Wall clock time and date at job start Tue Mar 31 2020 20:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46818 * 2 1 4 4 C 1.52997 * 109.47241 * 120.00077 * 2 1 3 5 5 H 1.09004 * 109.46812 * 60.00212 * 4 2 1 6 6 C 1.52999 * 109.47114 * 300.00025 * 4 2 1 7 7 N 1.46500 * 109.47226 * 184.99495 * 6 4 2 8 8 C 1.34776 * 119.99923 * 180.02562 * 7 6 4 9 9 O 1.21272 * 120.00513 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99846 * 180.02562 * 8 7 6 11 11 C 1.50694 * 109.47468 * 180.02562 * 10 8 7 12 12 N 1.30837 * 125.96251 * 90.02005 * 11 10 8 13 13 C 1.33241 * 109.82951 * 180.02562 * 12 11 10 14 14 C 1.50700 * 125.52608 * 180.02562 * 13 12 11 15 15 C 1.52998 * 117.49915 * 188.74673 * 14 13 12 16 16 C 1.52993 * 117.50081 * 120.08273 * 14 13 12 17 17 N 1.30718 * 108.94716 * 359.97438 * 13 12 11 18 18 N 1.34430 * 125.96189 * 269.72487 * 11 10 8 19 19 C 1.46497 * 126.82319 * 359.97438 * 18 11 10 20 20 N 1.46498 * 109.47036 * 180.02562 * 4 2 1 21 21 C 1.36943 * 119.99752 * 274.72222 * 20 4 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 4 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 4 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47213 * 60.00246 * 25 23 21 27 27 H 1.48502 * 109.47317 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 299.99875 * 25 23 21 29 29 H 1.09000 * 109.47191 * 60.00002 * 1 2 3 30 30 H 1.08995 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47066 * 299.99675 * 1 2 3 32 32 H 1.08997 * 109.47066 * 240.00325 * 2 1 3 33 33 H 1.09003 * 109.46809 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47238 * 299.99969 * 3 2 1 35 35 H 1.08997 * 109.47037 * 60.00307 * 3 2 1 36 36 H 1.08995 * 109.47415 * 304.99804 * 6 4 2 37 37 H 1.09008 * 109.47087 * 65.00143 * 6 4 2 38 38 H 0.96998 * 120.00120 * 0.02562 * 7 6 4 39 39 H 1.08997 * 109.47068 * 300.00700 * 10 8 7 40 40 H 1.09008 * 109.46877 * 60.00083 * 10 8 7 41 41 H 1.09004 * 115.54825 * 334.40994 * 14 13 12 42 42 H 1.09004 * 117.50055 * 359.97438 * 15 14 13 43 43 H 1.08996 * 117.49967 * 145.01662 * 15 14 13 44 44 H 1.08992 * 117.50174 * 214.97843 * 16 14 13 45 45 H 1.09002 * 117.49934 * 359.97438 * 16 14 13 46 46 H 1.08995 * 109.47383 * 90.00446 * 19 18 11 47 47 H 1.09001 * 109.47334 * 210.00563 * 19 18 11 48 48 H 1.08998 * 109.47304 * 330.00410 * 19 18 11 49 49 H 0.97001 * 120.00384 * 95.00578 * 20 4 2 50 50 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -1.7489 1.2491 6 6 1.5301 0.0000 2.4984 7 7 2.1141 -0.6177 3.6916 8 6 1.8052 -0.1446 4.9152 9 8 1.0434 0.7922 5.0286 10 6 2.4065 -0.7796 6.1425 11 6 1.9031 -0.0702 7.3730 12 7 0.8295 -0.3802 8.0535 13 6 0.6873 0.4575 9.0798 14 6 -0.4284 0.4208 10.0921 15 6 -0.5302 1.5896 11.0741 16 6 -0.0446 0.2215 11.5597 17 7 1.6732 1.3158 9.0669 18 7 2.4819 0.9882 7.9663 19 6 3.7104 1.6670 7.5466 20 7 3.5050 -0.7207 1.2495 21 6 4.1902 -1.6951 0.5739 22 1 3.6505 -2.4614 0.0372 23 6 5.5783 -1.6979 0.5789 24 7 6.2359 -0.7643 1.2334 25 14 6.5129 -3.0267 -0.3432 26 1 6.1595 -2.9710 -1.7845 27 1 7.9728 -2.8075 -0.1822 28 1 6.1495 -4.3583 0.2045 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.8184 1.0502 2.4549 37 1 0.4437 -0.0770 2.5444 38 1 2.7232 -1.3672 3.6010 39 1 2.1190 -1.8301 6.1859 40 1 3.4928 -0.7019 6.0966 41 1 -1.3593 -0.0311 9.7495 42 1 0.2102 2.3850 10.9883 43 1 -1.5279 1.9063 11.3779 44 1 -0.7231 -0.3612 12.1827 45 1 1.0149 0.1165 11.7930 46 1 3.4630 2.4689 6.8510 47 1 4.2111 2.0851 8.4198 48 1 4.3713 0.9520 7.0565 49 1 3.9897 -0.0325 1.7315 50 1 7.2059 -0.7661 1.2366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268228261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:15 Heat of formation + Delta-G solvation = 58.900543 kcal Electronic energy + Delta-G solvation = -29084.544294 eV Core-core repulsion = 25148.770525 eV Total energy + Delta-G solvation = -3935.773769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.26110 -40.77539 -38.83682 -38.15019 -35.19276 -35.02419 -34.90579 -33.68750 -32.17634 -30.41690 -28.73434 -28.04188 -27.88562 -25.60935 -24.74476 -24.04801 -23.29676 -22.34001 -21.26368 -20.85627 -19.99949 -19.25518 -18.22241 -18.08041 -17.45178 -16.84945 -16.73418 -16.44747 -16.26020 -15.82786 -15.49703 -15.28537 -14.99642 -14.90942 -14.65700 -14.43074 -14.29594 -14.11239 -14.02059 -13.62612 -13.19771 -13.11112 -12.81767 -12.78392 -12.73196 -12.63490 -12.48912 -12.39734 -12.17172 -12.10754 -11.88189 -11.84926 -11.48789 -11.47373 -11.23680 -11.12745 -11.06003 -10.83589 -10.71032 -10.19672 -10.00353 -8.93065 -7.86658 -5.13559 0.44871 1.28495 1.53229 1.54657 1.56660 1.59386 1.63811 2.29536 2.61530 2.80280 2.99431 3.35530 3.46883 3.48909 3.82363 3.88525 3.91453 3.97024 3.99741 4.07154 4.23022 4.24619 4.25375 4.36552 4.39996 4.46911 4.54538 4.55939 4.61922 4.74857 4.76366 4.88039 4.90344 4.96713 5.10776 5.11710 5.17130 5.23543 5.26260 5.26887 5.31798 5.38123 5.47976 5.58658 5.63570 5.68751 5.74450 6.34260 6.55705 7.03671 7.19778 7.43096 8.14483 8.40424 9.35353 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.002564 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.839796 B =10918.322202 C =12077.778199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.134 4.134 4 C 0.172 3.828 5 H 0.058 0.942 6 C 0.122 3.878 7 N -0.703 5.703 8 C 0.520 3.480 9 O -0.583 6.583 10 C -0.062 4.062 11 C 0.297 3.703 12 N -0.559 5.559 13 C 0.239 3.761 14 C -0.095 4.095 15 C -0.152 4.152 16 C -0.142 4.142 17 N -0.339 5.339 18 N -0.375 5.375 19 C 0.085 3.915 20 N -0.722 5.722 21 C -0.229 4.229 22 H 0.074 0.926 23 C -0.064 4.064 24 N -0.962 5.962 25 Si 0.959 3.041 26 H -0.288 1.288 27 H -0.303 1.303 28 H -0.278 1.278 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.035 0.965 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.415 0.585 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.136 0.864 42 H 0.088 0.912 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.118 0.882 49 H 0.375 0.625 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 1.357 14.122 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.191 4.191 4 C 0.063 3.937 5 H 0.075 0.925 6 C -0.003 4.003 7 N -0.354 5.354 8 C 0.305 3.695 9 O -0.464 6.464 10 C -0.103 4.103 11 C 0.020 3.980 12 N -0.287 5.287 13 C -0.042 4.042 14 C -0.116 4.116 15 C -0.190 4.190 16 C -0.180 4.180 17 N -0.168 5.168 18 N -0.165 5.165 19 C -0.056 4.056 20 N -0.362 5.362 21 C -0.361 4.361 22 H 0.092 0.908 23 C -0.257 4.257 24 N -0.613 5.613 25 Si 0.790 3.210 26 H -0.214 1.214 27 H -0.229 1.229 28 H -0.204 1.204 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.252 0.748 39 H 0.171 0.829 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.107 0.893 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.127 0.873 48 H 0.136 0.864 49 H 0.208 0.792 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.551 2.217 14.483 18.055 hybrid contribution 1.620 -0.502 -1.076 2.009 sum -8.931 1.715 13.407 16.200 Atomic orbital electron populations 1.21846 0.94068 1.02012 1.01989 1.21620 0.95782 0.96496 0.99044 1.21693 1.00372 0.96116 1.00960 1.20637 0.84075 0.97277 0.91703 0.92452 1.21666 0.97751 0.96984 0.83852 1.45867 1.48291 1.36434 1.04841 1.20408 0.81049 0.83081 0.84942 1.90717 1.37983 1.30454 1.87211 1.20305 1.03896 1.02011 0.84138 1.23707 0.90074 0.88426 0.95775 1.70195 1.18623 1.30936 1.08955 1.23687 0.95602 0.89934 0.94972 1.20254 0.95179 1.08005 0.88170 1.23096 1.04240 0.91537 1.00099 1.23101 1.02577 0.99737 0.92619 1.77815 1.07146 1.24317 1.07549 1.50317 1.21833 1.23918 1.20408 1.22310 0.81520 0.99082 1.02658 1.42477 1.00292 1.32291 1.61164 1.19459 0.89053 1.04290 1.23275 0.90788 1.25300 0.97418 1.00597 1.02415 1.69774 1.06480 1.36656 1.48355 0.85432 0.77225 0.79804 0.78531 1.21433 1.22950 1.20427 0.92155 0.92197 0.92425 0.92770 0.94581 0.92648 0.92921 0.92577 0.90634 0.74771 0.82900 0.83298 0.84655 0.89350 0.85467 0.85135 0.89598 0.90391 0.87324 0.86376 0.79240 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.84 71.98 0.64 -2.85 16 2 C -0.11 -3.38 2.92 -10.79 -0.03 -3.41 16 3 C -0.13 -4.29 8.69 71.98 0.63 -3.66 16 4 C 0.17 5.78 2.27 44.99 0.10 5.88 16 5 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 6 C 0.12 3.77 4.51 86.38 0.39 4.16 16 7 N -0.70 -20.40 5.39 -463.07 -2.49 -22.89 16 8 C 0.52 15.48 7.82 87.66 0.69 16.16 16 9 O -0.58 -22.26 16.03 -3.00 -0.05 -22.31 16 10 C -0.06 -1.40 6.03 29.10 0.18 -1.23 16 11 C 0.30 8.64 6.48 138.22 0.90 9.53 16 12 N -0.56 -18.24 11.19 -179.73 -2.01 -20.25 16 13 C 0.24 7.30 7.69 138.63 1.07 8.36 16 14 C -0.10 -2.13 6.33 -11.54 -0.07 -2.21 16 15 C -0.15 -2.62 10.14 30.62 0.31 -2.31 16 16 C -0.14 -2.31 10.24 30.62 0.31 -2.00 16 17 N -0.34 -10.45 12.24 -51.33 -0.63 -11.08 16 18 N -0.38 -10.48 4.04 -359.89 -1.45 -11.94 16 19 C 0.09 1.64 11.33 127.77 1.45 3.09 16 20 N -0.72 -30.59 3.79 -322.94 -1.22 -31.81 16 21 C -0.23 -11.07 9.93 84.03 0.83 -10.24 16 22 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 23 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 24 N -0.96 -53.17 13.06 21.65 0.28 -52.89 16 25 Si 0.96 42.72 29.55 68.60 2.03 44.74 16 26 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.37 6.54 -2.39 -0.02 1.36 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.03 1.37 7.60 -2.39 -0.02 1.35 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.59 6.32 -2.39 -0.02 1.58 16 36 H 0.06 1.90 6.17 -2.39 -0.01 1.88 16 37 H 0.08 2.23 6.71 -2.38 -0.02 2.22 16 38 H 0.42 11.68 8.14 -92.71 -0.75 10.92 16 39 H 0.15 2.79 8.14 -2.39 -0.02 2.78 16 40 H 0.15 2.44 7.12 -2.38 -0.02 2.42 16 41 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.09 1.80 7.88 -2.38 -0.02 1.78 16 43 H 0.13 1.52 8.14 -2.39 -0.02 1.51 16 44 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.12 1.66 7.10 -2.39 -0.02 1.65 16 49 H 0.38 17.50 7.80 -92.71 -0.72 16.78 16 50 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -70.69 410.48 1.78 -68.91 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -0.52 Total: 43.08 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 7.84 Total: 16.43 kcal Atomic # 7 Polarization: -143.33 SS G_CDS: -7.53 Total: -150.86 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -70.69 1.78 -68.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268228261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.813 kcal (2) G-P(sol) polarization free energy of solvation -70.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds