Wall clock time and date at job start Tue Mar 31 2020 20:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46956 * 2 1 4 4 C 1.52997 * 109.47040 * 120.00389 * 2 1 3 5 5 C 1.53000 * 109.46600 * 174.99756 * 4 2 1 6 6 N 1.46497 * 109.46958 * 179.97438 * 5 4 2 7 7 C 1.34969 * 125.97787 * 124.71964 * 6 5 4 8 8 C 1.35243 * 107.85958 * 179.84037 * 7 6 5 9 9 C 1.40394 * 107.86904 * 0.42325 * 8 7 6 10 10 N 1.40189 * 125.97372 * 179.76217 * 9 8 7 11 11 C 1.34781 * 120.00012 * 359.97438 * 10 9 8 12 12 O 1.21589 * 119.99759 * 355.03871 * 11 10 9 13 13 N 1.34783 * 119.99766 * 175.04637 * 11 10 9 14 14 C 1.46960 * 120.59677 * 4.71310 * 13 11 10 15 15 C 1.53806 * 108.40047 * 124.76055 * 14 13 11 16 16 N 1.46963 * 108.58259 * 49.63337 * 15 14 13 17 17 C 1.36930 * 120.59480 * 124.62715 * 16 15 14 18 18 H 1.07995 * 120.00225 * 214.95699 * 17 16 15 19 19 C 1.38817 * 119.99985 * 34.95044 * 17 16 15 20 20 N 1.31614 * 119.99794 * 15.43434 * 19 17 16 21 21 Si 1.86805 * 120.00032 * 195.43168 * 19 17 16 22 22 H 1.48499 * 109.47020 * 60.00219 * 21 19 17 23 23 H 1.48494 * 109.46829 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46877 * 300.00190 * 21 19 17 25 25 C 1.46964 * 118.80851 * 304.65022 * 16 15 14 26 26 C 1.46968 * 120.58969 * 184.99232 * 13 11 10 27 27 N 1.31208 * 108.05367 * 359.73443 * 9 8 7 28 28 H 1.08999 * 109.47257 * 299.99501 * 1 2 3 29 29 H 1.09000 * 109.47677 * 59.99347 * 1 2 3 30 30 H 1.09001 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46577 * 240.00783 * 2 1 3 32 32 H 1.08999 * 109.46730 * 60.00176 * 3 2 1 33 33 H 1.09001 * 109.46951 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47015 * 300.00549 * 3 2 1 35 35 H 1.08996 * 109.47165 * 55.00109 * 4 2 1 36 36 H 1.08999 * 109.47237 * 294.99341 * 4 2 1 37 37 H 1.09002 * 109.47475 * 299.99838 * 5 4 2 38 38 H 1.09001 * 109.47534 * 60.00248 * 5 4 2 39 39 H 1.08002 * 126.06879 * 359.97438 * 7 6 5 40 40 H 1.08003 * 126.06168 * 180.15694 * 8 7 6 41 41 H 0.97007 * 120.00105 * 179.97438 * 10 9 8 42 42 H 1.08997 * 109.60746 * 244.54365 * 14 13 11 43 43 H 1.08998 * 109.61001 * 5.04754 * 14 13 11 44 44 H 1.09004 * 109.73649 * 289.84506 * 15 14 13 45 45 H 1.08996 * 109.53281 * 169.30374 * 15 14 13 46 46 H 0.97000 * 119.99803 * 179.97438 * 20 19 17 47 47 H 1.08993 * 109.61157 * 295.47635 * 25 16 15 48 48 H 1.09000 * 109.74802 * 175.05060 * 25 16 15 49 49 H 1.09000 * 109.60856 * 354.94662 * 26 13 11 50 50 H 1.08994 * 109.60716 * 115.28537 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1878 6 7 4.0533 -1.5212 2.3841 7 6 4.8281 -2.6262 2.4013 8 6 5.0630 -2.9480 3.6937 9 6 4.3987 -2.0093 4.4990 10 7 4.3853 -1.9896 5.9007 11 6 5.0529 -2.9329 6.5943 12 8 5.5912 -3.8519 6.0077 13 7 5.1236 -2.8576 7.9382 14 6 4.3928 -1.8123 8.6682 15 6 3.4976 -2.4898 9.7195 16 7 4.3117 -3.4479 10.4805 17 6 4.3843 -3.3708 11.8457 18 1 5.3050 -3.6197 12.3524 19 6 3.2745 -2.9727 12.5784 20 7 2.0843 -2.9624 12.0168 21 14 3.4705 -2.4516 14.3616 22 1 4.3881 -1.2867 14.4389 23 1 2.1451 -2.0760 14.9159 24 1 4.0339 -3.5786 15.1475 25 6 5.0470 -4.4898 9.7499 26 6 5.9378 -3.8156 8.6992 27 7 3.7930 -1.1533 3.7104 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6054 -1.7198 1.2950 36 1 1.7518 -0.1584 2.1369 37 1 3.8532 -1.3940 0.3000 38 1 3.9995 0.1674 1.1419 39 1 5.1970 -3.1577 1.5365 40 1 5.6531 -3.7820 4.0441 41 1 3.8956 -1.2971 6.3714 42 1 5.1015 -1.1470 9.1614 43 1 3.7763 -1.2431 7.9725 44 1 2.6814 -3.0158 9.2241 45 1 3.0936 -1.7356 10.3947 46 1 1.3088 -2.6846 12.5289 47 1 4.3411 -5.1581 9.2568 48 1 5.6660 -5.0588 10.4435 49 1 6.3418 -4.5698 8.0238 50 1 6.7557 -3.2901 9.1920 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310408324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:42 Heat of formation + Delta-G solvation = 81.703214 kcal Electronic energy + Delta-G solvation = -28857.157305 eV Core-core repulsion = 24922.372334 eV Total energy + Delta-G solvation = -3934.784971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.29603 -39.86666 -37.41976 -36.90074 -34.80004 -33.91312 -32.50712 -31.17803 -30.25602 -29.92373 -28.31926 -27.56532 -26.83923 -24.19450 -23.54849 -22.90211 -21.83982 -21.02423 -20.48615 -19.96783 -18.97448 -17.99821 -17.24990 -16.30196 -16.24367 -15.94163 -15.45029 -14.98557 -14.72693 -14.59465 -14.39677 -13.99379 -13.82015 -13.68660 -13.49113 -13.41712 -13.30210 -13.04316 -12.83445 -12.67003 -12.53518 -12.19833 -11.82481 -11.63756 -11.38346 -11.36570 -11.11841 -11.04633 -10.82021 -10.79431 -10.58060 -10.56690 -10.50433 -10.30009 -10.12387 -9.85941 -9.57422 -8.76754 -8.59988 -8.39038 -7.95060 -6.63681 -5.87535 -3.38501 1.89939 2.15000 2.82988 3.01268 3.33935 3.39986 3.40960 3.66908 4.04322 4.25844 4.41589 4.43000 4.50986 4.61010 4.81992 4.91901 5.02205 5.20335 5.23738 5.26625 5.30457 5.31571 5.44282 5.50790 5.59531 5.62803 5.71388 5.73562 5.81370 5.83319 5.89342 5.90697 5.92556 6.01714 6.07076 6.15917 6.30931 6.31308 6.48398 6.75831 6.90299 6.96798 7.04206 7.11487 7.22809 7.36475 7.73001 7.76865 8.21683 8.39053 8.77596 9.10979 9.71866 10.33546 11.20013 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002166 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.454091 B =12926.264030 C =14105.956114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.128 4.128 5 C 0.140 3.860 6 N -0.374 5.374 7 C 0.055 3.945 8 C -0.263 4.263 9 C 0.325 3.675 10 N -0.651 5.651 11 C 0.714 3.286 12 O -0.580 6.580 13 N -0.607 5.607 14 C 0.083 3.917 15 C 0.163 3.837 16 N -0.588 5.588 17 C -0.262 4.262 18 H 0.064 0.936 19 C 0.010 3.990 20 N -0.899 5.899 21 Si 0.904 3.096 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.131 3.869 26 C 0.114 3.886 27 N -0.330 5.330 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.173 0.827 40 H 0.173 0.827 41 H 0.411 0.589 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.089 0.911 46 H 0.256 0.744 47 H 0.025 0.975 48 H 0.068 0.932 49 H 0.085 0.915 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.710 6.359 -23.795 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.209 4.209 4 C -0.167 4.167 5 C 0.019 3.981 6 N -0.158 5.158 7 C -0.090 4.090 8 C -0.293 4.293 9 C 0.068 3.932 10 N -0.305 5.305 11 C 0.415 3.585 12 O -0.458 6.458 13 N -0.343 5.343 14 C -0.042 4.042 15 C 0.036 3.964 16 N -0.311 5.311 17 C -0.392 4.392 18 H 0.082 0.918 19 C -0.190 4.190 20 N -0.541 5.541 21 Si 0.733 3.267 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.004 3.996 26 C -0.011 4.011 27 N -0.160 5.160 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.190 0.810 40 H 0.190 0.810 41 H 0.249 0.751 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.103 0.897 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.196 6.795 -24.201 25.165 hybrid contribution 0.084 0.023 1.224 1.227 sum 1.280 6.818 -22.977 24.001 Atomic orbital electron populations 1.21826 0.94762 1.01929 1.01972 1.21074 0.96261 0.96374 0.97585 1.21933 1.01036 0.95872 1.02092 1.21957 0.93652 1.01813 0.99231 1.21741 0.95530 0.97812 0.83027 1.48138 1.40958 1.22506 1.04174 1.22562 0.96634 0.90501 0.99346 1.21883 1.11206 1.05968 0.90269 1.18886 0.95983 0.94419 0.83898 1.41929 1.54418 1.32122 1.02021 1.15597 0.79301 0.81624 0.81979 1.90784 1.52231 1.34613 1.68157 1.47235 1.50544 1.33705 1.02794 1.22722 0.96007 0.89942 0.95519 1.21139 0.90610 0.93240 0.91408 1.43858 1.55159 1.29526 1.02575 1.19080 0.95030 1.43667 0.81421 0.91794 1.25256 0.94822 1.00974 0.97927 1.70005 0.97689 1.49564 1.36852 0.86360 0.76777 0.78856 0.84663 1.20833 1.21615 1.20707 1.21347 0.94163 0.91165 0.92965 1.22174 0.93203 0.91730 0.93952 1.77284 1.27733 1.24100 0.86903 0.92436 0.92577 0.92611 0.91086 0.92323 0.92526 0.92619 0.91330 0.90179 0.88896 0.89938 0.80997 0.81006 0.75083 0.91351 0.92072 0.95525 0.89236 0.93392 0.95737 0.91352 0.89666 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.09 -0.55 2.92 -90.62 -0.26 -0.81 16 3 C -0.15 -0.85 8.95 37.16 0.33 -0.52 16 4 C -0.13 -1.00 4.87 -26.73 -0.13 -1.13 16 5 C 0.14 1.08 6.26 -4.04 -0.03 1.06 16 6 N -0.37 -4.43 3.68 -61.38 -0.23 -4.65 16 7 C 0.05 0.64 11.44 -17.24 -0.20 0.44 16 8 C -0.26 -4.00 9.61 -39.84 -0.38 -4.38 16 9 C 0.33 5.29 8.11 -154.37 -1.25 4.04 16 10 N -0.65 -10.63 5.36 -15.51 -0.08 -10.71 16 11 C 0.71 13.12 8.26 -86.91 -0.72 12.40 16 12 O -0.58 -11.71 12.90 5.29 0.07 -11.64 16 13 N -0.61 -11.07 2.94 -177.95 -0.52 -11.59 16 14 C 0.08 1.46 6.59 -3.37 -0.02 1.44 16 15 C 0.16 3.65 5.48 -3.37 -0.02 3.63 16 16 N -0.59 -14.20 2.93 -171.78 -0.50 -14.70 16 17 C -0.26 -6.91 9.51 -15.06 -0.14 -7.06 16 18 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 19 C 0.01 0.27 4.90 -17.43 -0.09 0.19 16 20 N -0.90 -25.30 11.59 55.49 0.64 -24.65 16 21 Si 0.90 20.96 29.58 -169.99 -5.03 15.93 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 C 0.13 2.72 6.67 -3.60 -0.02 2.70 16 26 C 0.11 2.06 6.60 -3.59 -0.02 2.04 16 27 N -0.33 -4.96 12.43 31.44 0.39 -4.57 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.46 8.07 -51.93 -0.42 0.05 16 38 H 0.08 0.60 6.56 -51.93 -0.34 0.25 16 39 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.17 2.86 5.93 -52.48 -0.31 2.55 16 41 H 0.41 5.99 6.29 -40.82 -0.26 5.73 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.06 0.91 5.61 -51.93 -0.29 0.62 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.09 2.19 6.46 -51.93 -0.34 1.85 16 46 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 49 H 0.09 1.50 6.99 -51.93 -0.36 1.14 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -32.04 394.45 -10.04 -42.09 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.11 Total: 5.07 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: -2.61 Total: 13.49 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -0.30 Total: -70.89 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.07 Total: -11.64 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.04 -10.04 -42.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310408324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.791 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds