Wall clock time and date at job start Tue Mar 31 2020 20:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46828 * 2 1 4 4 C 1.52995 * 109.47189 * 120.00483 * 2 1 3 5 5 C 1.53005 * 109.47228 * 175.00017 * 4 2 1 6 6 N 1.46501 * 109.47256 * 179.97438 * 5 4 2 7 7 C 1.34809 * 126.58933 * 125.00150 * 6 5 4 8 8 C 1.36595 * 106.83843 * 180.02562 * 7 6 5 9 9 C 1.47527 * 125.77229 * 179.97438 * 8 7 6 10 10 O 1.21598 * 119.99857 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00193 * 179.97438 * 9 8 7 12 12 C 1.47426 * 125.64352 * 4.76517 * 11 9 8 13 13 C 1.54908 * 104.83040 * 204.16052 * 12 11 9 14 14 C 1.55160 * 101.58456 * 322.99380 * 13 12 11 15 15 C 1.47015 * 125.64801 * 184.80554 * 11 9 8 16 16 H 1.08998 * 109.88514 * 59.33694 * 15 11 9 17 17 C 1.52999 * 109.88472 * 298.32622 * 15 11 9 18 18 N 1.46502 * 109.47031 * 175.96765 * 17 15 11 19 19 C 1.36938 * 119.99644 * 174.94142 * 18 17 15 20 20 H 1.08004 * 120.00082 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99933 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99956 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00274 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47473 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47166 * 300.00281 * 23 21 19 26 26 H 1.48503 * 109.47024 * 59.99915 * 23 21 19 27 27 N 1.34403 * 108.45766 * 0.23536 * 8 7 6 28 28 N 1.28760 * 109.52147 * 359.59588 * 27 8 7 29 29 H 1.08993 * 109.46926 * 299.99332 * 1 2 3 30 30 H 1.08997 * 109.47333 * 59.99790 * 1 2 3 31 31 H 1.09004 * 109.46709 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47066 * 240.00146 * 2 1 3 33 33 H 1.08997 * 109.47335 * 300.00209 * 3 2 1 34 34 H 1.08999 * 109.47230 * 60.00715 * 3 2 1 35 35 H 1.09004 * 109.46797 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47583 * 55.00194 * 4 2 1 37 37 H 1.09000 * 109.47055 * 294.99861 * 4 2 1 38 38 H 1.09000 * 109.46694 * 59.99633 * 5 4 2 39 39 H 1.09000 * 109.46975 * 299.99893 * 5 4 2 40 40 H 1.08007 * 126.58477 * 0.05714 * 7 6 5 41 41 H 1.09000 * 110.37080 * 323.00330 * 12 11 9 42 42 H 1.09005 * 110.36654 * 85.21566 * 12 11 9 43 43 H 1.08996 * 111.00257 * 81.06589 * 13 12 11 44 44 H 1.09000 * 111.00472 * 204.92011 * 13 12 11 45 45 H 1.08997 * 110.71821 * 277.14372 * 14 13 12 46 46 H 1.08996 * 110.72166 * 153.86393 * 14 13 12 47 47 H 1.08998 * 109.47310 * 55.96262 * 17 15 11 48 48 H 1.09010 * 109.46985 * 295.96211 * 17 15 11 49 49 H 0.96993 * 120.00026 * 354.93454 * 18 17 15 50 50 H 0.97000 * 119.99695 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1879 6 7 4.0533 -1.5213 2.3843 7 6 4.8315 -2.6217 2.4158 8 6 5.0420 -2.9198 3.7321 9 6 5.8405 -4.0501 4.2433 10 8 6.3798 -4.8141 3.4661 11 7 5.9722 -4.2358 5.5717 12 6 5.2961 -3.4504 6.6202 13 6 6.1978 -3.5995 7.8709 14 6 6.6704 -5.0717 7.7406 15 6 6.8146 -5.2546 6.2150 16 1 7.8546 -5.1163 5.9195 17 6 6.3407 -6.6523 5.8114 18 7 7.2435 -7.6568 6.3790 19 6 6.9606 -8.9892 6.2379 20 1 6.0717 -9.2995 5.7085 21 6 7.8162 -9.9411 6.7751 22 7 8.8997 -9.5630 7.4197 23 14 7.4308 -11.7586 6.5821 24 1 8.4916 -12.5624 7.2407 25 1 6.1204 -12.0566 7.2141 26 1 7.3734 -12.1018 5.1384 27 7 4.3939 -2.0127 4.4828 28 7 3.8009 -1.1647 3.7165 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6055 -1.7199 1.2950 37 1 1.7517 -0.1584 2.1369 38 1 3.9994 0.1675 1.1420 39 1 3.8532 -1.3940 0.3001 40 1 5.2153 -3.1633 1.5638 41 1 5.2270 -2.4035 6.3249 42 1 4.3030 -3.8549 6.8162 43 1 7.0430 -2.9127 7.8272 44 1 5.6241 -3.4529 8.7860 45 1 5.9211 -5.7541 8.1417 46 1 7.6294 -5.2144 8.2385 47 1 6.3408 -6.7362 4.7247 48 1 5.3312 -6.8166 6.1885 49 1 8.0416 -7.3782 6.8545 50 1 9.1001 -8.6192 7.5197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277940224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:45 Heat of formation + Delta-G solvation = 67.449921 kcal Electronic energy + Delta-G solvation = -28718.248252 eV Core-core repulsion = 24782.845212 eV Total energy + Delta-G solvation = -3935.403040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.41312 -39.78990 -37.78799 -37.26592 -34.80574 -34.51197 -31.86794 -31.23504 -31.06065 -29.71752 -28.34460 -27.76844 -25.09912 -24.98576 -24.03996 -22.54915 -22.14468 -21.88690 -20.80232 -20.46462 -19.23852 -17.74575 -17.10020 -16.71484 -16.38139 -16.27640 -15.58999 -15.27278 -14.96976 -14.62872 -14.45388 -14.20722 -14.09494 -13.66057 -13.59622 -13.43389 -13.28821 -13.01451 -12.88122 -12.65630 -12.53312 -12.39352 -12.14907 -11.96630 -11.70689 -11.55560 -11.51414 -11.38562 -11.23546 -10.75242 -10.70958 -10.55562 -10.51991 -10.45833 -10.38008 -9.94236 -9.84278 -9.44939 -9.12401 -8.75570 -8.36894 -6.88197 -6.00596 -2.98829 0.93295 1.62836 1.73609 3.04369 3.35443 3.58188 3.62581 3.79578 3.81783 4.02238 4.09232 4.25917 4.32316 4.48143 4.57643 4.70125 4.74713 4.75404 4.79716 4.96303 4.99022 5.02259 5.07978 5.14797 5.21593 5.28580 5.35549 5.35761 5.45609 5.50073 5.59450 5.64204 5.69030 5.70890 5.75922 5.84109 5.96401 6.00427 6.05535 6.09949 6.16441 6.21146 6.45029 6.57520 6.84049 7.04761 7.64210 7.76936 7.91471 8.29092 8.85648 9.33586 10.19658 10.35293 11.48266 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002106 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.770571 B =13294.982023 C =14230.987925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.154 4.154 4 C -0.130 4.130 5 C 0.119 3.881 6 N -0.361 5.361 7 C 0.091 3.909 8 C -0.090 4.090 9 C 0.612 3.388 10 O -0.529 6.529 11 N -0.596 5.596 12 C 0.098 3.902 13 C -0.135 4.135 14 C -0.121 4.121 15 C 0.131 3.869 16 H 0.075 0.925 17 C 0.150 3.850 18 N -0.739 5.739 19 C -0.324 4.324 20 H 0.063 0.937 21 C -0.048 4.048 22 N -0.946 5.946 23 Si 1.081 2.919 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.296 1.296 27 N -0.204 5.204 28 N -0.068 5.068 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.205 0.795 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.036 0.964 48 H 0.022 0.978 49 H 0.366 0.634 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.662 25.631 -13.145 32.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.211 4.211 4 C -0.168 4.168 5 C -0.001 4.001 6 N -0.146 5.146 7 C -0.065 4.065 8 C -0.229 4.229 9 C 0.397 3.603 10 O -0.404 6.404 11 N -0.329 5.329 12 C -0.025 4.025 13 C -0.173 4.173 14 C -0.159 4.159 15 C 0.028 3.972 16 H 0.093 0.907 17 C 0.022 3.978 18 N -0.385 5.385 19 C -0.455 4.455 20 H 0.081 0.919 21 C -0.245 4.245 22 N -0.592 5.592 23 Si 0.912 3.088 24 H -0.211 1.211 25 H -0.224 1.224 26 H -0.223 1.223 27 N -0.078 5.078 28 N -0.048 5.048 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.221 0.779 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.054 0.946 48 H 0.039 0.961 49 H 0.199 0.801 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.775 24.627 -12.533 31.335 hybrid contribution 0.039 1.030 -1.071 1.486 sum -14.737 25.657 -13.604 32.565 Atomic orbital electron populations 1.21826 0.94436 1.02113 1.02170 1.21064 0.96528 0.96387 0.97235 1.21953 1.01009 0.95762 1.02388 1.21983 0.92395 1.02409 0.99989 1.22199 0.96544 0.98561 0.82834 1.50521 1.34883 1.20240 1.08937 1.23384 0.93746 0.89304 1.00097 1.21472 1.09134 1.01854 0.90463 1.16374 0.80025 0.82639 0.81221 1.90862 1.48583 1.45318 1.55643 1.48219 1.45983 1.34233 1.04456 1.22565 0.95635 0.97458 0.86803 1.22823 0.99634 0.97311 0.97566 1.22670 1.03101 0.95915 0.94182 1.21866 0.94378 0.88703 0.92241 0.90657 1.20930 0.93402 0.85877 0.97569 1.42206 1.26583 1.02337 1.67423 1.20018 1.08569 0.83400 1.33492 0.91904 1.25753 0.95259 1.04797 0.98688 1.70880 1.26516 1.17262 1.44575 0.83229 0.75061 0.74908 0.75612 1.21073 1.22369 1.22339 1.74674 1.05631 1.01178 1.26271 1.81943 1.20879 1.19310 0.82705 0.92390 0.92305 0.92477 0.90724 0.92311 0.92216 0.92521 0.90851 0.89867 0.88196 0.87720 0.77870 0.88483 0.91503 0.90916 0.89976 0.89902 0.90020 0.94584 0.96052 0.80098 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.19 37.16 0.34 -0.24 16 2 C -0.09 -0.33 2.92 -90.62 -0.26 -0.59 16 3 C -0.15 -0.50 8.95 37.16 0.33 -0.17 16 4 C -0.13 -0.63 4.89 -26.73 -0.13 -0.76 16 5 C 0.12 0.57 6.29 -4.04 -0.03 0.55 16 6 N -0.36 -3.26 3.69 -61.06 -0.23 -3.48 16 7 C 0.09 0.95 11.27 -16.84 -0.19 0.76 16 8 C -0.09 -1.25 6.84 -83.55 -0.57 -1.82 16 9 C 0.61 10.51 7.67 -12.47 -0.10 10.42 16 10 O -0.53 -10.72 15.67 5.28 0.08 -10.64 16 11 N -0.60 -9.92 3.06 -164.23 -0.50 -10.42 16 12 C 0.10 1.33 6.29 -2.53 -0.02 1.31 16 13 C -0.14 -1.66 7.08 -24.58 -0.17 -1.83 16 14 C -0.12 -1.90 6.18 -24.89 -0.15 -2.05 16 15 C 0.13 2.43 2.96 -66.95 -0.20 2.23 16 16 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 17 C 0.15 3.46 5.64 -4.04 -0.02 3.44 16 18 N -0.74 -19.88 5.40 -59.90 -0.32 -20.20 16 19 C -0.32 -9.68 9.99 -15.06 -0.15 -9.83 16 20 H 0.06 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.05 -1.45 5.50 -17.43 -0.10 -1.55 16 22 N -0.95 -30.12 13.70 55.49 0.76 -29.36 16 23 Si 1.08 27.00 29.92 -169.99 -5.09 21.91 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.30 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 27 N -0.20 -2.76 9.31 32.85 0.31 -2.46 16 28 N -0.07 -0.82 13.65 60.35 0.82 0.01 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.15 6.57 -51.93 -0.34 -0.19 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.38 6.57 -51.93 -0.34 0.04 16 39 H 0.10 0.26 8.08 -51.93 -0.42 -0.16 16 40 H 0.20 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.10 1.26 5.86 -51.93 -0.30 0.95 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.41 7.78 -51.93 -0.40 1.00 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.04 0.92 6.58 -51.93 -0.34 0.58 16 48 H 0.02 0.51 8.05 -51.92 -0.42 0.09 16 49 H 0.37 9.84 6.41 -40.82 -0.26 9.58 16 50 H 0.25 7.94 6.77 -40.82 -0.28 7.66 16 LS Contribution 401.79 15.07 6.05 6.05 Total: -1.00 -36.86 401.79 -7.76 -44.62 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.23 Total: 4.09 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.41 Total: -0.13 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: 0.84 Total: -65.91 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 27.00 SS G_CDS: -5.09 Total: 21.91 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.86 -7.76 -44.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.072 kcal (2) G-P(sol) polarization free energy of solvation -36.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds