47194 * 55.00349 * 6 4 2 38 38 H 0.97000 * 120.00420 * 0.02562 * 7 6 4 39 39 H 1.09002 * 109.47152 * 300.00160 * 10 8 7 40 40 H 1.09001 * 109.46980 * 60.00059 * 10 8 7 41 41 H 1.08996 * 115.55358 * 334.41377 * 14 13 12 42 42 H 1.08997 * 117.49926 * 359.97438 * 15 14 13 43 43 H 1.08997 * 117.50101 * 145.02413 * 15 14 13 44 44 H 1.09003 * 117.49652 * 214.97619 * 16 14 13 45 45 H 1.09002 * 117.49606 * 359.97438 * 16 14 13 46 46 H 1.09000 * 109.47099 * 89.99806 * 19 18 11 47 47 H 1.08991 * 109.47372 * 210.00092 * 19 18 11 48 48 H 1.09002 * 109.46790 * 330.00547 * 19 18 11 49 49 H 0.97002 * 119.99429 * 265.00252 * 20 4 2 50 50 H 0.97004 * 120.00027 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5300 -2.1637 1.2493 7 7 2.1142 -2.8882 2.3807 8 6 1.8061 -4.1847 2.5821 9 8 1.0449 -4.7515 1.8270 10 6 2.4065 -4.9298 3.7463 11 6 1.9052 -6.3510 3.7455 12 7 2.4685 -7.3640 3.1388 13 6 1.7561 -8.4701 3.3496 14 6 2.0861 -9.8395 2.8140 15 6 1.0386 -10.9400 2.9948 16 6 2.3207 -10.9582 3.8310 17 7 0.7254 -8.1750 4.0973 18 7 0.8045 -6.8001 4.3730 19 6 -0.1296 -6.0114 5.1803 20 7 3.5050 -0.7207 1.2497 21 6 4.1893 0.3543 1.7511 22 1 3.6488 1.2015 2.1466 23 6 5.5774 0.3549 1.7509 24 7 6.2359 -0.6775 1.2684 25 14 6.5107 1.8210 2.4356 26 1 6.7585 1.6169 3.8855 27 1 7.8081 1.9572 1.7260 28 1 5.7075 3.0546 2.2396 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 0.4437 -2.1650 1.3388 37 1 1.8184 -2.6511 0.3179 38 1 2.7227 -2.4348 2.9849 39 1 3.4929 -4.9280 3.6575 40 1 2.1173 -4.4427 4.6776 41 1 2.6812 -9.8564 1.9010 42 1 0.1111 -10.6736 3.5016 43 1 0.9450 -11.6811 2.2011 44 1 3.0700 -11.7113 3.5869 45 1 2.2368 -10.7036 4.8876 46 1 -0.9202 -5.6185 4.5410 47 1 -0.5672 -6.6446 5.9519 48 1 0.4038 -5.1841 5.6484 49 1 3.9903 -1.4819 0.8946 50 1 7.2059 -0.6769 1.2679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268228260.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:10 Heat of formation + Delta-G solvation = 79.120981 kcal Electronic energy + Delta-G solvation = -28969.194033 eV Core-core repulsion = 25034.297088 eV Total energy + Delta-G solvation = -3934.896945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -42.21377 -39.46845 -37.45005 -37.21341 -33.97613 -33.93958 -33.16257 -32.63261 -30.49036 -29.32136 -27.87957 -27.17903 -26.10173 -23.89542 -23.76997 -22.58813 -22.13006 -20.98810 -20.19407 -19.86097 -19.24527 -17.53271 -17.14523 -16.89138 -15.98423 -15.77571 -15.48127 -15.41288 -14.95041 -14.75881 -14.06287 -13.93530 -13.72752 -13.64187 -13.38902 -13.36149 -13.33765 -12.87941 -12.47639 -12.27108 -12.08827 -12.03468 -11.79766 -11.66750 -11.61942 -11.09518 -11.03768 -10.99909 -10.84980 -10.70310 -10.68733 -10.34373 -10.13717 -10.01920 -9.95723 -9.88355 -9.61300 -9.57159 -9.21398 -8.96522 -8.72064 -7.07752 -5.85819 -3.15641 1.50130 2.19621 2.69485 2.77029 3.35667 3.42099 3.43738 3.44328 3.73120 3.87174 4.26498 4.37179 4.49739 4.66910 4.73992 4.80956 4.90796 5.00218 5.01282 5.18003 5.29370 5.33321 5.34470 5.43084 5.47785 5.49818 5.59104 5.61473 5.70843 5.85340 5.91160 5.95632 5.96549 6.13917 6.19986 6.26828 6.33231 6.39873 6.40937 6.49036 6.58512 6.62079 6.71485 6.84479 7.02907 7.26320 7.62404 7.78739 8.12035 8.31068 8.41798 9.43248 9.97550 10.33448 11.35680 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.002518 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.867145 B =11116.004614 C =12205.626000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.115 3.885 7 N -0.707 5.707 8 C 0.517 3.483 9 O -0.543 6.543 10 C -0.069 4.069 11 C 0.309 3.691 12 N -0.525 5.525 13 C 0.255 3.745 14 C -0.069 4.069 15 C -0.161 4.161 16 C -0.159 4.159 17 N -0.319 5.319 18 N -0.374 5.374 19 C 0.096 3.904 20 N -0.721 5.721 21 C -0.239 4.239 22 H 0.073 0.927 23 C -0.010 4.010 24 N -0.927 5.927 25 Si 0.902 3.098 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.412 0.588 39 H 0.135 0.865 40 H 0.115 0.885 41 H 0.131 0.869 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.386 0.614 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.796 -11.520 7.447 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.196 4.196 4 C 0.060 3.940 5 H 0.072 0.928 6 C -0.010 4.010 7 N -0.359 5.359 8 C 0.300 3.700 9 O -0.420 6.420 10 C -0.111 4.111 11 C 0.032 3.968 12 N -0.252 5.252 13 C -0.027 4.027 14 C -0.089 4.089 15 C -0.199 4.199 16 C -0.198 4.198 17 N -0.147 5.147 18 N -0.164 5.164 19 C -0.046 4.046 20 N -0.363 5.363 21 C -0.370 4.370 22 H 0.091 0.909 23 C -0.206 4.206 24 N -0.575 5.575 25 Si 0.733 3.267 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.249 0.751 39 H 0.153 0.847 40 H 0.133 0.867 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.220 0.780 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.569 -12.176 7.090 18.881 hybrid contribution 0.996 1.270 0.488 1.686 sum -11.574 -10.906 7.578 17.615 Atomic orbital electron populations 1.21941 0.96900 1.00905 1.00938 1.21739 0.93502 0.97836 1.00098 1.21818 1.04242 0.94580 0.98987 1.20542 0.86465 0.90980 0.96022 0.92845 1.21762 0.97177 0.93241 0.88786 1.45902 1.48532 1.10378 1.31083 1.19971 0.81798 0.82305 0.85902 1.90734 1.36454 1.67630 1.47205 1.20213 1.04693 0.86360 0.99869 1.23321 0.85798 0.96053 0.91605 1.70250 1.32025 0.97610 1.25304 1.23020 0.89607 0.94714 0.95349 1.20045 1.04989 0.82641 1.01250 1.23035 0.94194 0.99740 1.02962 1.23032 1.00037 0.99598 0.97139 1.77874 1.22850 0.90801 1.23207 1.50054 1.20660 1.06440 1.39287 1.21947 0.92749 0.94840 0.95107 1.42473 0.98683 1.21288 1.73842 1.19174 0.88746 0.96456 1.32593 0.90933 1.24734 0.96499 0.97677 1.01712 1.69658 1.06976 1.29816 1.51039 0.86280 0.79645 0.82315 0.78449 1.21773 1.21869 1.20780 0.93204 0.93558 0.93104 0.91871 0.89460 0.95001 0.94082 0.91592 0.91783 0.75139 0.84671 0.86713 0.85117 0.87940 0.87921 0.87798 0.88654 0.90038 0.88986 0.89046 0.78034 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.84 37.16 0.33 -1.68 16 2 C -0.11 -1.80 2.69 -90.61 -0.24 -2.04 16 3 C -0.14 -2.42 8.26 37.16 0.31 -2.11 16 4 C 0.17 2.94 2.18 -67.93 -0.15 2.79 16 5 H 0.05 0.93 8.08 -51.92 -0.42 0.51 16 6 C 0.11 1.83 4.73 -4.04 -0.02 1.81 16 7 N -0.71 -10.59 5.39 -60.29 -0.32 -10.91 16 8 C 0.52 7.91 7.82 -10.98 -0.09 7.82 16 9 O -0.54 -10.41 16.03 5.56 0.09 -10.32 16 10 C -0.07 -0.83 6.03 -29.03 -0.17 -1.01 16 11 C 0.31 4.57 6.48 -155.70 -1.01 3.56 16 12 N -0.53 -8.87 11.19 -8.16 -0.09 -8.97 16 13 C 0.25 3.92 7.69 -156.85 -1.21 2.72 16 14 C -0.07 -0.81 6.33 -91.77 -0.58 -1.39 16 15 C -0.16 -1.51 10.14 -26.69 -0.27 -1.78 16 16 C -0.16 -1.46 10.24 -26.69 -0.27 -1.73 16 17 N -0.32 -4.80 12.24 32.42 0.40 -4.40 16 18 N -0.37 -5.07 4.04 -65.10 -0.26 -5.33 16 19 C 0.10 0.82 11.33 59.85 0.68 1.50 16 20 N -0.72 -15.55 4.44 -53.42 -0.24 -15.79 16 21 C -0.24 -5.77 7.57 -15.06 -0.11 -5.88 16 22 H 0.07 1.72 7.40 -52.49 -0.39 1.33 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -25.92 13.06 55.49 0.72 -25.20 16 25 Si 0.90 20.86 29.55 -169.99 -5.02 15.84 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.81 6.01 -51.93 -0.31 1.50 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.99 6.71 -51.93 -0.35 0.64 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.41 6.02 8.14 -40.82 -0.33 5.69 16 39 H 0.14 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.11 0.91 7.12 -51.93 -0.37 0.54 16 41 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.10 1.05 7.88 -51.93 -0.41 0.64 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.53 7.10 -51.93 -0.37 0.16 16 49 H 0.39 9.24 7.80 -40.82 -0.32 8.92 16 50 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 410.01 15.07 6.18 6.18 Total: -1.00 -33.00 410.01 -9.69 -42.69 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -8.24 Total: 13.98 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.91 Total: 2.23 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: 0.21 Total: -70.60 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.00 -9.69 -42.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268228260.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.812 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds