Wall clock time and date at job start Tue Mar 31 2020 20:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 120.00180 * 2 1 4 4 H 1.08002 * 119.99822 * 321.77617 * 3 2 1 5 5 C 1.38808 * 120.00250 * 141.77313 * 3 2 1 6 6 N 1.31615 * 120.00148 * 157.39742 * 5 3 2 7 7 Si 1.86803 * 120.00023 * 337.39853 * 5 3 2 8 8 H 1.48504 * 109.47093 * 95.66318 * 7 5 3 9 9 H 1.48492 * 109.47076 * 215.66597 * 7 5 3 10 10 H 1.48504 * 109.47033 * 335.67020 * 7 5 3 11 11 C 1.46495 * 119.99911 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47657 * 89.99733 * 11 2 1 13 13 H 1.08999 * 110.88887 * 305.70230 * 12 11 2 14 14 C 1.55153 * 111.00963 * 181.81792 * 12 11 2 15 15 C 1.54366 * 102.92455 * 206.45401 * 14 12 11 16 16 N 1.47018 * 107.28915 * 22.13696 * 15 14 12 17 17 C 1.34776 * 125.65269 * 181.12536 * 16 15 14 18 18 O 1.21596 * 120.00179 * 179.97438 * 17 16 15 19 19 C 1.47524 * 119.99855 * 359.96614 * 17 16 15 20 20 C 1.36596 * 125.76995 * 179.71591 * 19 17 16 21 21 N 1.34815 * 106.83616 * 179.89420 * 20 19 17 22 22 C 1.46504 * 126.59213 * 180.10765 * 21 20 19 23 23 C 1.52999 * 109.47333 * 75.27168 * 22 21 20 24 24 C 1.53008 * 109.47020 * 195.27498 * 22 21 20 25 25 C 1.53006 * 109.47128 * 315.26983 * 22 21 20 26 26 N 1.40210 * 106.81396 * 0.35556 * 21 20 19 27 27 N 1.28764 * 108.36402 * 359.77499 * 26 21 20 28 28 C 1.47424 * 108.70414 * 1.09554 * 16 15 14 29 29 H 1.08996 * 109.47240 * 84.96709 * 1 2 3 30 30 H 1.09005 * 109.47465 * 324.96731 * 1 2 3 31 31 H 1.09004 * 109.47284 * 204.96742 * 1 2 3 32 32 H 0.97004 * 120.00377 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47424 * 209.99631 * 11 2 1 34 34 H 1.09002 * 109.47212 * 329.99483 * 11 2 1 35 35 H 1.09001 * 110.72127 * 324.78995 * 14 12 11 36 36 H 1.09001 * 110.72229 * 88.06015 * 14 12 11 37 37 H 1.08998 * 109.84811 * 262.73056 * 15 14 12 38 38 H 1.08997 * 110.03348 * 141.64926 * 15 14 12 39 39 H 1.07997 * 126.58297 * 0.03188 * 20 19 17 40 40 H 1.09000 * 109.46818 * 60.00397 * 23 22 21 41 41 H 1.08994 * 109.46894 * 179.97438 * 23 22 21 42 42 H 1.08994 * 109.47222 * 300.00254 * 23 22 21 43 43 H 1.08996 * 109.46948 * 59.99818 * 24 22 21 44 44 H 1.08998 * 109.46805 * 179.97438 * 24 22 21 45 45 H 1.09001 * 109.46658 * 299.99933 * 24 22 21 46 46 H 1.09003 * 109.46908 * 60.00063 * 25 22 21 47 47 H 1.09001 * 109.46979 * 180.02562 * 25 22 21 48 48 H 1.08996 * 109.47123 * 300.00162 * 25 22 21 49 49 H 1.08995 * 110.37231 * 217.03366 * 28 16 15 50 50 H 1.09005 * 110.46272 * 94.75343 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7833 2.0209 -0.5787 5 6 3.3145 1.3148 0.7438 6 7 4.1992 2.2362 0.4268 7 14 3.6265 0.1805 2.1949 8 1 4.4693 -0.9616 1.7581 9 1 4.3270 0.9307 3.2679 10 1 2.3312 -0.3296 2.7118 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5209 -1.7501 -2.0077 14 6 3.1877 -3.0754 -1.4855 15 6 3.9369 -3.0225 -2.8342 16 7 4.0793 -1.6056 -3.1996 17 6 4.6601 -1.1384 -4.3225 18 8 4.7217 0.0595 -4.5220 19 6 5.2213 -2.0804 -5.3094 20 6 5.8282 -1.7383 -6.4843 21 7 6.1957 -2.8887 -7.0834 22 6 6.8848 -3.0223 -8.3693 23 6 8.3593 -2.6514 -8.1988 24 6 6.7758 -4.4680 -8.8586 25 6 6.2388 -2.0873 -9.3937 26 7 5.7865 -3.9329 -6.2419 27 7 5.2166 -3.4205 -5.2072 28 6 3.4809 -0.7803 -2.1346 29 1 -0.3633 0.0902 -1.0237 30 1 -0.3634 0.8415 0.5899 31 1 -0.3634 -0.9316 0.4338 32 1 5.0135 2.3261 0.9463 33 1 3.1499 -1.1386 0.5133 34 1 1.6084 -2.0286 0.5130 35 1 3.8910 -3.1606 -0.6571 36 1 2.4734 -3.8987 -1.4725 37 1 3.3618 -3.5462 -3.5978 38 1 4.9210 -3.4799 -2.7329 39 1 5.9857 -0.7381 -6.8600 40 1 8.8195 -3.3176 -7.4691 41 1 8.8720 -2.7512 -9.1555 42 1 8.4370 -1.6216 -7.8503 43 1 5.7254 -4.7322 -8.9800 44 1 7.2881 -4.5672 -9.8155 45 1 7.2360 -5.1341 -8.1288 46 1 6.3164 -1.0574 -9.0452 47 1 6.7512 -2.1870 -10.3506 48 1 5.1884 -2.3515 -9.5152 49 1 2.9796 0.0874 -2.5634 50 1 4.2441 -0.4637 -1.4236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317840343.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:24 Heat of formation + Delta-G solvation = 68.349319 kcal Electronic energy + Delta-G solvation = -29882.900326 eV Core-core repulsion = 25947.536287 eV Total energy + Delta-G solvation = -3935.364040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.36432 -40.92547 -38.98245 -38.30404 -37.17189 -33.92441 -33.24383 -32.87915 -31.72160 -30.19851 -28.53414 -28.44006 -28.01977 -27.52174 -25.04935 -24.75387 -23.30728 -22.78281 -21.60675 -21.41177 -20.19340 -18.78063 -18.35924 -17.54073 -17.36818 -17.19794 -16.87702 -16.43813 -15.77118 -15.69901 -15.57495 -15.12467 -14.98486 -14.92268 -14.67534 -14.43769 -14.18191 -13.85881 -13.68605 -13.57970 -13.40035 -13.36058 -13.25804 -13.17836 -13.03642 -12.79389 -12.68752 -12.60341 -12.47225 -12.30775 -12.14058 -11.99135 -11.85763 -11.75781 -11.56486 -11.34007 -11.28693 -11.23581 -10.58996 -10.42748 -9.66605 -8.68712 -8.15137 -5.54662 0.09086 0.58146 0.99139 1.31469 1.42707 1.54198 1.92108 2.15249 2.44773 3.01813 3.10384 3.20818 3.41344 3.59932 3.63572 3.74034 3.75502 3.83822 3.91281 4.03934 4.13893 4.35879 4.42577 4.52190 4.55510 4.58057 4.65968 4.66469 4.70096 4.71872 4.77835 4.78090 4.79793 4.84524 4.86597 4.99201 5.05678 5.07875 5.11131 5.17250 5.17636 5.21848 5.26079 5.31293 5.47080 5.51585 5.97621 6.21758 6.45434 6.80037 7.04307 7.04559 7.68145 8.09212 9.04296 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020819 B = 0.002727 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.601148 B =10264.862883 C =10603.609699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.626 5.626 3 C -0.253 4.253 4 H 0.030 0.970 5 C -0.015 4.015 6 N -0.946 5.946 7 Si 0.938 3.062 8 H -0.270 1.270 9 H -0.312 1.312 10 H -0.252 1.252 11 C 0.143 3.857 12 C -0.103 4.103 13 H 0.085 0.915 14 C -0.120 4.120 15 C 0.115 3.885 16 N -0.609 5.609 17 C 0.602 3.398 18 O -0.582 6.582 19 C -0.116 4.116 20 C 0.106 3.894 21 N -0.337 5.337 22 C 0.158 3.842 23 C -0.159 4.159 24 C -0.146 4.146 25 C -0.162 4.162 26 N -0.077 5.077 27 N -0.216 5.216 28 C 0.142 3.858 29 H 0.013 0.987 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.260 0.740 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.222 0.778 40 H 0.055 0.945 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.111 0.889 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.117 0.883 48 H 0.061 0.939 49 H 0.041 0.959 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.513 -18.149 -20.323 27.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.351 5.351 3 C -0.383 4.383 4 H 0.048 0.952 5 C -0.212 4.212 6 N -0.590 5.590 7 Si 0.766 3.234 8 H -0.197 1.197 9 H -0.241 1.241 10 H -0.175 1.175 11 C 0.017 3.983 12 C -0.125 4.125 13 H 0.103 0.897 14 C -0.159 4.159 15 C -0.007 4.007 16 N -0.340 5.340 17 C 0.390 3.610 18 O -0.462 6.462 19 C -0.256 4.256 20 C -0.052 4.052 21 N -0.123 5.123 22 C 0.077 3.923 23 C -0.217 4.217 24 C -0.203 4.203 25 C -0.220 4.220 26 N -0.057 5.057 27 N -0.089 5.089 28 C 0.020 3.980 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.137 0.863 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.239 0.761 40 H 0.074 0.926 41 H 0.134 0.866 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.130 0.870 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.135 0.865 48 H 0.080 0.920 49 H 0.059 0.941 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.650 -18.976 -20.294 28.352 hybrid contribution 0.526 1.605 0.717 1.834 sum 6.176 -17.371 -19.577 26.892 Atomic orbital electron populations 1.21209 0.82231 1.00458 0.98256 1.44214 1.02369 1.01514 1.86962 1.18449 1.06136 0.91443 1.22300 0.95249 1.26059 0.96684 0.98380 1.00087 1.70048 1.09365 1.38908 1.40643 0.85930 0.78573 0.78476 0.80392 1.19733 1.24134 1.17539 1.21298 0.95956 0.87410 0.93587 1.22882 0.97176 0.93988 0.98427 0.89663 1.22796 0.99743 0.97358 0.95981 1.22169 1.01278 0.79838 0.97372 1.48564 1.56231 1.09986 1.19221 1.16894 0.77568 0.86242 0.80263 1.90802 1.60824 1.16707 1.77862 1.21146 1.14102 0.90926 0.99396 1.23494 0.94774 0.94825 0.92137 1.51170 1.38895 1.04125 1.18068 1.21634 0.93005 1.00507 0.77104 1.22320 0.91702 1.02420 1.05260 1.22019 1.03509 0.91535 1.03250 1.22355 1.01679 0.98752 0.99175 1.81827 1.15948 1.10516 0.97407 1.74691 1.11573 1.07222 1.15454 1.21875 0.94899 0.93675 0.87527 0.96839 0.94733 0.91578 0.93098 0.94847 0.89723 0.90570 0.86284 0.89906 0.90874 0.76108 0.92554 0.86589 0.91525 0.92243 0.87026 0.91885 0.90871 0.86471 0.92017 0.94051 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.69 10.74 127.77 1.37 6.06 16 2 N -0.63 -29.29 2.43 -726.96 -1.77 -31.05 16 3 C -0.25 -14.62 9.11 84.03 0.77 -13.85 16 4 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 5 C -0.02 -0.91 5.29 84.86 0.45 -0.47 16 6 N -0.95 -61.08 13.97 21.65 0.30 -60.78 16 7 Si 0.94 46.25 25.09 68.60 1.72 47.97 16 8 H -0.27 -12.57 6.68 99.48 0.66 -11.91 16 9 H -0.31 -15.81 7.11 99.48 0.71 -15.11 16 10 H -0.25 -11.57 7.11 99.48 0.71 -10.86 16 11 C 0.14 5.71 4.08 86.38 0.35 6.06 16 12 C -0.10 -3.73 3.27 -9.40 -0.03 -3.76 16 13 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 14 C -0.12 -3.31 6.42 31.80 0.20 -3.10 16 15 C 0.12 3.48 5.52 86.74 0.48 3.96 16 16 N -0.61 -23.94 3.33 -815.46 -2.71 -26.66 16 17 C 0.60 24.33 7.85 86.69 0.68 25.01 16 18 O -0.58 -27.84 17.12 -4.02 -0.07 -27.91 16 19 C -0.12 -3.69 6.85 40.82 0.28 -3.41 16 20 C 0.11 2.52 10.43 83.85 0.87 3.40 16 21 N -0.34 -6.69 3.44 -306.87 -1.06 -7.74 16 22 C 0.16 1.71 1.25 3.61 0.00 1.71 16 23 C -0.16 -1.30 8.74 71.98 0.63 -0.67 16 24 C -0.15 -1.31 8.11 71.98 0.58 -0.73 16 25 C -0.16 -1.11 8.30 71.98 0.60 -0.51 16 26 N -0.08 -1.99 12.91 37.02 0.48 -1.51 16 27 N -0.22 -6.46 9.77 -50.00 -0.49 -6.95 16 28 C 0.14 6.47 5.52 86.86 0.48 6.95 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.03 1.35 8.08 -2.38 -0.02 1.33 16 31 H 0.07 2.03 7.84 -2.39 -0.02 2.01 16 32 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 33 H 0.03 1.50 3.28 -2.39 -0.01 1.49 16 34 H 0.08 2.75 7.86 -2.39 -0.02 2.73 16 35 H 0.08 2.09 8.04 -2.39 -0.02 2.07 16 36 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.08 2.30 7.62 -2.39 -0.02 2.28 16 38 H 0.07 2.16 7.73 -2.39 -0.02 2.14 16 39 H 0.22 4.12 7.62 -2.91 -0.02 4.10 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.06 0.74 8.06 -2.39 -0.02 0.72 16 46 H 0.07 0.51 7.43 -2.39 -0.02 0.49 16 47 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.04 2.20 8.04 -2.39 -0.02 2.19 16 50 H 0.04 1.95 7.95 -2.38 -0.02 1.93 16 Total: -1.00 -81.43 397.77 5.00 -76.43 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.87 Total: 11.56 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 7.72 Total: 26.65 kcal Atomic # 7 Polarization: -129.46 SS G_CDS: -5.25 Total: -134.70 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.07 Total: -27.91 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.72 Total: 47.97 kcal Total: -81.43 5.00 -76.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317840343.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.778 kcal (2) G-P(sol) polarization free energy of solvation -81.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds