Wall clock time and date at job start Tue Mar 31 2020 20:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46828 * 2 1 4 4 C 1.52995 * 109.47189 * 120.00483 * 2 1 3 5 5 C 1.53005 * 109.47228 * 175.00017 * 4 2 1 6 6 N 1.46501 * 109.47256 * 179.97438 * 5 4 2 7 7 C 1.34809 * 126.58933 * 125.00150 * 6 5 4 8 8 C 1.36595 * 106.83843 * 180.02562 * 7 6 5 9 9 C 1.47527 * 125.77229 * 179.97438 * 8 7 6 10 10 O 1.21598 * 119.99857 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00193 * 179.97438 * 9 8 7 12 12 C 1.47426 * 125.64352 * 4.76517 * 11 9 8 13 13 C 1.54908 * 104.83040 * 204.16052 * 12 11 9 14 14 C 1.55160 * 101.58456 * 322.99380 * 13 12 11 15 15 C 1.47015 * 125.64801 * 184.80554 * 11 9 8 16 16 H 1.08998 * 109.88514 * 59.33694 * 15 11 9 17 17 C 1.52999 * 109.88472 * 298.32622 * 15 11 9 18 18 N 1.46502 * 109.47031 * 175.96765 * 17 15 11 19 19 C 1.36938 * 119.99644 * 174.94142 * 18 17 15 20 20 H 1.08004 * 120.00082 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99933 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99956 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00274 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47473 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47166 * 300.00281 * 23 21 19 26 26 H 1.48503 * 109.47024 * 59.99915 * 23 21 19 27 27 N 1.34403 * 108.45766 * 0.23536 * 8 7 6 28 28 N 1.28760 * 109.52147 * 359.59588 * 27 8 7 29 29 H 1.08993 * 109.46926 * 299.99332 * 1 2 3 30 30 H 1.08997 * 109.47333 * 59.99790 * 1 2 3 31 31 H 1.09004 * 109.46709 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47066 * 240.00146 * 2 1 3 33 33 H 1.08997 * 109.47335 * 300.00209 * 3 2 1 34 34 H 1.08999 * 109.47230 * 60.00715 * 3 2 1 35 35 H 1.09004 * 109.46797 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47583 * 55.00194 * 4 2 1 37 37 H 1.09000 * 109.47055 * 294.99861 * 4 2 1 38 38 H 1.09000 * 109.46694 * 59.99633 * 5 4 2 39 39 H 1.09000 * 109.46975 * 299.99893 * 5 4 2 40 40 H 1.08007 * 126.58477 * 0.05714 * 7 6 5 41 41 H 1.09000 * 110.37080 * 323.00330 * 12 11 9 42 42 H 1.09005 * 110.36654 * 85.21566 * 12 11 9 43 43 H 1.08996 * 111.00257 * 81.06589 * 13 12 11 44 44 H 1.09000 * 111.00472 * 204.92011 * 13 12 11 45 45 H 1.08997 * 110.71821 * 277.14372 * 14 13 12 46 46 H 1.08996 * 110.72166 * 153.86393 * 14 13 12 47 47 H 1.08998 * 109.47310 * 55.96262 * 17 15 11 48 48 H 1.09010 * 109.46985 * 295.96211 * 17 15 11 49 49 H 0.96993 * 120.00026 * 354.93454 * 18 17 15 50 50 H 0.97000 * 119.99695 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1879 6 7 4.0533 -1.5213 2.3843 7 6 4.8315 -2.6217 2.4158 8 6 5.0420 -2.9198 3.7321 9 6 5.8405 -4.0501 4.2433 10 8 6.3798 -4.8141 3.4661 11 7 5.9722 -4.2358 5.5717 12 6 5.2961 -3.4504 6.6202 13 6 6.1978 -3.5995 7.8709 14 6 6.6704 -5.0717 7.7406 15 6 6.8146 -5.2546 6.2150 16 1 7.8546 -5.1163 5.9195 17 6 6.3407 -6.6523 5.8114 18 7 7.2435 -7.6568 6.3790 19 6 6.9606 -8.9892 6.2379 20 1 6.0717 -9.2995 5.7085 21 6 7.8162 -9.9411 6.7751 22 7 8.8997 -9.5630 7.4197 23 14 7.4308 -11.7586 6.5821 24 1 8.4916 -12.5624 7.2407 25 1 6.1204 -12.0566 7.2141 26 1 7.3734 -12.1018 5.1384 27 7 4.3939 -2.0127 4.4828 28 7 3.8009 -1.1647 3.7165 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6055 -1.7199 1.2950 37 1 1.7517 -0.1584 2.1369 38 1 3.9994 0.1675 1.1420 39 1 3.8532 -1.3940 0.3001 40 1 5.2153 -3.1633 1.5638 41 1 5.2270 -2.4035 6.3249 42 1 4.3030 -3.8549 6.8162 43 1 7.0430 -2.9127 7.8272 44 1 5.6241 -3.4529 8.7860 45 1 5.9211 -5.7541 8.1417 46 1 7.6294 -5.2144 8.2385 47 1 6.3408 -6.7362 4.7247 48 1 5.3312 -6.8166 6.1885 49 1 8.0416 -7.3782 6.8545 50 1 9.1001 -8.6192 7.5197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277940224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:43 Heat of formation + Delta-G solvation = 42.926981 kcal Electronic energy + Delta-G solvation = -28719.311647 eV Core-core repulsion = 24782.845212 eV Total energy + Delta-G solvation = -3936.466435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.31677 -41.12070 -38.70152 -38.15642 -36.75823 -35.29977 -33.58105 -32.74426 -31.96601 -30.56345 -29.88703 -28.03814 -26.58685 -25.76727 -25.53452 -24.39076 -23.17247 -22.80565 -21.92949 -20.96108 -20.47589 -19.43041 -18.58500 -17.81706 -17.43587 -17.23190 -16.77138 -16.23498 -15.91359 -15.77023 -15.69069 -15.47212 -15.16910 -15.03927 -14.96362 -14.74874 -14.27790 -14.00784 -13.91457 -13.66441 -13.38130 -13.20024 -13.09566 -12.87668 -12.75585 -12.69439 -12.59237 -12.31533 -12.07617 -11.98678 -11.88317 -11.82815 -11.71684 -11.66627 -11.54465 -11.34768 -11.25055 -11.18600 -10.92177 -10.41755 -9.74889 -9.14862 -8.42970 -5.36660 0.08576 0.54752 1.03082 1.56982 1.67884 1.79331 1.85216 2.12769 2.70373 3.03417 3.24658 3.36765 3.55205 3.58426 3.72375 3.76951 3.83047 3.89456 3.94138 3.95306 3.99322 4.20527 4.23966 4.24928 4.30648 4.40722 4.43537 4.52812 4.71312 4.72545 4.78736 4.84685 4.86592 4.94195 4.95137 4.98701 5.03466 5.05443 5.06608 5.07606 5.28341 5.28976 5.36553 5.38790 5.43749 5.48904 5.53926 6.37957 6.47301 6.76398 7.00617 7.06577 7.94331 8.07149 9.08970 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002106 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.770571 B =13294.982023 C =14230.987925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.154 4.154 4 C -0.124 4.124 5 C 0.109 3.891 6 N -0.345 5.345 7 C 0.110 3.890 8 C -0.119 4.119 9 C 0.607 3.393 10 O -0.571 6.571 11 N -0.599 5.599 12 C 0.099 3.901 13 C -0.118 4.118 14 C -0.117 4.117 15 C 0.138 3.862 16 H 0.060 0.940 17 C 0.159 3.841 18 N -0.746 5.746 19 C -0.338 4.338 20 H 0.059 0.941 21 C -0.100 4.100 22 N -0.969 5.969 23 Si 1.131 2.869 24 H -0.287 1.287 25 H -0.276 1.276 26 H -0.281 1.281 27 N -0.216 5.216 28 N -0.080 5.080 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.009 0.991 48 H 0.016 0.984 49 H 0.364 0.636 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.659 26.939 -14.094 34.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.211 4.211 4 C -0.162 4.162 5 C -0.009 4.009 6 N -0.129 5.129 7 C -0.048 4.048 8 C -0.258 4.258 9 C 0.395 3.605 10 O -0.450 6.450 11 N -0.331 5.331 12 C -0.023 4.023 13 C -0.156 4.156 14 C -0.155 4.155 15 C 0.034 3.966 16 H 0.079 0.921 17 C 0.031 3.969 18 N -0.392 5.392 19 C -0.470 4.470 20 H 0.077 0.923 21 C -0.291 4.291 22 N -0.616 5.616 23 Si 0.954 3.046 24 H -0.213 1.213 25 H -0.202 1.202 26 H -0.207 1.207 27 N -0.090 5.090 28 N -0.060 5.060 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.135 0.865 39 H 0.155 0.845 40 H 0.248 0.752 41 H 0.126 0.874 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.129 0.871 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.027 0.973 48 H 0.034 0.966 49 H 0.196 0.804 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.827 26.019 -13.484 33.306 hybrid contribution 0.270 0.721 -0.897 1.183 sum -15.557 26.740 -14.381 34.115 Atomic orbital electron populations 1.21847 0.94936 1.01845 1.02150 1.21030 0.96066 0.96552 0.96937 1.21961 1.01574 0.95407 1.02207 1.21916 0.92438 1.01780 1.00098 1.22695 0.96401 0.99705 0.82113 1.50792 1.33537 1.19506 1.09066 1.23754 0.92480 0.88983 0.99619 1.21157 1.10750 1.01942 0.91939 1.16866 0.79654 0.82983 0.81009 1.90824 1.50464 1.47057 1.56611 1.48343 1.45802 1.33855 1.05122 1.22730 0.95672 0.97501 0.86396 1.22831 1.00058 0.94614 0.98118 1.22591 1.02970 0.98338 0.91572 1.21623 0.93750 0.86745 0.94451 0.92145 1.20877 0.92571 0.87927 0.95539 1.42305 1.27074 1.02329 1.67460 1.20329 1.08474 0.84934 1.33237 0.92338 1.27293 0.94673 1.09100 0.98072 1.70988 1.27735 1.16796 1.46110 0.82609 0.75620 0.69884 0.76451 1.21277 1.20173 1.20729 1.74621 1.05978 1.01372 1.27039 1.81866 1.20912 1.19169 0.84044 0.93087 0.91691 0.92877 0.89341 0.91902 0.93050 0.91614 0.91787 0.91434 0.86519 0.84452 0.75164 0.87429 0.91335 0.89528 0.87075 0.91254 0.89845 0.97338 0.96608 0.80372 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.19 71.98 0.66 -0.33 16 2 C -0.09 -0.43 2.92 -10.80 -0.03 -0.46 16 3 C -0.15 -0.68 8.95 71.98 0.64 -0.04 16 4 C -0.12 -0.98 4.89 30.59 0.15 -0.83 16 5 C 0.11 0.73 6.29 86.38 0.54 1.27 16 6 N -0.34 -5.49 3.69 -347.09 -1.28 -6.77 16 7 C 0.11 2.10 11.27 83.85 0.95 3.05 16 8 C -0.12 -3.23 6.84 40.82 0.28 -2.96 16 9 C 0.61 21.26 7.67 86.69 0.66 21.92 16 10 O -0.57 -23.97 15.67 -4.02 -0.06 -24.04 16 11 N -0.60 -20.18 3.06 -791.76 -2.43 -22.61 16 12 C 0.10 2.57 6.29 86.85 0.55 3.12 16 13 C -0.12 -2.68 7.08 31.99 0.23 -2.45 16 14 C -0.12 -3.65 6.18 31.79 0.20 -3.45 16 15 C 0.14 5.27 2.96 45.35 0.13 5.41 16 16 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 17 C 0.16 7.61 5.64 86.38 0.49 8.09 16 18 N -0.75 -41.44 5.40 -343.44 -1.85 -43.29 16 19 C -0.34 -20.62 9.99 84.03 0.84 -19.78 16 20 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 21 C -0.10 -6.09 5.50 84.86 0.47 -5.62 16 22 N -0.97 -62.42 13.70 21.65 0.30 -62.13 16 23 Si 1.13 54.20 29.92 68.60 2.05 56.25 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 N -0.22 -5.68 9.31 -49.99 -0.47 -6.14 16 28 N -0.08 -1.80 13.65 37.02 0.51 -1.29 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.06 0.17 6.57 -2.38 -0.02 0.16 16 36 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.12 0.49 6.57 -2.39 -0.02 0.47 16 39 H 0.14 0.10 8.08 -2.39 -0.02 0.08 16 40 H 0.23 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.11 2.64 5.86 -2.39 -0.01 2.63 16 42 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 2.36 7.78 -2.39 -0.02 2.34 16 46 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.01 0.47 6.58 -2.39 -0.02 0.45 16 48 H 0.02 0.78 8.05 -2.38 -0.02 0.76 16 49 H 0.36 20.28 6.41 -92.71 -0.59 19.69 16 50 H 0.24 15.67 6.77 -92.71 -0.63 15.05 16 Total: -1.00 -81.95 401.79 4.00 -77.95 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.48 Total: 25.12 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.75 Total: 6.95 kcal Atomic # 7 Polarization: -137.00 SS G_CDS: -5.23 Total: -142.23 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 54.20 SS G_CDS: 2.05 Total: 56.25 kcal Total: -81.95 4.00 -77.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.874 kcal (2) G-P(sol) polarization free energy of solvation -81.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds