Wall clock time and date at job start Tue Mar 31 2020 20:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.46947 * 2 1 4 4 C 1.52994 * 109.47520 * 120.00289 * 2 1 3 5 5 C 1.52999 * 109.46951 * 64.99961 * 4 2 1 6 6 N 1.46503 * 109.46905 * 180.02562 * 5 4 2 7 7 C 1.34816 * 126.59305 * 125.00274 * 6 5 4 8 8 C 1.36595 * 106.84118 * 179.97438 * 7 6 5 9 9 C 1.47524 * 125.77530 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99557 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00249 * 179.97438 * 9 8 7 12 12 C 1.47429 * 125.64995 * 5.20159 * 11 9 8 13 13 C 1.54908 * 104.83434 * 155.88782 * 12 11 9 14 14 C 1.55165 * 101.57854 * 37.01129 * 13 12 11 15 15 C 1.47022 * 125.65069 * 185.22202 * 11 9 8 16 16 H 1.08995 * 110.01324 * 300.53417 * 15 11 9 17 17 C 1.52999 * 109.87980 * 61.62328 * 15 11 9 18 18 N 1.46500 * 109.47416 * 183.44495 * 17 15 11 19 19 C 1.36933 * 120.00548 * 175.01937 * 18 17 15 20 20 H 1.07997 * 119.99643 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00327 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99841 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00048 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47224 * 269.99834 * 23 21 19 25 25 H 1.48507 * 109.46954 * 30.00171 * 23 21 19 26 26 H 1.48499 * 109.47108 * 149.99834 * 23 21 19 27 27 N 1.34409 * 108.45720 * 0.23702 * 8 7 6 28 28 N 1.28759 * 109.51897 * 359.59437 * 27 8 7 29 29 H 1.09006 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47407 * 299.99563 * 1 2 3 31 31 H 1.09004 * 109.47691 * 59.99971 * 1 2 3 32 32 H 1.09005 * 109.46940 * 240.00687 * 2 1 3 33 33 H 1.08997 * 109.47550 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47632 * 300.00387 * 3 2 1 35 35 H 1.09010 * 109.47175 * 60.00508 * 3 2 1 36 36 H 1.09008 * 109.46840 * 305.00333 * 4 2 1 37 37 H 1.08998 * 109.47515 * 185.00030 * 4 2 1 38 38 H 1.09000 * 109.47303 * 60.00480 * 5 4 2 39 39 H 1.09004 * 109.47063 * 299.99877 * 5 4 2 40 40 H 1.07999 * 126.58269 * 359.97438 * 7 6 5 41 41 H 1.09004 * 110.36359 * 37.05217 * 12 11 9 42 42 H 1.08996 * 110.45896 * 274.78136 * 12 11 9 43 43 H 1.09003 * 111.00615 * 278.93972 * 13 12 11 44 44 H 1.09002 * 111.00209 * 155.08238 * 13 12 11 45 45 H 1.08995 * 110.71601 * 206.13457 * 14 13 12 46 46 H 1.09000 * 110.72088 * 82.86079 * 14 13 12 47 47 H 1.09002 * 109.47045 * 63.44590 * 17 15 11 48 48 H 1.09001 * 109.47632 * 303.44407 * 17 15 11 49 49 H 0.97004 * 119.99609 * 355.01608 * 18 17 15 50 50 H 0.96996 * 120.00483 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8860 2.3842 7 6 1.3858 -3.6053 3.2539 8 6 2.2427 -4.0665 4.2124 9 6 1.8723 -4.9021 5.3704 10 8 0.7150 -5.2384 5.5321 11 7 2.8168 -5.2936 6.2485 12 6 4.2299 -4.8735 6.2347 13 6 4.7114 -5.0534 7.6960 14 6 3.9580 -6.3434 8.1156 15 6 2.6087 -6.2108 7.3786 16 1 1.8555 -5.8054 8.0542 17 6 2.1612 -7.5797 6.8621 18 7 1.8774 -8.4611 7.9973 19 6 1.3613 -9.7110 7.7816 20 1 1.1631 -10.0468 6.7745 21 6 1.0919 -10.5459 8.8573 22 7 1.3330 -10.1364 10.0847 23 14 0.3872 -12.2507 8.5629 24 1 -1.0962 -12.1803 8.5655 25 1 0.8564 -12.7602 7.2493 26 1 0.8411 -13.1667 9.6400 27 7 3.4795 -3.6254 3.9254 28 7 3.4469 -2.9264 2.8446 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6053 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2950 38 1 2.0699 -2.6550 0.3000 39 1 0.5489 -2.2724 1.1419 40 1 0.3217 -3.7828 3.2026 41 1 4.3121 -3.8290 5.9341 42 1 4.8093 -5.5074 5.5635 43 1 4.4107 -4.2070 8.3135 44 1 5.7907 -5.2007 7.7364 45 1 3.8072 -6.3681 9.1948 46 1 4.4953 -7.2303 7.7798 47 1 2.9536 -8.0151 6.2533 48 1 1.2612 -7.4638 6.2583 49 1 2.0551 -8.1593 8.9019 50 1 1.1451 -10.7199 10.8364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270263165.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:40 Heat of formation + Delta-G solvation = 65.691042 kcal Electronic energy + Delta-G solvation = -28685.431155 eV Core-core repulsion = 24749.951844 eV Total energy + Delta-G solvation = -3935.479311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -42.36298 -39.72204 -37.77388 -37.20718 -34.66729 -34.32607 -31.78297 -31.20881 -31.03068 -29.69710 -28.50101 -27.76761 -25.06754 -25.06177 -24.18117 -22.44060 -22.09728 -21.78325 -20.70976 -20.47053 -19.15375 -17.71603 -16.92107 -16.49944 -16.39795 -16.09527 -15.82764 -15.20802 -14.87530 -14.59962 -14.39321 -14.22643 -13.93996 -13.71141 -13.59792 -13.25732 -13.14769 -12.89904 -12.62894 -12.60461 -12.56192 -12.38091 -12.14427 -12.00993 -11.61571 -11.57257 -11.43951 -11.28852 -11.17189 -10.87912 -10.78482 -10.73235 -10.54326 -10.40211 -10.29958 -9.97270 -9.88041 -9.61671 -9.40528 -8.77656 -8.31552 -6.82401 -5.67893 -2.95627 0.97580 1.68304 1.77669 3.10295 3.41124 3.50315 3.55019 3.56856 3.83746 4.05185 4.13458 4.25268 4.37943 4.50469 4.61827 4.67525 4.68971 4.79482 4.83693 4.99745 5.03244 5.06624 5.10021 5.21020 5.22663 5.27236 5.33906 5.40254 5.50949 5.57109 5.60764 5.67186 5.70059 5.73841 5.75291 5.90530 5.99053 6.11269 6.13797 6.18057 6.22068 6.30067 6.54117 6.64956 6.92721 7.05193 7.70078 7.79798 7.82055 8.34193 8.51336 9.62143 10.19209 10.55272 11.55239 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.002105 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.632027 B =13295.674470 C =14325.498691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.129 4.129 5 C 0.120 3.880 6 N -0.361 5.361 7 C 0.091 3.909 8 C -0.090 4.090 9 C 0.612 3.388 10 O -0.530 6.530 11 N -0.596 5.596 12 C 0.106 3.894 13 C -0.136 4.136 14 C -0.121 4.121 15 C 0.132 3.868 16 H 0.079 0.921 17 C 0.146 3.854 18 N -0.727 5.727 19 C -0.232 4.232 20 H 0.069 0.931 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.283 1.283 26 H -0.292 1.292 27 N -0.202 5.202 28 N -0.069 5.069 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.204 0.796 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.016 0.984 48 H 0.036 0.964 49 H 0.384 0.616 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 24.560 -20.055 31.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.167 4.167 5 C -0.001 4.001 6 N -0.147 5.147 7 C -0.066 4.066 8 C -0.230 4.230 9 C 0.398 3.602 10 O -0.406 6.406 11 N -0.329 5.329 12 C -0.017 4.017 13 C -0.174 4.174 14 C -0.159 4.159 15 C 0.029 3.971 16 H 0.097 0.903 17 C 0.018 3.982 18 N -0.372 5.372 19 C -0.364 4.364 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.218 1.218 25 H -0.208 1.208 26 H -0.218 1.218 27 N -0.076 5.076 28 N -0.050 5.050 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.221 0.779 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.034 0.966 48 H 0.054 0.946 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.400 24.725 -20.401 32.356 hybrid contribution -1.421 -1.159 0.158 1.841 sum 2.979 23.566 -20.244 31.210 Atomic orbital electron populations 1.21970 0.94893 1.01969 1.02411 1.21066 0.96071 0.96722 0.97393 1.21823 1.01268 0.95331 1.02089 1.21975 1.03105 0.92254 0.99359 1.22188 1.00710 0.93227 0.83990 1.50519 1.07933 1.35810 1.20398 1.23377 1.00012 0.93370 0.89804 1.21492 0.89767 1.09905 1.01790 1.16348 0.84368 0.79217 0.80257 1.90856 1.17955 1.57036 1.74705 1.48238 1.09931 1.45908 1.28833 1.22422 0.81030 1.01157 0.97080 1.22841 1.00532 0.98581 0.95477 1.22680 0.94470 0.97819 1.00963 1.21855 0.97974 0.90529 0.86767 0.90296 1.20945 0.97823 0.87655 0.91777 1.42199 1.77319 1.14109 1.03583 1.19223 1.33702 0.90660 0.92790 0.91277 1.24714 1.02484 0.98688 0.95234 1.69655 1.54740 1.36686 0.97305 0.86176 0.78816 0.84278 0.76862 1.21784 1.20846 1.21824 1.74723 1.20160 1.06071 1.06655 1.81939 0.95680 1.19650 1.07690 0.92471 0.92317 0.92241 0.90608 0.92385 0.92330 0.92507 0.90884 0.89903 0.88387 0.87604 0.77919 0.89548 0.91291 0.90962 0.89997 0.89764 0.89875 0.96637 0.94629 0.78276 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 8.95 37.15 0.33 -0.15 16 2 C -0.09 -0.32 2.92 -90.63 -0.26 -0.59 16 3 C -0.15 -0.56 9.19 37.16 0.34 -0.21 16 4 C -0.13 -0.61 4.89 -26.73 -0.13 -0.74 16 5 C 0.12 0.59 6.30 -4.04 -0.03 0.57 16 6 N -0.36 -3.33 3.69 -61.06 -0.23 -3.55 16 7 C 0.09 0.96 11.27 -16.83 -0.19 0.77 16 8 C -0.09 -1.27 6.83 -83.55 -0.57 -1.84 16 9 C 0.61 10.53 7.58 -12.48 -0.09 10.44 16 10 O -0.53 -10.71 16.05 5.28 0.08 -10.63 16 11 N -0.60 -9.90 3.06 -164.24 -0.50 -10.40 16 12 C 0.11 1.43 5.95 -2.53 -0.02 1.41 16 13 C -0.14 -1.66 7.09 -24.58 -0.17 -1.84 16 14 C -0.12 -1.90 6.01 -24.89 -0.15 -2.05 16 15 C 0.13 2.43 2.94 -66.96 -0.20 2.24 16 16 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 17 C 0.15 3.32 5.64 -4.04 -0.02 3.30 16 18 N -0.73 -19.44 5.44 -59.91 -0.33 -19.77 16 19 C -0.23 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.91 13.06 55.49 0.72 -28.18 16 23 Si 0.91 23.22 29.55 -169.99 -5.02 18.19 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 N -0.20 -2.78 9.54 32.85 0.31 -2.46 16 28 N -0.07 -0.84 13.65 60.35 0.82 -0.02 16 29 H 0.06 0.14 6.57 -51.93 -0.34 -0.20 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 36 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 0.30 6.51 -51.93 -0.34 -0.04 16 40 H 0.20 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.09 1.11 6.47 -51.93 -0.34 0.77 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.08 1.38 7.79 -51.93 -0.40 0.98 16 47 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 48 H 0.04 0.89 6.93 -51.93 -0.36 0.53 16 49 H 0.38 10.49 7.40 -40.82 -0.30 10.19 16 50 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 404.31 15.07 6.09 6.09 Total: -1.00 -35.58 404.31 -7.83 -43.41 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.39 Total: 3.57 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.41 Total: 3.75 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: 0.81 Total: -64.39 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.58 -7.83 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270263165.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.103 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds