Wall clock time and date at job start Tue Mar 31 2020 19:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47152 * 2 1 4 4 N 1.30446 * 125.99006 * 270.01720 * 3 2 1 5 5 N 1.39935 * 108.90003 * 179.72464 * 4 3 2 6 6 H 0.96998 * 125.75472 * 180.27595 * 5 4 3 7 7 C 1.34258 * 108.49136 * 0.43452 * 5 4 3 8 8 C 1.38054 * 107.41520 * 359.57809 * 7 5 4 9 9 C 1.47421 * 126.41174 * 180.26178 * 8 7 5 10 10 O 1.21602 * 119.99937 * 179.97438 * 9 8 7 11 11 N 1.34779 * 120.00515 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00176 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46804 * 179.97438 * 12 11 9 14 14 N 1.46897 * 109.46705 * 180.02562 * 13 12 11 15 15 C 1.46846 * 111.00276 * 45.79297 * 14 13 12 16 16 C 1.53042 * 109.52600 * 185.84037 * 15 14 13 17 17 C 1.53118 * 109.27445 * 300.81866 * 16 15 14 18 18 N 1.46502 * 109.57660 * 177.59203 * 17 16 15 19 19 C 1.36933 * 120.00217 * 85.28137 * 18 17 16 20 20 H 1.08000 * 119.99918 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00467 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00772 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 119.99593 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47037 * 90.00312 * 23 21 19 25 25 H 1.48505 * 109.47084 * 210.00108 * 23 21 19 26 26 H 1.48496 * 109.47227 * 329.99947 * 23 21 19 27 27 C 1.53117 * 109.16204 * 57.65367 * 17 16 15 28 28 C 1.46851 * 111.00167 * 170.00243 * 14 13 12 29 29 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47436 * 300.00556 * 1 2 3 31 31 H 1.09003 * 109.46561 * 60.00454 * 1 2 3 32 32 H 1.08998 * 109.47436 * 239.99444 * 2 1 3 33 33 H 1.09007 * 109.47001 * 119.99709 * 2 1 3 34 34 H 1.08002 * 126.29527 * 179.84921 * 7 5 4 35 35 H 0.97000 * 119.99526 * 359.97438 * 11 9 8 36 36 H 1.08991 * 109.46974 * 300.00073 * 12 11 9 37 37 H 1.09000 * 109.47030 * 60.00136 * 12 11 9 38 38 H 1.09000 * 109.46993 * 300.00196 * 13 12 11 39 39 H 1.09000 * 109.46880 * 60.00455 * 13 12 11 40 40 H 1.09003 * 109.46273 * 305.85711 * 15 14 13 41 41 H 1.08999 * 109.46444 * 65.82326 * 15 14 13 42 42 H 1.08998 * 109.50345 * 180.88448 * 16 15 14 43 43 H 1.08996 * 109.50210 * 60.75842 * 16 15 14 44 44 H 1.08998 * 109.52388 * 297.75198 * 17 16 15 45 45 H 0.96998 * 119.99799 * 265.29296 * 18 17 16 46 46 H 0.96993 * 120.00524 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.50787 * 182.39895 * 27 17 16 48 48 H 1.09002 * 109.50447 * 62.28640 * 27 17 16 49 49 H 1.09000 * 109.45715 * 294.17941 * 28 14 13 50 50 H 1.08996 * 109.45889 * 54.15278 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2875 2.1436 -1.0555 5 7 2.7275 3.4067 -0.6442 6 1 2.9802 4.1374 -1.2301 7 6 2.7443 3.4357 0.6979 8 6 2.3090 2.2035 1.1433 9 6 2.1609 1.7833 2.5485 10 8 1.7649 0.6636 2.8098 11 7 2.4644 2.6400 3.5438 12 6 2.3166 2.2225 4.9402 13 6 2.7248 3.3731 5.8624 14 7 2.5772 2.9542 7.2626 15 6 3.1461 1.6172 7.4748 16 6 2.8465 1.1544 8.9025 17 6 3.4528 2.1508 9.8945 18 7 3.1208 1.7451 11.2625 19 6 3.9040 0.8306 11.9146 20 1 4.7667 0.4086 11.4206 21 6 3.5891 0.4457 13.2106 22 7 4.3422 -0.4329 13.8377 23 14 2.0965 1.1751 14.0649 24 1 0.9068 0.3299 13.7900 25 1 2.3398 1.2261 15.5289 26 1 1.8563 2.5488 13.5548 27 6 2.8801 3.5442 9.6208 28 6 3.1787 3.9377 8.1724 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0394 4.2709 1.3157 35 1 2.7806 3.5330 3.3354 36 1 1.2776 1.9544 5.1312 37 1 2.9554 1.3601 5.1312 38 1 3.7640 3.6408 5.6712 39 1 2.0863 4.2357 5.6716 40 1 2.7036 0.9175 6.7658 41 1 4.2250 1.6534 7.3237 42 1 3.2824 0.1687 9.0645 43 1 1.7677 1.1047 9.0500 44 1 4.5358 2.1720 9.7736 45 1 2.3460 2.1242 11.7063 46 1 4.1219 -0.7021 14.7431 47 1 3.3398 4.2658 10.2961 48 1 1.8018 3.5321 9.7796 49 1 4.2574 3.9630 8.0179 50 1 2.7596 4.9233 7.9701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279438903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:08 Heat of formation + Delta-G solvation = 19.368839 kcal Electronic energy + Delta-G solvation = -28346.163275 eV Core-core repulsion = 24408.675283 eV Total energy + Delta-G solvation = -3937.487993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.43111 -40.48910 -39.82292 -37.18937 -35.82804 -35.06991 -34.05876 -32.35697 -31.73011 -31.30932 -31.29581 -28.82636 -26.04953 -25.02395 -24.60405 -24.17345 -23.17269 -22.20111 -21.38481 -20.93480 -20.49998 -19.50147 -19.35055 -17.63165 -17.16683 -16.74204 -16.63840 -16.28825 -16.03778 -15.70023 -15.61272 -15.54228 -15.19117 -14.97786 -14.91327 -14.81697 -14.45979 -14.31991 -14.06952 -13.89644 -13.37931 -13.29349 -13.04869 -12.91187 -12.66617 -12.46763 -12.45388 -12.26048 -12.14542 -12.04368 -11.84717 -11.80768 -11.77332 -11.60601 -11.18537 -10.87948 -10.86445 -10.55938 -10.15384 -9.72585 -9.29875 -9.20860 -8.01052 -5.33955 0.56469 1.08608 1.38649 1.42600 1.49659 1.80500 2.19041 2.46973 2.49914 3.09341 3.30080 3.46558 3.57887 3.74612 3.82161 4.01114 4.11191 4.17164 4.21057 4.23002 4.32127 4.38024 4.41496 4.45965 4.54249 4.56063 4.59887 4.68244 4.70757 4.77026 4.89722 4.95672 5.01976 5.04038 5.04527 5.13407 5.15794 5.22277 5.26647 5.42403 5.42717 5.49609 5.56874 5.77913 6.12395 6.20188 6.23665 6.28331 6.48498 6.70842 7.09737 7.36683 7.86865 8.06320 9.20627 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024088 B = 0.001829 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.139526 B =15305.344978 C =15941.630614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.052 4.052 3 C 0.122 3.878 4 N -0.327 5.327 5 N -0.447 5.447 6 H 0.461 0.539 7 C 0.140 3.860 8 C -0.321 4.321 9 C 0.589 3.411 10 O -0.582 6.582 11 N -0.711 5.711 12 C 0.122 3.878 13 C 0.054 3.946 14 N -0.542 5.542 15 C 0.061 3.939 16 C -0.125 4.125 17 C 0.173 3.827 18 N -0.752 5.752 19 C -0.227 4.227 20 H 0.053 0.947 21 C -0.068 4.068 22 N -0.986 5.986 23 Si 0.957 3.043 24 H -0.281 1.281 25 H -0.296 1.296 26 H -0.249 1.249 27 C -0.117 4.117 28 C 0.070 3.930 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.239 0.761 35 H 0.415 0.585 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.038 0.962 43 H 0.057 0.943 44 H 0.034 0.966 45 H 0.365 0.635 46 H 0.257 0.743 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.038 0.962 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 16.840 -32.729 37.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.046 4.046 4 N -0.150 5.150 5 N -0.153 5.153 6 H 0.310 0.690 7 C -0.015 4.015 8 C -0.336 4.336 9 C 0.378 3.622 10 O -0.462 6.462 11 N -0.364 5.364 12 C -0.002 4.002 13 C -0.073 4.073 14 N -0.267 5.267 15 C -0.067 4.067 16 C -0.166 4.166 17 C 0.065 3.935 18 N -0.395 5.395 19 C -0.358 4.358 20 H 0.071 0.929 21 C -0.259 4.259 22 N -0.637 5.637 23 Si 0.785 3.215 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.173 1.173 27 C -0.155 4.155 28 C -0.058 4.058 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.255 0.745 35 H 0.252 0.748 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.198 0.802 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.057 0.943 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.390 15.948 -33.681 37.654 hybrid contribution 0.577 0.288 1.492 1.625 sum -4.812 16.236 -32.189 36.372 Atomic orbital electron populations 1.21548 0.93521 1.02668 1.01208 1.20095 0.96945 0.88439 1.03620 1.22612 0.95190 0.97316 0.89471 1.77133 1.23066 0.92063 1.22707 1.46174 1.50337 1.12582 1.06194 0.69012 1.23820 0.93629 0.98356 0.85651 1.20280 1.22460 0.97447 0.93372 1.17507 0.76163 0.84106 0.84421 1.90758 1.48544 1.22052 1.84864 1.45501 1.68383 1.17506 1.05046 1.21329 1.01508 0.97435 0.79916 1.22237 1.01345 0.97507 0.86255 1.61935 1.58246 1.02128 1.04418 1.22093 0.97026 0.91182 0.96419 1.22090 1.00933 0.98887 0.94669 1.20484 0.96615 0.93499 0.82857 1.42811 1.32206 1.50840 1.13612 1.19015 1.05884 1.14817 0.96102 0.92915 1.25532 1.02282 1.00165 0.97965 1.69889 1.42474 1.37750 1.13560 0.85368 0.79422 0.79470 0.77267 1.20786 1.22307 1.17332 1.21804 1.01514 0.95429 0.96775 1.22016 0.97241 0.95870 0.90639 0.90850 0.93845 0.92514 0.89821 0.89877 0.74500 0.74778 0.92171 0.92671 0.92639 0.87708 0.90060 0.94954 0.94285 0.92443 0.94771 0.80175 0.93444 0.91065 0.91384 0.94343 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.89 71.98 0.71 -1.61 16 2 C -0.05 -1.00 5.97 29.85 0.18 -0.82 16 3 C 0.12 2.33 6.52 43.51 0.28 2.62 16 4 N -0.33 -5.54 12.63 -46.68 -0.59 -6.13 16 5 N -0.45 -3.28 7.29 -56.31 -0.41 -3.69 16 6 H 0.46 -0.20 8.96 -213.43 -1.91 -2.11 16 7 C 0.14 0.79 11.52 84.28 0.97 1.76 16 8 C -0.32 -5.06 6.13 -20.15 -0.12 -5.18 16 9 C 0.59 11.80 7.81 86.66 0.68 12.47 16 10 O -0.58 -16.99 14.92 -4.04 -0.06 -17.05 16 11 N -0.71 -9.28 5.54 -466.38 -2.59 -11.86 16 12 C 0.12 2.13 4.93 86.38 0.43 2.55 16 13 C 0.05 0.74 5.39 86.31 0.46 1.21 16 14 N -0.54 -11.50 4.81 -896.36 -4.31 -15.81 16 15 C 0.06 1.63 4.85 86.33 0.42 2.04 16 16 C -0.13 -4.42 5.68 30.65 0.17 -4.24 16 17 C 0.17 6.53 2.84 45.07 0.13 6.66 16 18 N -0.75 -35.51 4.93 -322.57 -1.59 -37.10 16 19 C -0.23 -13.17 10.42 84.03 0.88 -12.30 16 20 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 21 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 22 N -0.99 -64.35 13.97 21.65 0.30 -64.04 16 23 Si 0.96 46.29 27.74 68.60 1.90 48.20 16 24 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 27 C -0.12 -3.28 5.57 30.64 0.17 -3.11 16 28 C 0.07 1.44 5.42 86.32 0.47 1.91 16 29 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.92 6.55 -2.38 -0.02 1.90 16 34 H 0.24 -1.43 7.46 -2.91 -0.02 -1.45 16 35 H 0.41 1.71 7.40 -92.71 -0.69 1.03 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.20 6.21 -2.39 -0.01 1.18 16 38 H 0.06 0.61 8.08 -2.39 -0.02 0.60 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 2.10 5.81 -2.39 -0.01 2.09 16 41 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 45 H 0.37 16.53 5.66 -92.71 -0.52 16.00 16 46 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.10 1.53 8.12 -2.39 -0.02 1.51 16 Total: -1.00 -84.26 397.39 -3.26 -87.52 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -2.21 Total: 19.65 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 6.29 Total: 0.31 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -9.18 Total: -138.63 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.06 Total: -17.05 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.90 Total: 48.20 kcal Total: -84.26 -3.26 -87.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279438903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.888 kcal (2) G-P(sol) polarization free energy of solvation -84.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds