Wall clock time and date at job start Tue Mar 31 2020 20:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.38394 * 120.00059 * 179.72229 * 2 1 3 5 5 C 1.39892 * 120.00037 * 4.72643 * 4 2 1 6 6 N 1.31452 * 120.01435 * 179.70986 * 5 4 2 7 7 C 1.33273 * 120.00966 * 0.56353 * 6 5 4 8 8 C 1.47821 * 120.00518 * 179.73310 * 7 6 5 9 9 O 1.21561 * 120.00455 * 179.97438 * 8 7 6 10 10 N 1.34780 * 119.99442 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99686 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47751 * 325.00295 * 11 10 8 13 13 C 1.53000 * 109.47336 * 205.00067 * 11 10 8 14 14 N 1.46501 * 109.46916 * 54.99910 * 13 11 10 15 15 C 1.36934 * 119.99554 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00394 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99847 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99566 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00135 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47521 * 59.99393 * 19 17 15 21 21 H 1.48500 * 109.46827 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.46836 * 299.99427 * 19 17 15 23 23 C 1.53002 * 109.47341 * 84.99960 * 11 10 8 24 24 C 1.53002 * 109.47081 * 59.99989 * 23 11 10 25 25 C 1.52997 * 109.47586 * 180.02562 * 23 11 10 26 26 C 1.53000 * 109.46993 * 300.00318 * 23 11 10 27 27 C 1.39408 * 119.99657 * 359.71433 * 7 6 5 28 28 N 1.32050 * 119.98401 * 359.97438 * 27 7 6 29 29 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 30 30 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 31 31 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 32 32 H 1.09004 * 109.46973 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.47424 * 119.99471 * 3 2 1 34 34 H 1.08998 * 109.47492 * 239.99896 * 3 2 1 35 35 H 1.08005 * 119.99234 * 359.97438 * 5 4 2 36 36 H 0.96997 * 120.00550 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47439 * 175.00175 * 13 11 10 38 38 H 1.08998 * 109.47065 * 295.00018 * 13 11 10 39 39 H 0.96995 * 119.99967 * 0.02562 * 14 13 11 40 40 H 0.97006 * 119.99936 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.47027 * 60.00061 * 24 23 11 42 42 H 1.08995 * 109.47226 * 180.02562 * 24 23 11 43 43 H 1.09006 * 109.47098 * 300.00310 * 24 23 11 44 44 H 1.08998 * 109.46958 * 59.99646 * 25 23 11 45 45 H 1.08998 * 109.47562 * 180.02562 * 25 23 11 46 46 H 1.09001 * 109.46947 * 300.00199 * 25 23 11 47 47 H 1.08992 * 109.47392 * 59.99571 * 26 23 11 48 48 H 1.09008 * 109.46955 * 179.97438 * 26 23 11 49 49 H 1.09002 * 109.47249 * 299.99322 * 26 23 11 50 50 H 1.08005 * 120.00961 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1985 0.0058 5 6 1.4612 -2.4084 -0.0882 6 7 2.1186 -3.5468 -0.0884 7 6 3.4475 -3.5490 0.0122 8 6 4.1862 -4.8294 0.0178 9 8 5.3984 -4.8315 0.1091 10 7 3.5156 -5.9946 -0.0782 11 6 4.2476 -7.2636 -0.0721 12 1 5.2001 -7.1363 -0.5865 13 6 3.4204 -8.3331 -0.7881 14 7 3.0750 -7.8645 -2.1325 15 6 2.3319 -8.6586 -2.9645 16 1 2.0008 -9.6306 -2.6298 17 6 2.0051 -8.2148 -4.2386 18 7 2.4091 -7.0305 -4.6466 19 14 0.9908 -9.2978 -5.3733 20 1 -0.3240 -9.5802 -4.7435 21 1 0.7799 -8.5990 -6.6665 22 1 1.7100 -10.5751 -5.6119 23 6 4.5025 -7.6984 1.3725 24 6 3.1656 -7.8774 2.0947 25 6 5.2676 -9.0234 1.3790 26 6 5.3298 -6.6289 2.0886 27 6 4.1410 -2.3438 0.1117 28 7 3.4809 -1.2002 0.1057 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.4892 2.0972 0.0005 33 1 2.8241 1.3266 0.8900 34 1 2.8242 1.3265 -0.8899 35 1 0.3838 -2.4071 -0.1648 36 1 2.5484 -5.9931 -0.1507 37 1 4.0010 -9.2527 -0.8619 38 1 2.5074 -8.5242 -0.2243 39 1 3.3728 -6.9917 -2.4332 40 1 2.1811 -6.7205 -5.5370 41 1 2.5762 -8.6393 1.5846 42 1 3.3472 -8.1867 3.1240 43 1 2.6209 -6.9332 2.0901 44 1 6.2200 -8.8955 0.8646 45 1 5.4488 -9.3334 2.4082 46 1 4.6786 -9.7855 0.8688 47 1 4.7852 -5.6848 2.0840 48 1 5.5110 -6.9385 3.1179 49 1 6.2823 -6.5015 1.5742 50 1 5.2180 -2.3454 0.1928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284588739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:45 Heat of formation + Delta-G solvation = 34.764386 kcal Electronic energy + Delta-G solvation = -29960.281877 eV Core-core repulsion = 26023.461486 eV Total energy + Delta-G solvation = -3936.820391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.21799 -39.73338 -37.56265 -36.84277 -34.39961 -34.20430 -32.94826 -31.14757 -30.72681 -28.75014 -27.73753 -27.04431 -26.91596 -26.00736 -24.23032 -23.75040 -22.72602 -21.41575 -20.51903 -18.52586 -18.09025 -17.74034 -17.37172 -16.72784 -15.90820 -15.67787 -15.43634 -15.13201 -14.71417 -14.69221 -14.24731 -14.20323 -13.83369 -13.61311 -13.23666 -13.19500 -13.03819 -12.96897 -12.76640 -12.62510 -12.30937 -12.09046 -11.87197 -11.72013 -11.52584 -11.33111 -11.28905 -11.13463 -11.00878 -10.75810 -10.66223 -10.44748 -10.20022 -10.17285 -9.88361 -9.86747 -9.67670 -9.04609 -8.82719 -8.48180 -7.91495 -6.87677 -5.71378 -3.00635 0.68140 1.16014 2.47652 3.04223 3.46130 3.50393 3.51511 3.52731 3.98531 4.19309 4.21200 4.33416 4.61439 4.69448 4.88907 4.95647 5.02951 5.05749 5.13615 5.17966 5.26285 5.29963 5.30448 5.51327 5.51940 5.60303 5.66273 5.79078 5.87035 5.97956 5.99720 6.07021 6.13313 6.17472 6.20833 6.24655 6.39012 6.39831 6.54009 6.55210 6.60349 6.72596 6.81940 6.82374 7.06581 7.34546 7.72782 7.73620 8.05750 8.46137 8.62329 9.57777 10.15346 10.50568 11.50811 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008421 B = 0.003864 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.393464 B = 7244.634635 C = 9724.386624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.603 5.603 3 C 0.100 3.900 4 C 0.366 3.634 5 C -0.003 4.003 6 N -0.367 5.367 7 C -0.039 4.039 8 C 0.583 3.417 9 O -0.543 6.543 10 N -0.687 5.687 11 C 0.148 3.852 12 H 0.088 0.912 13 C 0.142 3.858 14 N -0.730 5.730 15 C -0.240 4.240 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.930 5.930 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.076 4.076 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.129 4.129 27 C 0.165 3.835 28 N -0.508 5.508 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.169 0.831 36 H 0.412 0.588 37 H 0.035 0.965 38 H 0.029 0.971 39 H 0.386 0.614 40 H 0.254 0.746 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.040 0.960 49 H 0.062 0.938 50 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 13.324 15.157 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.316 5.316 3 C -0.042 4.042 4 C 0.127 3.873 5 C -0.175 4.175 6 N -0.083 5.083 7 C -0.179 4.179 8 C 0.367 3.633 9 O -0.421 6.421 10 N -0.336 5.336 11 C 0.043 3.957 12 H 0.106 0.894 13 C 0.014 3.986 14 N -0.375 5.375 15 C -0.372 4.372 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.078 4.078 24 C -0.199 4.199 25 C -0.198 4.198 26 C -0.187 4.187 27 C 0.004 3.996 28 N -0.230 5.230 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.186 0.814 36 H 0.249 0.751 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.220 0.780 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.081 0.919 50 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.215 13.310 15.128 20.187 hybrid contribution -1.063 -0.139 -0.972 1.447 sum -2.278 13.171 14.156 19.470 Atomic orbital electron populations 1.21883 0.77608 1.03531 1.02390 1.46164 1.05611 1.03033 1.76746 1.21619 0.96645 0.83438 1.02547 1.19602 0.89882 0.87449 0.90415 1.23186 1.01296 0.86577 1.06465 1.68172 1.07869 1.28740 1.03501 1.21796 0.90661 0.95846 1.09645 1.17382 0.86470 0.82758 0.76660 1.90763 1.12877 1.87086 1.51353 1.45749 1.11644 1.04731 1.71526 1.21326 0.96839 0.83021 0.94524 0.89431 1.21092 0.96001 0.94199 0.87284 1.42346 1.64155 1.20523 1.10485 1.19158 1.25122 0.98512 0.94377 0.91260 1.24731 1.01413 0.96983 0.97646 1.69670 1.50488 1.18615 1.19074 0.86288 0.80114 0.79582 0.80289 1.21322 1.21794 1.21320 1.20899 0.95852 0.95883 0.95132 1.21915 0.96636 1.01933 0.99414 1.21882 1.00245 0.96344 1.01326 1.21886 1.00333 0.97862 0.98586 1.23469 1.01509 0.86005 0.88627 1.68107 1.06225 1.29614 1.19088 0.92069 0.90615 0.90490 0.90864 0.92026 0.92107 0.81384 0.75115 0.94707 0.95384 0.78012 0.93566 0.91899 0.93286 0.92811 0.92534 0.92945 0.91907 0.93014 0.94048 0.91888 0.80257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.04 59.85 0.60 1.10 16 2 N -0.60 -5.54 3.37 -189.51 -0.64 -6.18 16 3 C 0.10 0.75 10.19 59.85 0.61 1.36 16 4 C 0.37 4.56 7.37 -155.02 -1.14 3.42 16 5 C 0.00 -0.04 10.34 -17.10 -0.18 -0.21 16 6 N -0.37 -5.77 9.69 -9.44 -0.09 -5.86 16 7 C -0.04 -0.63 6.74 -82.89 -0.56 -1.19 16 8 C 0.58 10.35 6.15 -12.34 -0.08 10.27 16 9 O -0.54 -10.31 13.45 5.31 0.07 -10.24 16 10 N -0.69 -12.11 3.63 -54.75 -0.20 -12.31 16 11 C 0.15 2.59 1.69 -67.93 -0.11 2.48 16 12 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 13 C 0.14 2.83 5.10 -4.04 -0.02 2.81 16 14 N -0.73 -18.57 5.43 -59.91 -0.33 -18.89 16 15 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 19 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C -0.08 -1.10 0.62 -154.51 -0.10 -1.19 16 24 C -0.14 -1.89 7.97 37.16 0.30 -1.60 16 25 C -0.14 -1.84 8.12 37.16 0.30 -1.54 16 26 C -0.13 -1.88 7.00 37.16 0.26 -1.62 16 27 C 0.17 2.42 10.76 -17.02 -0.18 2.24 16 28 N -0.51 -7.02 9.71 -11.96 -0.12 -7.14 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.39 6.36 -51.93 -0.33 0.06 16 31 H 0.08 0.27 7.92 -51.93 -0.41 -0.14 16 32 H 0.07 0.34 7.79 -51.93 -0.40 -0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.17 1.65 6.25 -52.48 -0.33 1.33 16 36 H 0.41 7.48 7.94 -40.82 -0.32 7.16 16 37 H 0.04 0.70 6.71 -51.93 -0.35 0.35 16 38 H 0.03 0.55 6.17 -51.93 -0.32 0.23 16 39 H 0.39 10.60 7.33 -40.82 -0.30 10.31 16 40 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.06 0.86 6.32 -51.93 -0.33 0.53 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.74 7.60 -51.93 -0.39 0.34 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.84 6.54 -51.93 -0.34 0.50 16 47 H 0.05 0.81 5.77 -51.93 -0.30 0.51 16 48 H 0.04 0.53 8.14 -51.92 -0.42 0.10 16 49 H 0.06 0.99 7.53 -51.93 -0.39 0.59 16 50 H 0.18 2.39 7.63 -52.48 -0.40 1.99 16 LS Contribution 395.40 15.07 5.96 5.96 Total: -1.00 -33.53 395.40 -8.01 -41.54 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -7.82 Total: 14.38 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -0.55 Total: 9.02 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -0.65 Total: -78.20 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.53 -8.01 -41.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284588739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.302 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds