Wall clock time and date at job start Tue Mar 31 2020 19:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47152 * 2 1 4 4 N 1.30446 * 125.99006 * 270.01720 * 3 2 1 5 5 N 1.39935 * 108.90003 * 179.72464 * 4 3 2 6 6 H 0.96998 * 125.75472 * 180.27595 * 5 4 3 7 7 C 1.34258 * 108.49136 * 0.43452 * 5 4 3 8 8 C 1.38054 * 107.41520 * 359.57809 * 7 5 4 9 9 C 1.47421 * 126.41174 * 180.26178 * 8 7 5 10 10 O 1.21602 * 119.99937 * 179.97438 * 9 8 7 11 11 N 1.34779 * 120.00515 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00176 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46804 * 179.97438 * 12 11 9 14 14 N 1.46897 * 109.46705 * 180.02562 * 13 12 11 15 15 C 1.46846 * 111.00276 * 45.79297 * 14 13 12 16 16 C 1.53042 * 109.52600 * 185.84037 * 15 14 13 17 17 C 1.53118 * 109.27445 * 300.81866 * 16 15 14 18 18 N 1.46502 * 109.57660 * 177.59203 * 17 16 15 19 19 C 1.36933 * 120.00217 * 85.28137 * 18 17 16 20 20 H 1.08000 * 119.99918 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00467 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00772 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 119.99593 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47037 * 90.00312 * 23 21 19 25 25 H 1.48505 * 109.47084 * 210.00108 * 23 21 19 26 26 H 1.48496 * 109.47227 * 329.99947 * 23 21 19 27 27 C 1.53117 * 109.16204 * 57.65367 * 17 16 15 28 28 C 1.46851 * 111.00167 * 170.00243 * 14 13 12 29 29 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47436 * 300.00556 * 1 2 3 31 31 H 1.09003 * 109.46561 * 60.00454 * 1 2 3 32 32 H 1.08998 * 109.47436 * 239.99444 * 2 1 3 33 33 H 1.09007 * 109.47001 * 119.99709 * 2 1 3 34 34 H 1.08002 * 126.29527 * 179.84921 * 7 5 4 35 35 H 0.97000 * 119.99526 * 359.97438 * 11 9 8 36 36 H 1.08991 * 109.46974 * 300.00073 * 12 11 9 37 37 H 1.09000 * 109.47030 * 60.00136 * 12 11 9 38 38 H 1.09000 * 109.46993 * 300.00196 * 13 12 11 39 39 H 1.09000 * 109.46880 * 60.00455 * 13 12 11 40 40 H 1.09003 * 109.46273 * 305.85711 * 15 14 13 41 41 H 1.08999 * 109.46444 * 65.82326 * 15 14 13 42 42 H 1.08998 * 109.50345 * 180.88448 * 16 15 14 43 43 H 1.08996 * 109.50210 * 60.75842 * 16 15 14 44 44 H 1.08998 * 109.52388 * 297.75198 * 17 16 15 45 45 H 0.96998 * 119.99799 * 265.29296 * 18 17 16 46 46 H 0.96993 * 120.00524 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.50787 * 182.39895 * 27 17 16 48 48 H 1.09002 * 109.50447 * 62.28640 * 27 17 16 49 49 H 1.09000 * 109.45715 * 294.17941 * 28 14 13 50 50 H 1.08996 * 109.45889 * 54.15278 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2875 2.1436 -1.0555 5 7 2.7275 3.4067 -0.6442 6 1 2.9802 4.1374 -1.2301 7 6 2.7443 3.4357 0.6979 8 6 2.3090 2.2035 1.1433 9 6 2.1609 1.7833 2.5485 10 8 1.7649 0.6636 2.8098 11 7 2.4644 2.6400 3.5438 12 6 2.3166 2.2225 4.9402 13 6 2.7248 3.3731 5.8624 14 7 2.5772 2.9542 7.2626 15 6 3.1461 1.6172 7.4748 16 6 2.8465 1.1544 8.9025 17 6 3.4528 2.1508 9.8945 18 7 3.1208 1.7451 11.2625 19 6 3.9040 0.8306 11.9146 20 1 4.7667 0.4086 11.4206 21 6 3.5891 0.4457 13.2106 22 7 4.3422 -0.4329 13.8377 23 14 2.0965 1.1751 14.0649 24 1 0.9068 0.3299 13.7900 25 1 2.3398 1.2261 15.5289 26 1 1.8563 2.5488 13.5548 27 6 2.8801 3.5442 9.6208 28 6 3.1787 3.9377 8.1724 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0394 4.2709 1.3157 35 1 2.7806 3.5330 3.3354 36 1 1.2776 1.9544 5.1312 37 1 2.9554 1.3601 5.1312 38 1 3.7640 3.6408 5.6712 39 1 2.0863 4.2357 5.6716 40 1 2.7036 0.9175 6.7658 41 1 4.2250 1.6534 7.3237 42 1 3.2824 0.1687 9.0645 43 1 1.7677 1.1047 9.0500 44 1 4.5358 2.1720 9.7736 45 1 2.3460 2.1242 11.7063 46 1 4.1219 -0.7021 14.7431 47 1 3.3398 4.2658 10.2961 48 1 1.8018 3.5321 9.7796 49 1 4.2574 3.9630 8.0179 50 1 2.7596 4.9233 7.9701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279438903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:10 Heat of formation + Delta-G solvation = 48.380060 kcal Electronic energy + Delta-G solvation = -28344.905254 eV Core-core repulsion = 24408.675283 eV Total energy + Delta-G solvation = -3936.229972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.88379 -39.60743 -38.80417 -35.91770 -34.77676 -34.25411 -32.37231 -31.19363 -30.70574 -30.55811 -30.05418 -27.79158 -24.65532 -24.33992 -23.41738 -23.22337 -21.94819 -21.03523 -20.71685 -19.88319 -19.49505 -18.82735 -17.50738 -16.85721 -16.30792 -15.95296 -15.43718 -15.37528 -14.99577 -14.71230 -14.57929 -14.42085 -14.24862 -13.96822 -13.94771 -13.36067 -13.29496 -13.09378 -13.06802 -12.64962 -12.47296 -11.99192 -11.79900 -11.74125 -11.59111 -11.50265 -11.48088 -11.11612 -10.93739 -10.84920 -10.60128 -10.27721 -10.15128 -10.07854 -9.98435 -9.75999 -9.54922 -9.42231 -9.13960 -8.85947 -8.29031 -7.22752 -5.73970 -3.09101 1.02363 1.76021 2.19689 2.87885 3.16912 3.40501 3.43938 3.48149 3.97501 4.03648 4.13118 4.55691 4.62252 4.67162 4.83985 4.87566 4.93524 5.08701 5.13796 5.17276 5.19620 5.24471 5.32419 5.37296 5.48808 5.59757 5.60711 5.71203 5.72009 5.78078 5.81752 5.84212 5.95983 5.96793 6.06858 6.09535 6.15356 6.20393 6.25892 6.41310 6.58065 6.59192 6.79928 7.01278 7.04261 7.14882 7.19695 7.28943 8.02657 8.04462 8.45386 9.24330 9.97116 10.17527 11.44445 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024088 B = 0.001829 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.139526 B =15305.344978 C =15941.630614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 C 0.140 3.860 4 N -0.298 5.298 5 N -0.461 5.461 6 H 0.444 0.556 7 C 0.103 3.897 8 C -0.285 4.285 9 C 0.592 3.408 10 O -0.533 6.533 11 N -0.729 5.729 12 C 0.116 3.884 13 C 0.046 3.954 14 N -0.532 5.532 15 C 0.049 3.951 16 C -0.132 4.132 17 C 0.182 3.818 18 N -0.749 5.749 19 C -0.241 4.241 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.125 4.125 28 C 0.065 3.935 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.186 0.814 35 H 0.394 0.606 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.033 0.967 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 12.623 -30.895 33.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C -0.028 4.028 4 N -0.120 5.120 5 N -0.165 5.165 6 H 0.289 0.711 7 C -0.050 4.050 8 C -0.300 4.300 9 C 0.379 3.621 10 O -0.410 6.410 11 N -0.381 5.381 12 C -0.007 4.007 13 C -0.083 4.083 14 N -0.258 5.258 15 C -0.079 4.079 16 C -0.173 4.173 17 C 0.072 3.928 18 N -0.390 5.390 19 C -0.371 4.371 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.583 5.583 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.203 1.203 27 C -0.163 4.163 28 C -0.064 4.064 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.202 0.798 35 H 0.228 0.772 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.051 0.949 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.587 11.638 -31.755 34.130 hybrid contribution 0.233 1.577 1.049 1.908 sum -4.355 13.214 -30.706 33.711 Atomic orbital electron populations 1.21619 0.93817 1.02308 1.01943 1.20162 0.96653 0.87882 1.04325 1.22532 0.94600 0.97070 0.88576 1.77209 1.21950 0.90444 1.22424 1.46128 1.51698 1.13260 1.05450 0.71115 1.23152 0.97265 0.98755 0.85801 1.20317 1.19456 0.95598 0.94625 1.17190 0.76939 0.84555 0.83367 1.90782 1.46201 1.19901 1.84110 1.45761 1.69182 1.16890 1.06303 1.21544 1.03087 0.97403 0.78693 1.22217 0.99636 0.97516 0.88896 1.61990 1.58331 1.03148 1.02317 1.22320 0.96828 0.89532 0.99218 1.22274 1.01988 1.00717 0.92292 1.20214 0.97068 0.90586 0.84906 1.42777 1.32693 1.51677 1.11894 1.19073 1.06895 1.14981 0.96175 0.89311 1.24676 0.98580 0.99106 0.96928 1.69700 1.39958 1.35481 1.13172 0.86535 0.83812 0.79004 0.79093 1.21087 1.21863 1.20332 1.21897 1.01927 0.98426 0.94079 1.22031 0.96611 0.94707 0.93015 0.91700 0.92136 0.93013 0.90524 0.87907 0.79757 0.77229 0.90247 0.90665 0.94519 0.90382 0.90554 0.95053 0.91180 0.91740 0.93226 0.80639 0.93119 0.91424 0.91407 0.94853 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.47 5.97 -27.89 -0.17 -0.63 16 3 C 0.14 1.37 6.52 -82.02 -0.53 0.83 16 4 N -0.30 -2.72 12.63 33.89 0.43 -2.29 16 5 N -0.46 -2.41 7.29 30.85 0.22 -2.19 16 6 H 0.44 0.71 8.96 -182.72 -1.64 -0.92 16 7 C 0.10 0.49 11.52 -16.56 -0.19 0.30 16 8 C -0.28 -2.47 6.13 -105.07 -0.64 -3.11 16 9 C 0.59 6.16 7.81 -12.52 -0.10 6.07 16 10 O -0.53 -7.48 14.92 5.28 0.08 -7.40 16 11 N -0.73 -5.69 5.54 -61.38 -0.34 -6.03 16 12 C 0.12 1.12 4.93 -4.04 -0.02 1.10 16 13 C 0.05 0.41 5.39 -3.82 -0.02 0.39 16 14 N -0.53 -6.46 4.81 -234.67 -1.13 -7.59 16 15 C 0.05 0.67 4.85 -3.83 -0.02 0.65 16 16 C -0.13 -2.30 5.68 -26.65 -0.15 -2.45 16 17 C 0.18 3.45 2.84 -67.81 -0.19 3.25 16 18 N -0.75 -17.67 4.93 -53.31 -0.26 -17.94 16 19 C -0.24 -6.80 10.42 -15.06 -0.16 -6.96 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 22 N -0.94 -29.51 13.97 55.49 0.78 -28.74 16 23 Si 0.89 22.28 27.74 -169.99 -4.71 17.57 16 24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 27 C -0.12 -1.91 5.57 -26.65 -0.15 -2.06 16 28 C 0.06 0.79 5.42 -3.84 -0.02 0.77 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.10 1.08 6.55 -51.92 -0.34 0.74 16 34 H 0.19 0.04 7.46 -52.49 -0.39 -0.35 16 35 H 0.39 1.71 7.40 -40.82 -0.30 1.41 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.84 6.21 -51.93 -0.32 0.52 16 38 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.99 5.81 -51.93 -0.30 0.69 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 45 H 0.36 8.43 5.66 -40.82 -0.23 8.20 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -36.11 397.39 -10.49 -46.60 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -9.45 Total: 4.69 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.09 Total: -2.67 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -0.30 Total: -64.77 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.08 Total: -7.40 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.11 -10.49 -46.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279438903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.980 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds