Wall clock time and date at job start Tue Mar 31 2020 20:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46956 * 2 1 4 4 C 1.52997 * 109.47040 * 120.00389 * 2 1 3 5 5 C 1.53000 * 109.46600 * 174.99756 * 4 2 1 6 6 N 1.46497 * 109.46958 * 179.97438 * 5 4 2 7 7 C 1.34969 * 125.97787 * 124.71964 * 6 5 4 8 8 C 1.35243 * 107.85958 * 179.84037 * 7 6 5 9 9 C 1.40394 * 107.86904 * 0.42325 * 8 7 6 10 10 N 1.40189 * 125.97372 * 179.76217 * 9 8 7 11 11 C 1.34781 * 120.00012 * 359.97438 * 10 9 8 12 12 O 1.21589 * 119.99759 * 355.03871 * 11 10 9 13 13 N 1.34783 * 119.99766 * 175.04637 * 11 10 9 14 14 C 1.46960 * 120.59677 * 4.71310 * 13 11 10 15 15 C 1.53806 * 108.40047 * 124.76055 * 14 13 11 16 16 N 1.46963 * 108.58259 * 49.63337 * 15 14 13 17 17 C 1.36930 * 120.59480 * 124.62715 * 16 15 14 18 18 H 1.07995 * 120.00225 * 214.95699 * 17 16 15 19 19 C 1.38817 * 119.99985 * 34.95044 * 17 16 15 20 20 N 1.31614 * 119.99794 * 15.43434 * 19 17 16 21 21 Si 1.86805 * 120.00032 * 195.43168 * 19 17 16 22 22 H 1.48499 * 109.47020 * 60.00219 * 21 19 17 23 23 H 1.48494 * 109.46829 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46877 * 300.00190 * 21 19 17 25 25 C 1.46964 * 118.80851 * 304.65022 * 16 15 14 26 26 C 1.46968 * 120.58969 * 184.99232 * 13 11 10 27 27 N 1.31208 * 108.05367 * 359.73443 * 9 8 7 28 28 H 1.08999 * 109.47257 * 299.99501 * 1 2 3 29 29 H 1.09000 * 109.47677 * 59.99347 * 1 2 3 30 30 H 1.09001 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46577 * 240.00783 * 2 1 3 32 32 H 1.08999 * 109.46730 * 60.00176 * 3 2 1 33 33 H 1.09001 * 109.46951 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47015 * 300.00549 * 3 2 1 35 35 H 1.08996 * 109.47165 * 55.00109 * 4 2 1 36 36 H 1.08999 * 109.47237 * 294.99341 * 4 2 1 37 37 H 1.09002 * 109.47475 * 299.99838 * 5 4 2 38 38 H 1.09001 * 109.47534 * 60.00248 * 5 4 2 39 39 H 1.08002 * 126.06879 * 359.97438 * 7 6 5 40 40 H 1.08003 * 126.06168 * 180.15694 * 8 7 6 41 41 H 0.97007 * 120.00105 * 179.97438 * 10 9 8 42 42 H 1.08997 * 109.60746 * 244.54365 * 14 13 11 43 43 H 1.08998 * 109.61001 * 5.04754 * 14 13 11 44 44 H 1.09004 * 109.73649 * 289.84506 * 15 14 13 45 45 H 1.08996 * 109.53281 * 169.30374 * 15 14 13 46 46 H 0.97000 * 119.99803 * 179.97438 * 20 19 17 47 47 H 1.08993 * 109.61157 * 295.47635 * 25 16 15 48 48 H 1.09000 * 109.74802 * 175.05060 * 25 16 15 49 49 H 1.09000 * 109.60856 * 354.94662 * 26 13 11 50 50 H 1.08994 * 109.60716 * 115.28537 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1878 6 7 4.0533 -1.5212 2.3841 7 6 4.8281 -2.6262 2.4013 8 6 5.0630 -2.9480 3.6937 9 6 4.3987 -2.0093 4.4990 10 7 4.3853 -1.9896 5.9007 11 6 5.0529 -2.9329 6.5943 12 8 5.5912 -3.8519 6.0077 13 7 5.1236 -2.8576 7.9382 14 6 4.3928 -1.8123 8.6682 15 6 3.4976 -2.4898 9.7195 16 7 4.3117 -3.4479 10.4805 17 6 4.3843 -3.3708 11.8457 18 1 5.3050 -3.6197 12.3524 19 6 3.2745 -2.9727 12.5784 20 7 2.0843 -2.9624 12.0168 21 14 3.4705 -2.4516 14.3616 22 1 4.3881 -1.2867 14.4389 23 1 2.1451 -2.0760 14.9159 24 1 4.0339 -3.5786 15.1475 25 6 5.0470 -4.4898 9.7499 26 6 5.9378 -3.8156 8.6992 27 7 3.7930 -1.1533 3.7104 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6054 -1.7198 1.2950 36 1 1.7518 -0.1584 2.1369 37 1 3.8532 -1.3940 0.3000 38 1 3.9995 0.1674 1.1419 39 1 5.1970 -3.1577 1.5365 40 1 5.6531 -3.7820 4.0441 41 1 3.8956 -1.2971 6.3714 42 1 5.1015 -1.1470 9.1614 43 1 3.7763 -1.2431 7.9725 44 1 2.6814 -3.0158 9.2241 45 1 3.0936 -1.7356 10.3947 46 1 1.3088 -2.6846 12.5289 47 1 4.3411 -5.1581 9.2568 48 1 5.6660 -5.0588 10.4435 49 1 6.3418 -4.5698 8.0238 50 1 6.7557 -3.2901 9.1920 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310408324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:38 Heat of formation + Delta-G solvation = 63.702451 kcal Electronic energy + Delta-G solvation = -28857.937877 eV Core-core repulsion = 24922.372334 eV Total energy + Delta-G solvation = -3935.565543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -42.39803 -41.22847 -38.65759 -37.88098 -36.06291 -35.62585 -33.59091 -32.83329 -31.85873 -31.02973 -29.28492 -28.47358 -28.01698 -25.70740 -24.79311 -24.34090 -23.17963 -22.16563 -21.53252 -20.82615 -20.39692 -19.47729 -18.39679 -17.95578 -17.33084 -17.02352 -16.71540 -16.52638 -16.05441 -15.60795 -15.51483 -15.31058 -15.20663 -15.03358 -14.94408 -14.63487 -14.38784 -14.15319 -13.92592 -13.69034 -13.30321 -13.19331 -13.13754 -12.74353 -12.62618 -12.54313 -12.47701 -12.25310 -12.10717 -12.06604 -11.96573 -11.75178 -11.65296 -11.63195 -11.51257 -11.41725 -11.05932 -10.58706 -9.97162 -9.78332 -9.11922 -8.57365 -7.88918 -5.44202 0.87439 1.05130 1.50129 1.51338 1.58472 1.62305 1.88610 2.32722 2.50875 2.74302 3.26087 3.55917 3.61884 3.86379 3.94585 4.02542 4.07978 4.17905 4.23190 4.28077 4.36839 4.42071 4.50346 4.53428 4.56207 4.67612 4.75445 4.77299 4.81404 4.83602 4.89373 4.90773 5.02408 5.05959 5.09131 5.09874 5.19157 5.21422 5.30219 5.43213 5.44758 5.50771 5.56996 5.66113 5.76241 5.86674 6.22046 6.39165 6.53161 6.94670 7.11647 7.35839 7.77082 8.35410 9.15742 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002166 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.454091 B =12926.264030 C =14105.956114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.152 4.152 4 C -0.122 4.122 5 C 0.131 3.869 6 N -0.365 5.365 7 C 0.082 3.918 8 C -0.300 4.300 9 C 0.298 3.702 10 N -0.646 5.646 11 C 0.714 3.286 12 O -0.599 6.599 13 N -0.611 5.611 14 C 0.099 3.901 15 C 0.170 3.830 16 N -0.605 5.605 17 C -0.270 4.270 18 H 0.068 0.932 19 C -0.041 4.041 20 N -0.932 5.932 21 Si 0.969 3.031 22 H -0.274 1.274 23 H -0.296 1.296 24 H -0.276 1.276 25 C 0.131 3.869 26 C 0.125 3.875 27 N -0.350 5.350 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.133 0.867 38 H 0.092 0.908 39 H 0.221 0.779 40 H 0.154 0.846 41 H 0.416 0.584 42 H 0.080 0.920 43 H 0.089 0.911 44 H -0.002 1.002 45 H 0.066 0.934 46 H 0.252 0.748 47 H 0.006 0.994 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.919 7.171 -26.125 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 C -0.209 4.209 4 C -0.160 4.160 5 C 0.012 3.988 6 N -0.149 5.149 7 C -0.064 4.064 8 C -0.331 4.331 9 C 0.043 3.957 10 N -0.299 5.299 11 C 0.415 3.585 12 O -0.478 6.478 13 N -0.347 5.347 14 C -0.025 4.025 15 C 0.043 3.957 16 N -0.329 5.329 17 C -0.400 4.400 18 H 0.086 0.914 19 C -0.238 4.238 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.199 1.199 23 H -0.222 1.222 24 H -0.202 1.202 25 C 0.005 3.995 26 C 0.001 3.999 27 N -0.181 5.181 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.151 0.849 38 H 0.110 0.890 39 H 0.238 0.762 40 H 0.171 0.829 41 H 0.255 0.745 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.016 0.984 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.024 0.976 48 H 0.095 0.905 49 H 0.110 0.890 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.408 7.636 -26.560 27.741 hybrid contribution -0.334 -0.255 1.788 1.836 sum 2.074 7.381 -24.772 25.932 Atomic orbital electron populations 1.21847 0.95154 1.01792 1.01912 1.21044 0.95900 0.96455 0.97185 1.21936 1.01510 0.95600 1.01883 1.21870 0.93921 1.01055 0.99195 1.22190 0.95219 0.98835 0.82585 1.48542 1.39955 1.22387 1.03993 1.23143 0.94369 0.89447 0.99485 1.21851 1.12967 1.06364 0.91951 1.19120 0.97283 0.95549 0.83758 1.41757 1.53966 1.31700 1.02527 1.15637 0.79288 0.81716 0.81853 1.90777 1.53105 1.35481 1.68480 1.47241 1.50650 1.33826 1.02942 1.22485 0.95684 0.89515 0.94846 1.20951 0.90711 0.92335 0.91724 1.44127 1.55467 1.30825 1.02477 1.19416 0.95096 1.42802 0.82648 0.91405 1.26000 0.94512 1.01502 1.01759 1.70158 0.98282 1.51012 1.38215 0.85329 0.76332 0.78608 0.80034 1.19943 1.22246 1.20187 1.21411 0.93965 0.90626 0.93525 1.22013 0.92714 0.91963 0.93225 1.77219 1.28003 1.24406 0.88463 0.93663 0.91507 0.92804 0.89056 0.93727 0.91750 0.91683 0.92267 0.92880 0.84880 0.88998 0.76209 0.82897 0.74456 0.90222 0.89261 0.98395 0.91558 0.93912 0.97588 0.90479 0.88963 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.19 71.98 0.66 -0.94 16 2 C -0.09 -0.81 2.92 -10.79 -0.03 -0.84 16 3 C -0.15 -1.38 8.95 71.98 0.64 -0.74 16 4 C -0.12 -1.70 4.87 30.59 0.15 -1.55 16 5 C 0.13 1.60 6.26 86.38 0.54 2.14 16 6 N -0.37 -7.80 3.68 -348.10 -1.28 -9.08 16 7 C 0.08 1.68 11.44 83.52 0.96 2.64 16 8 C -0.30 -8.94 9.61 22.10 0.21 -8.73 16 9 C 0.30 9.64 8.11 133.31 1.08 10.72 16 10 N -0.65 -21.08 5.36 -321.23 -1.72 -22.80 16 11 C 0.71 26.20 8.26 179.05 1.48 27.68 16 12 O -0.60 -24.33 12.90 -3.99 -0.05 -24.38 16 13 N -0.61 -22.06 2.94 -835.16 -2.46 -24.51 16 14 C 0.10 3.47 6.59 86.56 0.57 4.04 16 15 C 0.17 7.79 5.48 86.56 0.47 8.26 16 16 N -0.61 -29.64 2.93 -697.38 -2.04 -31.68 16 17 C -0.27 -14.29 9.51 84.04 0.80 -13.49 16 18 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 19 C -0.04 -2.23 4.90 84.86 0.42 -1.81 16 20 N -0.93 -53.88 11.59 21.65 0.25 -53.63 16 21 Si 0.97 43.41 29.58 68.60 2.03 45.44 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 C 0.13 5.50 6.67 86.42 0.58 6.08 16 26 C 0.12 4.46 6.60 86.41 0.57 5.03 16 27 N -0.35 -10.27 12.43 -54.44 -0.68 -10.95 16 28 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.48 6.56 -2.39 -0.02 0.47 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.13 0.63 8.07 -2.39 -0.02 0.61 16 38 H 0.09 1.02 6.56 -2.39 -0.02 1.01 16 39 H 0.22 2.16 8.06 -2.91 -0.02 2.13 16 40 H 0.15 5.14 5.93 -2.91 -0.02 5.12 16 41 H 0.42 12.05 6.29 -92.70 -0.58 11.47 16 42 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.09 2.61 5.61 -2.39 -0.01 2.59 16 44 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.07 3.34 6.46 -2.39 -0.02 3.33 16 46 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 47 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 48 H 0.08 3.05 7.94 -2.39 -0.02 3.03 16 49 H 0.09 3.19 6.99 -2.39 -0.02 3.18 16 50 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -71.55 394.45 3.51 -68.05 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.35 Total: 25.04 kcal Atomic # 6 Polarization: 29.40 SS G_CDS: 9.10 Total: 38.50 kcal Atomic # 7 Polarization: -144.73 SS G_CDS: -7.93 Total: -152.65 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -71.55 3.51 -68.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310408324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.750 kcal (2) G-P(sol) polarization free energy of solvation -71.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds