Wall clock time and date at job start Tue Mar 31 2020 20:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.38394 * 120.00059 * 179.72229 * 2 1 3 5 5 C 1.39892 * 120.00037 * 4.72643 * 4 2 1 6 6 N 1.31452 * 120.01435 * 179.70986 * 5 4 2 7 7 C 1.33273 * 120.00966 * 0.56353 * 6 5 4 8 8 C 1.47821 * 120.00518 * 179.73310 * 7 6 5 9 9 O 1.21561 * 120.00455 * 179.97438 * 8 7 6 10 10 N 1.34780 * 119.99442 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99686 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47751 * 325.00295 * 11 10 8 13 13 C 1.53000 * 109.47336 * 205.00067 * 11 10 8 14 14 N 1.46501 * 109.46916 * 54.99910 * 13 11 10 15 15 C 1.36934 * 119.99554 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00394 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99847 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99566 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00135 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47521 * 59.99393 * 19 17 15 21 21 H 1.48500 * 109.46827 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.46836 * 299.99427 * 19 17 15 23 23 C 1.53002 * 109.47341 * 84.99960 * 11 10 8 24 24 C 1.53002 * 109.47081 * 59.99989 * 23 11 10 25 25 C 1.52997 * 109.47586 * 180.02562 * 23 11 10 26 26 C 1.53000 * 109.46993 * 300.00318 * 23 11 10 27 27 C 1.39408 * 119.99657 * 359.71433 * 7 6 5 28 28 N 1.32050 * 119.98401 * 359.97438 * 27 7 6 29 29 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 30 30 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 31 31 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 32 32 H 1.09004 * 109.46973 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.47424 * 119.99471 * 3 2 1 34 34 H 1.08998 * 109.47492 * 239.99896 * 3 2 1 35 35 H 1.08005 * 119.99234 * 359.97438 * 5 4 2 36 36 H 0.96997 * 120.00550 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47439 * 175.00175 * 13 11 10 38 38 H 1.08998 * 109.47065 * 295.00018 * 13 11 10 39 39 H 0.96995 * 119.99967 * 0.02562 * 14 13 11 40 40 H 0.97006 * 119.99936 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.47027 * 60.00061 * 24 23 11 42 42 H 1.08995 * 109.47226 * 180.02562 * 24 23 11 43 43 H 1.09006 * 109.47098 * 300.00310 * 24 23 11 44 44 H 1.08998 * 109.46958 * 59.99646 * 25 23 11 45 45 H 1.08998 * 109.47562 * 180.02562 * 25 23 11 46 46 H 1.09001 * 109.46947 * 300.00199 * 25 23 11 47 47 H 1.08992 * 109.47392 * 59.99571 * 26 23 11 48 48 H 1.09008 * 109.46955 * 179.97438 * 26 23 11 49 49 H 1.09002 * 109.47249 * 299.99322 * 26 23 11 50 50 H 1.08005 * 120.00961 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1985 0.0058 5 6 1.4612 -2.4084 -0.0882 6 7 2.1186 -3.5468 -0.0884 7 6 3.4475 -3.5490 0.0122 8 6 4.1862 -4.8294 0.0178 9 8 5.3984 -4.8315 0.1091 10 7 3.5156 -5.9946 -0.0782 11 6 4.2476 -7.2636 -0.0721 12 1 5.2001 -7.1363 -0.5865 13 6 3.4204 -8.3331 -0.7881 14 7 3.0750 -7.8645 -2.1325 15 6 2.3319 -8.6586 -2.9645 16 1 2.0008 -9.6306 -2.6298 17 6 2.0051 -8.2148 -4.2386 18 7 2.4091 -7.0305 -4.6466 19 14 0.9908 -9.2978 -5.3733 20 1 -0.3240 -9.5802 -4.7435 21 1 0.7799 -8.5990 -6.6665 22 1 1.7100 -10.5751 -5.6119 23 6 4.5025 -7.6984 1.3725 24 6 3.1656 -7.8774 2.0947 25 6 5.2676 -9.0234 1.3790 26 6 5.3298 -6.6289 2.0886 27 6 4.1410 -2.3438 0.1117 28 7 3.4809 -1.2002 0.1057 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.4892 2.0972 0.0005 33 1 2.8241 1.3266 0.8900 34 1 2.8242 1.3265 -0.8899 35 1 0.3838 -2.4071 -0.1648 36 1 2.5484 -5.9931 -0.1507 37 1 4.0010 -9.2527 -0.8619 38 1 2.5074 -8.5242 -0.2243 39 1 3.3728 -6.9917 -2.4332 40 1 2.1811 -6.7205 -5.5370 41 1 2.5762 -8.6393 1.5846 42 1 3.3472 -8.1867 3.1240 43 1 2.6209 -6.9332 2.0901 44 1 6.2200 -8.8955 0.8646 45 1 5.4488 -9.3334 2.4082 46 1 4.6786 -9.7855 0.8688 47 1 4.7852 -5.6848 2.0840 48 1 5.5110 -6.9385 3.1179 49 1 6.2823 -6.5015 1.5742 50 1 5.2180 -2.3454 0.1928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284588739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:44 Heat of formation + Delta-G solvation = 11.678030 kcal Electronic energy + Delta-G solvation = -29961.282977 eV Core-core repulsion = 26023.461486 eV Total energy + Delta-G solvation = -3937.821491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.29708 -41.03625 -38.73924 -37.85133 -36.17114 -35.35330 -34.37747 -32.95771 -31.91062 -29.36463 -29.34779 -28.14072 -28.00070 -27.10360 -25.65309 -25.18102 -23.82706 -22.96737 -21.76909 -19.85433 -19.45754 -18.98556 -18.57183 -18.10073 -17.05221 -17.00627 -16.71156 -16.37568 -16.12579 -15.61507 -15.45803 -15.43304 -15.23682 -14.93544 -14.80637 -14.39441 -14.38544 -14.14733 -13.65253 -13.49440 -13.33188 -13.05240 -13.00855 -12.90820 -12.86048 -12.69813 -12.55068 -12.51506 -12.41494 -12.32841 -12.20060 -12.01056 -11.73725 -11.62382 -11.28075 -11.21663 -11.11204 -10.88762 -10.15889 -9.86811 -8.96895 -8.79592 -7.91124 -5.20765 -0.42077 0.09625 1.48158 1.51600 1.57444 1.70739 1.78855 2.22308 2.57979 2.82955 3.11910 3.23598 3.38222 3.42750 3.67663 3.82014 3.95478 4.03113 4.08765 4.20793 4.27833 4.36769 4.38328 4.47820 4.49859 4.54954 4.66700 4.74267 4.84853 4.87089 4.89685 4.90577 4.92420 4.98922 5.07160 5.09096 5.11013 5.18078 5.26926 5.33496 5.47147 5.51946 5.57879 5.65348 5.67354 5.95314 6.28485 6.31520 6.56768 6.80405 7.24705 7.35482 8.10057 8.33967 9.31880 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008421 B = 0.003864 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.393464 B = 7244.634635 C = 9724.386624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.593 5.593 3 C 0.095 3.905 4 C 0.366 3.634 5 C -0.001 4.001 6 N -0.389 5.389 7 C -0.072 4.072 8 C 0.581 3.419 9 O -0.565 6.565 10 N -0.687 5.687 11 C 0.156 3.844 12 H 0.060 0.940 13 C 0.145 3.855 14 N -0.743 5.743 15 C -0.243 4.243 16 H 0.080 0.920 17 C -0.074 4.074 18 N -0.970 5.970 19 Si 0.974 3.026 20 H -0.275 1.275 21 H -0.299 1.299 22 H -0.279 1.279 23 C -0.070 4.070 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.121 4.121 27 C 0.168 3.832 28 N -0.521 5.521 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.199 0.801 36 H 0.409 0.591 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.372 0.628 40 H 0.248 0.752 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.045 0.955 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.796 13.639 16.521 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.303 5.303 3 C -0.047 4.047 4 C 0.124 3.876 5 C -0.176 4.176 6 N -0.105 5.105 7 C -0.211 4.211 8 C 0.367 3.633 9 O -0.445 6.445 10 N -0.336 5.336 11 C 0.051 3.949 12 H 0.078 0.922 13 C 0.019 3.981 14 N -0.385 5.385 15 C -0.375 4.375 16 H 0.098 0.902 17 C -0.266 4.266 18 N -0.620 5.620 19 Si 0.803 3.197 20 H -0.201 1.201 21 H -0.225 1.225 22 H -0.205 1.205 23 C -0.072 4.072 24 C -0.194 4.194 25 C -0.196 4.196 26 C -0.178 4.178 27 C 0.007 3.993 28 N -0.244 5.244 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.216 0.784 36 H 0.245 0.755 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.203 0.797 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.055 0.945 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.104 13.611 16.539 21.643 hybrid contribution -0.568 -0.060 -1.342 1.458 sum -3.671 13.551 15.197 20.689 Atomic orbital electron populations 1.22227 0.75212 1.05435 1.03512 1.46617 1.07164 1.02419 1.74110 1.21795 0.97526 0.83611 1.01798 1.19909 0.89647 0.88785 0.89266 1.23699 1.02540 0.86025 1.05327 1.68096 1.07768 1.30302 1.04288 1.21527 0.91169 0.95331 1.13045 1.17650 0.86370 0.83328 0.75976 1.90729 1.13726 1.87499 1.52516 1.45707 1.11320 1.04842 1.71724 1.21196 0.94890 0.82572 0.96226 0.92229 1.21226 0.96781 0.94995 0.85147 1.42536 1.63954 1.19791 1.12268 1.19609 1.24245 0.98867 0.94745 0.90248 1.25563 1.03281 0.98379 0.99414 1.69855 1.52450 1.20620 1.19104 0.85205 0.78906 0.77803 0.77778 1.20096 1.22535 1.20497 1.20864 0.96931 0.96538 0.92845 1.21865 0.95487 1.01513 1.00486 1.21874 0.99618 0.95257 1.02819 1.21778 0.99149 0.97233 0.99632 1.23491 1.01755 0.85932 0.88129 1.68165 1.07057 1.28918 1.20309 0.91225 0.89873 0.87550 0.87255 0.92455 0.93191 0.78443 0.75487 0.94114 0.94111 0.79665 0.94288 0.92136 0.91008 0.93558 0.93143 0.90516 0.92073 0.94476 0.91717 0.93589 0.79936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.04 127.77 1.28 1.90 16 2 N -0.59 -9.52 3.37 -753.48 -2.54 -12.06 16 3 C 0.09 1.20 10.19 127.77 1.30 2.50 16 4 C 0.37 8.79 7.37 133.35 0.98 9.77 16 5 C 0.00 -0.03 10.34 85.15 0.88 0.85 16 6 N -0.39 -12.48 9.69 -183.79 -1.78 -14.26 16 7 C -0.07 -2.45 6.74 41.74 0.28 -2.16 16 8 C 0.58 21.79 6.15 86.78 0.53 22.33 16 9 O -0.56 -22.78 13.45 -3.91 -0.05 -22.83 16 10 N -0.69 -25.27 3.63 -445.41 -1.62 -26.89 16 11 C 0.16 5.63 1.69 44.99 0.08 5.70 16 12 H 0.06 2.48 7.58 -2.39 -0.02 2.46 16 13 C 0.14 5.82 5.10 86.38 0.44 6.26 16 14 N -0.74 -38.52 5.43 -343.45 -1.87 -40.39 16 15 C -0.24 -13.65 9.99 84.04 0.84 -12.81 16 16 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 17 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 18 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 19 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 C -0.07 -1.99 0.62 -52.18 -0.03 -2.02 16 24 C -0.14 -3.44 7.97 71.98 0.57 -2.86 16 25 C -0.14 -3.44 8.12 71.98 0.58 -2.85 16 26 C -0.12 -3.47 7.00 71.98 0.50 -2.97 16 27 C 0.17 5.13 10.76 84.94 0.91 6.05 16 28 N -0.52 -14.47 9.71 -191.74 -1.86 -16.33 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 0.58 6.36 -2.39 -0.02 0.56 16 31 H 0.11 0.29 7.92 -2.39 -0.02 0.27 16 32 H 0.11 0.61 7.79 -2.38 -0.02 0.59 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.20 3.50 6.25 -2.91 -0.02 3.48 16 36 H 0.41 15.45 7.94 -92.71 -0.74 14.71 16 37 H 0.04 1.62 6.71 -2.39 -0.02 1.60 16 38 H 0.04 1.57 6.17 -2.39 -0.01 1.55 16 39 H 0.37 21.22 7.33 -92.71 -0.68 20.54 16 40 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 41 H 0.06 1.55 6.32 -2.39 -0.02 1.53 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 1.23 7.60 -2.38 -0.02 1.22 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.06 1.54 6.54 -2.39 -0.02 1.52 16 47 H 0.04 1.17 5.77 -2.39 -0.01 1.16 16 48 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 49 H 0.04 1.47 7.53 -2.39 -0.02 1.45 16 50 H 0.18 5.20 7.63 -2.91 -0.02 5.18 16 Total: -1.00 -74.17 395.40 1.77 -72.40 By element: Atomic # 1 Polarization: 46.99 SS G_CDS: -0.45 Total: 46.54 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 9.63 Total: 25.82 kcal Atomic # 7 Polarization: -161.18 SS G_CDS: -9.39 Total: -170.57 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -74.17 1.77 -72.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284588739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.081 kcal (2) G-P(sol) polarization free energy of solvation -74.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds