Wall clock time and date at job start Tue Mar 31 2020 20:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46818 * 2 1 4 4 C 1.52997 * 109.47241 * 120.00077 * 2 1 3 5 5 H 1.09004 * 109.46812 * 60.00212 * 4 2 1 6 6 C 1.52999 * 109.47114 * 300.00025 * 4 2 1 7 7 N 1.46500 * 109.47226 * 184.99495 * 6 4 2 8 8 C 1.34776 * 119.99923 * 180.02562 * 7 6 4 9 9 O 1.21272 * 120.00513 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99846 * 180.02562 * 8 7 6 11 11 C 1.50694 * 109.47468 * 180.02562 * 10 8 7 12 12 N 1.30837 * 125.96251 * 90.02005 * 11 10 8 13 13 C 1.33241 * 109.82951 * 180.02562 * 12 11 10 14 14 C 1.50700 * 125.52608 * 180.02562 * 13 12 11 15 15 C 1.52998 * 117.49915 * 188.74673 * 14 13 12 16 16 C 1.52993 * 117.50081 * 120.08273 * 14 13 12 17 17 N 1.30718 * 108.94716 * 359.97438 * 13 12 11 18 18 N 1.34430 * 125.96189 * 269.72487 * 11 10 8 19 19 C 1.46497 * 126.82319 * 359.97438 * 18 11 10 20 20 N 1.46498 * 109.47036 * 180.02562 * 4 2 1 21 21 C 1.36943 * 119.99752 * 274.72222 * 20 4 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 4 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 4 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47213 * 60.00246 * 25 23 21 27 27 H 1.48502 * 109.47317 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 299.99875 * 25 23 21 29 29 H 1.09000 * 109.47191 * 60.00002 * 1 2 3 30 30 H 1.08995 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47066 * 299.99675 * 1 2 3 32 32 H 1.08997 * 109.47066 * 240.00325 * 2 1 3 33 33 H 1.09003 * 109.46809 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47238 * 299.99969 * 3 2 1 35 35 H 1.08997 * 109.47037 * 60.00307 * 3 2 1 36 36 H 1.08995 * 109.47415 * 304.99804 * 6 4 2 37 37 H 1.09008 * 109.47087 * 65.00143 * 6 4 2 38 38 H 0.96998 * 120.00120 * 0.02562 * 7 6 4 39 39 H 1.08997 * 109.47068 * 300.00700 * 10 8 7 40 40 H 1.09008 * 109.46877 * 60.00083 * 10 8 7 41 41 H 1.09004 * 115.54825 * 334.40994 * 14 13 12 42 42 H 1.09004 * 117.50055 * 359.97438 * 15 14 13 43 43 H 1.08996 * 117.49967 * 145.01662 * 15 14 13 44 44 H 1.08992 * 117.50174 * 214.97843 * 16 14 13 45 45 H 1.09002 * 117.49934 * 359.97438 * 16 14 13 46 46 H 1.08995 * 109.47383 * 90.00446 * 19 18 11 47 47 H 1.09001 * 109.47334 * 210.00563 * 19 18 11 48 48 H 1.08998 * 109.47304 * 330.00410 * 19 18 11 49 49 H 0.97001 * 120.00384 * 95.00578 * 20 4 2 50 50 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -1.7489 1.2491 6 6 1.5301 0.0000 2.4984 7 7 2.1141 -0.6177 3.6916 8 6 1.8052 -0.1446 4.9152 9 8 1.0434 0.7922 5.0286 10 6 2.4065 -0.7796 6.1425 11 6 1.9031 -0.0702 7.3730 12 7 0.8295 -0.3802 8.0535 13 6 0.6873 0.4575 9.0798 14 6 -0.4284 0.4208 10.0921 15 6 -0.5302 1.5896 11.0741 16 6 -0.0446 0.2215 11.5597 17 7 1.6732 1.3158 9.0669 18 7 2.4819 0.9882 7.9663 19 6 3.7104 1.6670 7.5466 20 7 3.5050 -0.7207 1.2495 21 6 4.1902 -1.6951 0.5739 22 1 3.6505 -2.4614 0.0372 23 6 5.5783 -1.6979 0.5789 24 7 6.2359 -0.7643 1.2334 25 14 6.5129 -3.0267 -0.3432 26 1 6.1595 -2.9710 -1.7845 27 1 7.9728 -2.8075 -0.1822 28 1 6.1495 -4.3583 0.2045 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.8184 1.0502 2.4549 37 1 0.4437 -0.0770 2.5444 38 1 2.7232 -1.3672 3.6010 39 1 2.1190 -1.8301 6.1859 40 1 3.4928 -0.7019 6.0966 41 1 -1.3593 -0.0311 9.7495 42 1 0.2102 2.3850 10.9883 43 1 -1.5279 1.9063 11.3779 44 1 -0.7231 -0.3612 12.1827 45 1 1.0149 0.1165 11.7930 46 1 3.4630 2.4689 6.8510 47 1 4.2111 2.0851 8.4198 48 1 4.3713 0.9520 7.0565 49 1 3.9897 -0.0325 1.7315 50 1 7.2059 -0.7661 1.2366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268228261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:16 Heat of formation + Delta-G solvation = 79.161084 kcal Electronic energy + Delta-G solvation = -29083.665731 eV Core-core repulsion = 25148.770525 eV Total energy + Delta-G solvation = -3934.895206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.20167 -39.48760 -37.50477 -37.26328 -33.93331 -33.83244 -33.30489 -32.61122 -30.47773 -29.24785 -27.59141 -26.86885 -26.62573 -23.94714 -23.79829 -22.62125 -22.53981 -21.18428 -20.16981 -19.79197 -18.66646 -17.48232 -17.10195 -16.97451 -16.14305 -15.77247 -15.46692 -15.39141 -14.90685 -14.70917 -14.15238 -13.95681 -13.71447 -13.48688 -13.47315 -13.33540 -13.21715 -12.88717 -12.82158 -12.29913 -12.19570 -12.06830 -11.81146 -11.62818 -11.46290 -11.18418 -11.04302 -11.02695 -10.93903 -10.71838 -10.66516 -10.40203 -10.28226 -9.97491 -9.91764 -9.80539 -9.73261 -9.58608 -9.20497 -8.99858 -8.69372 -7.10325 -5.89594 -3.19187 1.52368 2.23220 2.68873 2.77903 3.35113 3.40895 3.41622 3.44584 3.72003 3.86449 4.28945 4.40606 4.48026 4.66885 4.77909 4.84021 4.95750 5.00977 5.05738 5.26098 5.31031 5.33175 5.35824 5.41435 5.45195 5.49773 5.58859 5.60930 5.70199 5.78162 5.89679 5.93099 5.95331 6.05876 6.13285 6.27730 6.30554 6.34104 6.40297 6.41875 6.56949 6.68833 6.73497 6.80756 6.97875 7.00641 7.59340 7.79513 8.11979 8.28136 8.42500 9.40544 9.94364 10.30472 11.32105 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.002564 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.839796 B =10918.322202 C =12077.778199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.112 3.888 7 N -0.708 5.708 8 C 0.517 3.483 9 O -0.543 6.543 10 C -0.069 4.069 11 C 0.309 3.691 12 N -0.529 5.529 13 C 0.252 3.748 14 C -0.068 4.068 15 C -0.161 4.161 16 C -0.160 4.160 17 N -0.318 5.318 18 N -0.371 5.371 19 C 0.094 3.906 20 N -0.719 5.719 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.009 4.009 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.412 0.588 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.385 0.615 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.004 2.176 13.685 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.012 4.012 7 N -0.359 5.359 8 C 0.300 3.700 9 O -0.420 6.420 10 C -0.112 4.112 11 C 0.032 3.968 12 N -0.256 5.256 13 C -0.029 4.029 14 C -0.089 4.089 15 C -0.199 4.199 16 C -0.199 4.199 17 N -0.147 5.147 18 N -0.160 5.160 19 C -0.048 4.048 20 N -0.361 5.361 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.205 4.205 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.248 0.752 39 H 0.149 0.851 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.102 0.898 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.219 0.781 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.477 3.055 14.063 17.231 hybrid contribution 1.363 -0.795 -0.913 1.823 sum -8.115 2.260 13.150 15.616 Atomic orbital electron populations 1.21928 0.96722 1.01023 1.01040 1.21717 0.93609 0.97146 1.00789 1.21770 1.02575 0.95642 0.99802 1.20517 0.86357 0.96737 0.90459 0.92768 1.21838 0.97355 0.97874 0.84155 1.45916 1.48470 1.36566 1.04987 1.19965 0.81886 0.83833 0.84301 1.90732 1.36070 1.28561 1.86667 1.20211 1.02448 1.01608 0.86892 1.23303 0.90133 0.88114 0.95293 1.70209 1.17591 1.29797 1.08042 1.23000 0.94924 0.90389 0.94616 1.20024 0.95689 1.05583 0.87556 1.23036 1.03309 0.92084 1.01510 1.23028 1.02503 0.99865 0.94455 1.77885 1.06544 1.23713 1.06511 1.50057 1.21207 1.23968 1.20800 1.22008 0.82383 0.98619 1.01839 1.42432 0.98700 1.33268 1.61675 1.19170 0.88898 1.04443 1.24755 0.91181 1.24710 0.96412 0.98646 1.00751 1.69643 1.07002 1.34891 1.46324 0.86309 0.79003 0.81387 0.79683 1.21323 1.21796 1.21269 0.93516 0.93172 0.92941 0.90911 0.91351 0.94252 0.93615 0.91377 0.91564 0.75171 0.85094 0.86308 0.85224 0.87888 0.87940 0.87845 0.88630 0.89840 0.88922 0.88727 0.78079 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.84 37.16 0.33 -1.70 16 2 C -0.11 -1.80 2.92 -90.62 -0.26 -2.07 16 3 C -0.14 -2.30 8.69 37.16 0.32 -1.98 16 4 C 0.17 2.95 2.27 -67.93 -0.15 2.79 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.79 4.51 -4.04 -0.02 1.77 16 7 N -0.71 -10.67 5.39 -60.29 -0.32 -10.99 16 8 C 0.52 7.94 7.82 -10.98 -0.09 7.85 16 9 O -0.54 -10.42 16.03 5.56 0.09 -10.33 16 10 C -0.07 -0.84 6.03 -29.04 -0.17 -1.01 16 11 C 0.31 4.57 6.48 -155.69 -1.01 3.56 16 12 N -0.53 -8.65 11.19 -8.16 -0.09 -8.74 16 13 C 0.25 3.83 7.69 -156.85 -1.21 2.62 16 14 C -0.07 -0.78 6.33 -91.78 -0.58 -1.36 16 15 C -0.16 -1.49 10.14 -26.69 -0.27 -1.76 16 16 C -0.16 -1.42 10.24 -26.70 -0.27 -1.69 16 17 N -0.32 -4.87 12.24 32.42 0.40 -4.47 16 18 N -0.37 -5.25 4.04 -65.10 -0.26 -5.51 16 19 C 0.09 0.94 11.33 59.85 0.68 1.62 16 20 N -0.72 -15.37 3.79 -53.43 -0.20 -15.58 16 21 C -0.24 -5.92 9.93 -15.06 -0.15 -6.07 16 22 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 24 N -0.93 -25.50 13.06 55.49 0.72 -24.77 16 25 Si 0.91 20.83 29.55 -169.99 -5.02 15.80 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.69 6.54 -51.93 -0.34 0.35 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.30 7.60 -51.93 -0.39 0.91 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.71 6.32 -51.93 -0.33 0.38 16 36 H 0.07 1.17 6.17 -51.93 -0.32 0.85 16 37 H 0.07 1.03 6.71 -51.92 -0.35 0.69 16 38 H 0.41 6.08 8.14 -40.82 -0.33 5.74 16 39 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.12 1.11 7.12 -51.92 -0.37 0.74 16 41 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.10 1.06 7.88 -51.93 -0.41 0.65 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.09 0.75 7.10 -51.93 -0.37 0.38 16 49 H 0.39 8.94 7.80 -40.82 -0.32 8.63 16 50 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 410.48 15.07 6.19 6.19 Total: -1.00 -32.44 410.48 -9.61 -42.05 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -8.15 Total: 14.08 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.95 Total: 2.26 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: 0.24 Total: -70.06 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.44 -9.61 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268228261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.212 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds