Wall clock time and date at job start Tue Mar 31 2020 20:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 120.00180 * 2 1 4 4 H 1.08002 * 119.99822 * 321.77617 * 3 2 1 5 5 C 1.38808 * 120.00250 * 141.77313 * 3 2 1 6 6 N 1.31615 * 120.00148 * 157.39742 * 5 3 2 7 7 Si 1.86803 * 120.00023 * 337.39853 * 5 3 2 8 8 H 1.48504 * 109.47093 * 95.66318 * 7 5 3 9 9 H 1.48492 * 109.47076 * 215.66597 * 7 5 3 10 10 H 1.48504 * 109.47033 * 335.67020 * 7 5 3 11 11 C 1.46495 * 119.99911 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47657 * 89.99733 * 11 2 1 13 13 H 1.08999 * 110.88887 * 305.70230 * 12 11 2 14 14 C 1.55153 * 111.00963 * 181.81792 * 12 11 2 15 15 C 1.54366 * 102.92455 * 206.45401 * 14 12 11 16 16 N 1.47018 * 107.28915 * 22.13696 * 15 14 12 17 17 C 1.34776 * 125.65269 * 181.12536 * 16 15 14 18 18 O 1.21596 * 120.00179 * 179.97438 * 17 16 15 19 19 C 1.47524 * 119.99855 * 359.96614 * 17 16 15 20 20 C 1.36596 * 125.76995 * 179.71591 * 19 17 16 21 21 N 1.34815 * 106.83616 * 179.89420 * 20 19 17 22 22 C 1.46504 * 126.59213 * 180.10765 * 21 20 19 23 23 C 1.52999 * 109.47333 * 75.27168 * 22 21 20 24 24 C 1.53008 * 109.47020 * 195.27498 * 22 21 20 25 25 C 1.53006 * 109.47128 * 315.26983 * 22 21 20 26 26 N 1.40210 * 106.81396 * 0.35556 * 21 20 19 27 27 N 1.28764 * 108.36402 * 359.77499 * 26 21 20 28 28 C 1.47424 * 108.70414 * 1.09554 * 16 15 14 29 29 H 1.08996 * 109.47240 * 84.96709 * 1 2 3 30 30 H 1.09005 * 109.47465 * 324.96731 * 1 2 3 31 31 H 1.09004 * 109.47284 * 204.96742 * 1 2 3 32 32 H 0.97004 * 120.00377 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47424 * 209.99631 * 11 2 1 34 34 H 1.09002 * 109.47212 * 329.99483 * 11 2 1 35 35 H 1.09001 * 110.72127 * 324.78995 * 14 12 11 36 36 H 1.09001 * 110.72229 * 88.06015 * 14 12 11 37 37 H 1.08998 * 109.84811 * 262.73056 * 15 14 12 38 38 H 1.08997 * 110.03348 * 141.64926 * 15 14 12 39 39 H 1.07997 * 126.58297 * 0.03188 * 20 19 17 40 40 H 1.09000 * 109.46818 * 60.00397 * 23 22 21 41 41 H 1.08994 * 109.46894 * 179.97438 * 23 22 21 42 42 H 1.08994 * 109.47222 * 300.00254 * 23 22 21 43 43 H 1.08996 * 109.46948 * 59.99818 * 24 22 21 44 44 H 1.08998 * 109.46805 * 179.97438 * 24 22 21 45 45 H 1.09001 * 109.46658 * 299.99933 * 24 22 21 46 46 H 1.09003 * 109.46908 * 60.00063 * 25 22 21 47 47 H 1.09001 * 109.46979 * 180.02562 * 25 22 21 48 48 H 1.08996 * 109.47123 * 300.00162 * 25 22 21 49 49 H 1.08995 * 110.37231 * 217.03366 * 28 16 15 50 50 H 1.09005 * 110.46272 * 94.75343 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7833 2.0209 -0.5787 5 6 3.3145 1.3148 0.7438 6 7 4.1992 2.2362 0.4268 7 14 3.6265 0.1805 2.1949 8 1 4.4693 -0.9616 1.7581 9 1 4.3270 0.9307 3.2679 10 1 2.3312 -0.3296 2.7118 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5209 -1.7501 -2.0077 14 6 3.1877 -3.0754 -1.4855 15 6 3.9369 -3.0225 -2.8342 16 7 4.0793 -1.6056 -3.1996 17 6 4.6601 -1.1384 -4.3225 18 8 4.7217 0.0595 -4.5220 19 6 5.2213 -2.0804 -5.3094 20 6 5.8282 -1.7383 -6.4843 21 7 6.1957 -2.8887 -7.0834 22 6 6.8848 -3.0223 -8.3693 23 6 8.3593 -2.6514 -8.1988 24 6 6.7758 -4.4680 -8.8586 25 6 6.2388 -2.0873 -9.3937 26 7 5.7865 -3.9329 -6.2419 27 7 5.2166 -3.4205 -5.2072 28 6 3.4809 -0.7803 -2.1346 29 1 -0.3633 0.0902 -1.0237 30 1 -0.3634 0.8415 0.5899 31 1 -0.3634 -0.9316 0.4338 32 1 5.0135 2.3261 0.9463 33 1 3.1499 -1.1386 0.5133 34 1 1.6084 -2.0286 0.5130 35 1 3.8910 -3.1606 -0.6571 36 1 2.4734 -3.8987 -1.4725 37 1 3.3618 -3.5462 -3.5978 38 1 4.9210 -3.4799 -2.7329 39 1 5.9857 -0.7381 -6.8600 40 1 8.8195 -3.3176 -7.4691 41 1 8.8720 -2.7512 -9.1555 42 1 8.4370 -1.6216 -7.8503 43 1 5.7254 -4.7322 -8.9800 44 1 7.2881 -4.5672 -9.8155 45 1 7.2360 -5.1341 -8.1288 46 1 6.3164 -1.0574 -9.0452 47 1 6.7512 -2.1870 -10.3506 48 1 5.1884 -2.3515 -9.5152 49 1 2.9796 0.0874 -2.5634 50 1 4.2441 -0.4637 -1.4236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317840343.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:26 Heat of formation + Delta-G solvation = 91.865078 kcal Electronic energy + Delta-G solvation = -29881.880607 eV Core-core repulsion = 25947.536287 eV Total energy + Delta-G solvation = -3934.344320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.32781 -39.43068 -37.73640 -37.27347 -35.40071 -32.32245 -31.86191 -31.32864 -30.53699 -28.72833 -28.05772 -27.99337 -26.27768 -25.75821 -23.84550 -23.58418 -21.97807 -21.00772 -20.65272 -19.85065 -18.96423 -17.34719 -16.79459 -16.38506 -16.21747 -15.58778 -15.22830 -15.09822 -14.74842 -14.61233 -14.46178 -13.91404 -13.78693 -13.28867 -13.11871 -13.06890 -12.97656 -12.81655 -12.63684 -12.61607 -12.38017 -12.29489 -12.09774 -11.91599 -11.81507 -11.74740 -11.55156 -11.42600 -11.09744 -10.93175 -10.79574 -10.52391 -10.41815 -10.20788 -10.10976 -9.72510 -9.67318 -9.48063 -9.28959 -8.44975 -8.09927 -6.72525 -5.93487 -3.35932 1.09673 1.82337 1.82719 3.32778 3.34714 3.49721 3.54687 3.56989 3.84844 4.10398 4.18768 4.22729 4.55920 4.59969 4.81760 4.88729 4.91709 4.99203 5.06309 5.06985 5.09032 5.11055 5.20679 5.26501 5.32011 5.42286 5.43788 5.50841 5.57399 5.64424 5.78779 5.83536 6.00719 6.12536 6.16398 6.26553 6.30722 6.33909 6.39733 6.49402 6.61343 6.71116 6.77206 6.82007 6.95198 7.06081 7.88140 7.99226 8.11238 8.45553 8.51878 9.05151 9.76778 10.18357 11.21345 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020819 B = 0.002727 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.601148 B =10264.862883 C =10603.609699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.612 5.612 3 C -0.268 4.268 4 H 0.078 0.922 5 C 0.040 3.960 6 N -0.892 5.892 7 Si 0.871 3.129 8 H -0.285 1.285 9 H -0.302 1.302 10 H -0.270 1.270 11 C 0.148 3.852 12 C -0.113 4.113 13 H 0.076 0.924 14 C -0.134 4.134 15 C 0.113 3.887 16 N -0.603 5.603 17 C 0.608 3.392 18 O -0.536 6.536 19 C -0.089 4.089 20 C 0.090 3.910 21 N -0.353 5.353 22 C 0.170 3.830 23 C -0.161 4.161 24 C -0.148 4.148 25 C -0.163 4.163 26 N -0.071 5.071 27 N -0.204 5.204 28 C 0.132 3.868 29 H 0.008 0.992 30 H 0.041 0.959 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.200 0.800 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 -14.451 -19.135 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.336 5.336 3 C -0.397 4.397 4 H 0.095 0.905 5 C -0.161 4.161 6 N -0.533 5.533 7 Si 0.701 3.299 8 H -0.213 1.213 9 H -0.230 1.230 10 H -0.195 1.195 11 C 0.022 3.978 12 C -0.135 4.135 13 H 0.094 0.906 14 C -0.173 4.173 15 C -0.010 4.010 16 N -0.336 5.336 17 C 0.394 3.606 18 O -0.413 6.413 19 C -0.228 4.228 20 C -0.067 4.067 21 N -0.140 5.140 22 C 0.087 3.913 23 C -0.220 4.220 24 C -0.205 4.205 25 C -0.222 4.222 26 N -0.051 5.051 27 N -0.077 5.077 28 C 0.011 3.989 29 H 0.026 0.974 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.217 0.783 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.772 -15.187 -19.084 25.063 hybrid contribution 0.484 0.431 0.578 0.868 sum 6.255 -14.756 -18.506 24.482 Atomic orbital electron populations 1.21110 0.84576 0.98711 0.97685 1.44065 1.00782 1.01998 1.86747 1.18697 1.06214 0.90814 1.23965 0.90483 1.25476 0.96865 0.96291 0.97513 1.69894 1.08502 1.35723 1.39149 0.87021 0.77960 0.80236 0.84696 1.21289 1.22985 1.19454 1.21156 0.96598 0.87821 0.92259 1.23028 0.97509 0.92783 1.00131 0.90606 1.22766 0.99435 0.98550 0.96508 1.22000 1.00504 0.81994 0.96512 1.48461 1.56539 1.08811 1.19761 1.16360 0.78299 0.86141 0.79844 1.90844 1.59076 1.14613 1.76758 1.21558 1.11608 0.90949 0.98725 1.23222 0.96568 0.93535 0.93368 1.50778 1.40311 1.05370 1.17542 1.21065 0.92377 0.99166 0.78653 1.22288 0.92775 1.03020 1.03879 1.21984 1.03834 0.92671 1.02046 1.22305 1.02007 0.99327 0.98516 1.81917 1.16039 1.09708 0.97405 1.74742 1.10825 1.07649 1.14500 1.22276 0.95388 0.93621 0.87569 0.97360 0.94026 0.95471 0.92748 0.92685 0.93741 0.90871 0.90469 0.91310 0.91439 0.78297 0.91235 0.89708 0.91264 0.91256 0.90231 0.90648 0.91019 0.89463 0.91137 0.89475 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.49 10.74 59.84 0.64 3.13 16 2 N -0.61 -14.46 2.43 -181.13 -0.44 -14.90 16 3 C -0.27 -7.43 9.11 -15.06 -0.14 -7.57 16 4 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 5 C 0.04 1.13 5.29 -17.43 -0.09 1.04 16 6 N -0.89 -27.22 13.97 55.49 0.78 -26.45 16 7 Si 0.87 22.06 25.09 -169.99 -4.26 17.79 16 8 H -0.28 -6.96 6.68 56.52 0.38 -6.58 16 9 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.15 3.12 4.08 -4.05 -0.02 3.10 16 12 C -0.11 -2.11 3.27 -88.47 -0.29 -2.40 16 13 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 14 C -0.13 -2.05 6.42 -24.88 -0.16 -2.21 16 15 C 0.11 1.79 5.52 -3.04 -0.02 1.78 16 16 N -0.60 -11.55 3.33 -171.72 -0.57 -12.12 16 17 C 0.61 11.76 7.85 -12.48 -0.10 11.66 16 18 O -0.54 -12.02 17.12 5.28 0.09 -11.93 16 19 C -0.09 -1.40 6.85 -83.55 -0.57 -1.98 16 20 C 0.09 1.10 10.43 -16.83 -0.18 0.92 16 21 N -0.35 -3.76 3.44 -48.35 -0.17 -3.93 16 22 C 0.17 1.13 1.25 -131.81 -0.16 0.96 16 23 C -0.16 -0.87 8.74 37.16 0.32 -0.55 16 24 C -0.15 -0.85 8.11 37.16 0.30 -0.55 16 25 C -0.16 -0.80 8.30 37.16 0.31 -0.49 16 26 N -0.07 -0.96 12.91 60.35 0.78 -0.18 16 27 N -0.20 -3.12 9.77 32.85 0.32 -2.80 16 28 C 0.13 2.86 5.52 -2.52 -0.01 2.85 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.03 0.47 7.84 -51.93 -0.41 0.06 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.06 1.28 3.28 -51.93 -0.17 1.11 16 34 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 35 H 0.07 1.12 8.04 -51.93 -0.42 0.71 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.03 7.62 -51.93 -0.40 0.64 16 38 H 0.07 1.04 7.73 -51.93 -0.40 0.64 16 39 H 0.20 1.94 7.62 -52.49 -0.40 1.54 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.51 8.06 -51.93 -0.42 0.10 16 46 H 0.07 0.34 7.43 -51.93 -0.39 -0.04 16 47 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.14 8.04 -51.93 -0.42 1.73 16 50 H 0.08 1.90 7.95 -51.93 -0.41 1.49 16 LS Contribution 397.77 15.07 5.99 5.99 Total: -1.00 -34.21 397.77 -6.11 -40.32 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -8.46 Total: -1.50 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -0.16 Total: 9.70 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.70 Total: -60.37 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.26 Total: 17.79 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.21 -6.11 -40.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317840343.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.184 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds