Wall clock time and date at job start Tue Mar 31 2020 20:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46768 * 2 1 4 4 C 1.53002 * 109.47074 * 119.99775 * 2 1 3 5 5 H 1.09008 * 109.46793 * 300.00478 * 4 2 1 6 6 C 1.53000 * 109.46776 * 60.00090 * 4 2 1 7 7 N 1.46499 * 109.46840 * 174.99842 * 6 4 2 8 8 C 1.34779 * 119.99872 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00071 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.50701 * 109.47064 * 180.02562 * 10 8 7 12 12 N 1.30825 * 125.95970 * 90.02509 * 11 10 8 13 13 C 1.33253 * 109.82675 * 180.02562 * 12 11 10 14 14 C 1.50697 * 125.52472 * 180.02562 * 13 12 11 15 15 C 1.53004 * 117.49606 * 188.74933 * 14 13 12 16 16 C 1.53001 * 117.49746 * 120.08837 * 14 13 12 17 17 N 1.30710 * 108.94363 * 359.97438 * 13 12 11 18 18 N 1.34427 * 125.95671 * 269.71561 * 11 10 8 19 19 C 1.46501 * 126.82998 * 0.02562 * 18 11 10 20 20 N 1.46496 * 109.47348 * 180.02562 * 4 2 1 21 21 C 1.36941 * 120.00198 * 84.99697 * 20 4 2 22 22 H 1.07996 * 119.99379 * 0.02562 * 21 20 4 23 23 C 1.38810 * 119.99828 * 180.02562 * 21 20 4 24 24 N 1.31617 * 120.00148 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99611 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47258 * 90.00522 * 25 23 21 27 27 H 1.48502 * 109.47182 * 210.00165 * 25 23 21 28 28 H 1.48501 * 109.47539 * 330.00366 * 25 23 21 29 29 H 1.08994 * 109.47439 * 300.00339 * 1 2 3 30 30 H 1.09001 * 109.46964 * 60.00077 * 1 2 3 31 31 H 1.08993 * 109.46700 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47420 * 240.00218 * 2 1 3 33 33 H 1.09001 * 109.46946 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47016 * 299.99680 * 3 2 1 35 35 H 1.09003 * 109.47072 * 60.00148 * 3 2 1 36 36 H 1.09002 * 109.47398 * 295.00168 * 6 4 2 37 37 H 1.09001 * 109.47194 * 55.00349 * 6 4 2 38 38 H 0.97000 * 120.00420 * 0.02562 * 7 6 4 39 39 H 1.09002 * 109.47152 * 300.00160 * 10 8 7 40 40 H 1.09001 * 109.46980 * 60.00059 * 10 8 7 41 41 H 1.08996 * 115.55358 * 334.41377 * 14 13 12 42 42 H 1.08997 * 117.49926 * 359.97438 * 15 14 13 43 43 H 1.08997 * 117.50101 * 145.02413 * 15 14 13 44 44 H 1.09003 * 117.49652 * 214.97619 * 16 14 13 45 45 H 1.09002 * 117.49606 * 359.97438 * 16 14 13 46 46 H 1.09000 * 109.47099 * 89.99806 * 19 18 11 47 47 H 1.08991 * 109.47372 * 210.00092 * 19 18 11 48 48 H 1.09002 * 109.46790 * 330.00547 * 19 18 11 49 49 H 0.97002 * 119.99429 * 265.00252 * 20 4 2 50 50 H 0.97004 * 120.00027 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5300 -2.1637 1.2493 7 7 2.1142 -2.8882 2.3807 8 6 1.8061 -4.1847 2.5821 9 8 1.0449 -4.7515 1.8270 10 6 2.4065 -4.9298 3.7463 11 6 1.9052 -6.3510 3.7455 12 7 2.4685 -7.3640 3.1388 13 6 1.7561 -8.4701 3.3496 14 6 2.0861 -9.8395 2.8140 15 6 1.0386 -10.9400 2.9948 16 6 2.3207 -10.9582 3.8310 17 7 0.7254 -8.1750 4.0973 18 7 0.8045 -6.8001 4.3730 19 6 -0.1296 -6.0114 5.1803 20 7 3.5050 -0.7207 1.2497 21 6 4.1893 0.3543 1.7511 22 1 3.6488 1.2015 2.1466 23 6 5.5774 0.3549 1.7509 24 7 6.2359 -0.6775 1.2684 25 14 6.5107 1.8210 2.4356 26 1 6.7585 1.6169 3.8855 27 1 7.8081 1.9572 1.7260 28 1 5.7075 3.0546 2.2396 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 0.4437 -2.1650 1.3388 37 1 1.8184 -2.6511 0.3179 38 1 2.7227 -2.4348 2.9849 39 1 3.4929 -4.9280 3.6575 40 1 2.1173 -4.4427 4.6776 41 1 2.6812 -9.8564 1.9010 42 1 0.1111 -10.6736 3.5016 43 1 0.9450 -11.6811 2.2011 44 1 3.0700 -11.7113 3.5869 45 1 2.2368 -10.7036 4.8876 46 1 -0.9202 -5.6185 4.5410 47 1 -0.5672 -6.6446 5.9519 48 1 0.4038 -5.1841 5.6484 49 1 3.9903 -1.4819 0.8946 50 1 7.2059 -0.6769 1.2679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268228260.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:08 Heat of formation + Delta-G solvation = 57.610172 kcal Electronic energy + Delta-G solvation = -28970.126812 eV Core-core repulsion = 25034.297088 eV Total energy + Delta-G solvation = -3935.829724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -43.25758 -40.74919 -38.76726 -38.15558 -35.29040 -34.91458 -34.88162 -33.69929 -32.15704 -30.54165 -29.10533 -28.13958 -27.41193 -25.55037 -24.74205 -23.57573 -23.28521 -22.17290 -21.32969 -20.93929 -20.56173 -19.18731 -18.24413 -18.06669 -17.20168 -16.92790 -16.81749 -16.34525 -16.33124 -15.70951 -15.66549 -15.20135 -15.04181 -14.89514 -14.61240 -14.46976 -14.24085 -14.10456 -13.81639 -13.41968 -13.17244 -13.11241 -12.88499 -12.83091 -12.71917 -12.65425 -12.41912 -12.39838 -12.25728 -11.99633 -11.87730 -11.73599 -11.48051 -11.43159 -11.26326 -11.15386 -11.04737 -10.81530 -10.70564 -10.17917 -10.02695 -8.92418 -7.83808 -5.10858 0.44524 1.30265 1.52290 1.54688 1.56093 1.60901 1.64450 2.29629 2.62810 2.81390 2.98666 3.36136 3.47802 3.49679 3.83309 3.87546 3.90146 3.96513 4.00028 4.07193 4.23520 4.28661 4.32002 4.34149 4.43007 4.48561 4.57723 4.61415 4.66396 4.73712 4.79837 4.89558 4.94227 5.00096 5.09369 5.10682 5.17323 5.22719 5.28291 5.28664 5.34122 5.37146 5.52772 5.64276 5.67966 5.76898 5.79228 6.35983 6.55797 7.05263 7.19936 7.44350 8.15798 8.40508 9.38854 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.002518 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.867145 B =11116.004614 C =12205.626000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.134 4.134 4 C 0.174 3.826 5 H 0.064 0.936 6 C 0.124 3.876 7 N -0.702 5.702 8 C 0.520 3.480 9 O -0.584 6.584 10 C -0.061 4.061 11 C 0.297 3.703 12 N -0.566 5.566 13 C 0.239 3.761 14 C -0.099 4.099 15 C -0.149 4.149 16 C -0.142 4.142 17 N -0.336 5.336 18 N -0.373 5.373 19 C 0.084 3.916 20 N -0.727 5.727 21 C -0.211 4.211 22 H 0.081 0.919 23 C -0.071 4.071 24 N -0.967 5.967 25 Si 0.956 3.044 26 H -0.289 1.289 27 H -0.308 1.308 28 H -0.272 1.272 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.416 0.584 39 H 0.141 0.859 40 H 0.162 0.838 41 H 0.131 0.869 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.124 0.876 49 H 0.372 0.628 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.564 -10.995 8.875 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 C -0.192 4.192 4 C 0.065 3.935 5 H 0.082 0.918 6 C -0.001 4.001 7 N -0.353 5.353 8 C 0.305 3.695 9 O -0.464 6.464 10 C -0.103 4.103 11 C 0.020 3.980 12 N -0.295 5.295 13 C -0.042 4.042 14 C -0.120 4.120 15 C -0.187 4.187 16 C -0.180 4.180 17 N -0.166 5.166 18 N -0.163 5.163 19 C -0.057 4.057 20 N -0.367 5.367 21 C -0.343 4.343 22 H 0.099 0.901 23 C -0.264 4.264 24 N -0.618 5.618 25 Si 0.787 3.213 26 H -0.216 1.216 27 H -0.236 1.236 28 H -0.197 1.197 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.253 0.747 39 H 0.159 0.841 40 H 0.180 0.820 41 H 0.149 0.851 42 H 0.110 0.890 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.126 0.874 48 H 0.142 0.858 49 H 0.204 0.796 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.402 -11.605 8.554 20.378 hybrid contribution 1.407 1.137 0.018 1.809 sum -12.995 -10.468 8.573 18.760 Atomic orbital electron populations 1.21845 0.93991 1.01763 1.02202 1.21648 0.95886 0.96834 0.98615 1.21730 1.01673 0.95482 1.00290 1.20684 0.83926 0.92111 0.96812 0.91844 1.21607 0.98033 0.92061 0.88358 1.45847 1.48338 1.10463 1.30677 1.20424 0.80940 0.82009 0.86116 1.90720 1.38475 1.68361 1.48885 1.20304 1.04600 0.84941 1.00431 1.23682 0.86221 0.96599 0.91530 1.70216 1.33676 0.98782 1.26789 1.23629 0.89495 0.95674 0.95401 1.20245 1.07218 0.82168 1.02374 1.23096 0.93502 0.98701 1.03356 1.23103 1.00408 0.98329 0.96180 1.77786 1.23022 0.92038 1.23707 1.50355 1.20804 1.06134 1.39048 1.22375 0.92591 0.95648 0.95043 1.42595 1.00509 1.20143 1.73434 1.19454 0.88673 0.96568 1.29626 0.90121 1.25333 0.97659 0.99733 1.03639 1.69803 1.06318 1.31753 1.53939 0.85395 0.77909 0.80404 0.77570 1.21592 1.23594 1.19746 0.91894 0.92376 0.92476 0.93546 0.93219 0.93315 0.93215 0.89886 0.93926 0.74700 0.84145 0.82035 0.85142 0.89046 0.85573 0.85338 0.89389 0.90055 0.87438 0.85798 0.79612 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.84 71.98 0.64 -2.72 16 2 C -0.11 -3.37 2.69 -10.79 -0.03 -3.40 16 3 C -0.13 -4.43 8.26 71.98 0.59 -3.84 16 4 C 0.17 5.73 2.18 44.99 0.10 5.83 16 5 H 0.06 2.02 8.08 -2.38 -0.02 2.00 16 6 C 0.12 3.81 4.73 86.38 0.41 4.22 16 7 N -0.70 -20.14 5.39 -463.05 -2.49 -22.64 16 8 C 0.52 15.40 7.82 87.66 0.69 16.09 16 9 O -0.58 -22.31 16.03 -3.02 -0.05 -22.36 16 10 C -0.06 -1.38 6.03 29.10 0.18 -1.20 16 11 C 0.30 8.62 6.48 138.23 0.90 9.51 16 12 N -0.57 -19.50 11.19 -179.73 -2.01 -21.52 16 13 C 0.24 7.51 7.69 138.63 1.07 8.57 16 14 C -0.10 -2.37 6.33 -11.54 -0.07 -2.44 16 15 C -0.15 -2.66 10.14 30.62 0.31 -2.35 16 16 C -0.14 -2.45 10.24 30.62 0.31 -2.13 16 17 N -0.34 -10.15 12.24 -51.33 -0.63 -10.78 16 18 N -0.37 -9.78 4.04 -359.88 -1.45 -11.23 16 19 C 0.08 1.25 11.33 127.77 1.45 2.70 16 20 N -0.73 -31.09 4.44 -322.94 -1.43 -32.52 16 21 C -0.21 -10.07 7.57 84.03 0.64 -9.43 16 22 H 0.08 3.68 7.40 -2.91 -0.02 3.66 16 23 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 24 N -0.97 -55.22 13.06 21.65 0.28 -54.94 16 25 Si 0.96 43.07 29.55 68.60 2.03 45.09 16 26 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 27 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.31 6.54 -2.39 -0.02 1.29 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.05 2.01 6.01 -2.39 -0.01 2.00 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 2.30 6.71 -2.39 -0.02 2.29 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.42 11.50 8.14 -92.71 -0.75 10.74 16 39 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.16 2.00 7.12 -2.39 -0.02 1.99 16 41 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.09 1.85 7.88 -2.39 -0.02 1.83 16 43 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.12 1.00 7.10 -2.39 -0.02 0.98 16 49 H 0.37 18.06 7.80 -92.71 -0.72 17.34 16 50 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -73.80 410.01 1.35 -72.44 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: -0.52 Total: 42.30 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 7.63 Total: 16.14 kcal Atomic # 7 Polarization: -145.88 SS G_CDS: -7.74 Total: -153.62 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -73.80 1.35 -72.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268228260.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.055 kcal (2) G-P(sol) polarization free energy of solvation -73.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds